Query= MSMg01no535_k12.b1 MSMg01no535_k12.b1 CHROMAT_FILE:
MSMg01no535_k12.b1 PHD_FILE: MSMg01no535_k12.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:13:32 2005
(712 letters)
>mm_chr14_71251559_71252668
Length = 1110
Score = 1230 bits (636), Expect = 0.0
Identities = 680/700 (97%), Gaps = 10/700 (1%)
Strand = Plus / Plus
Query: 17 gaattcctatggtgttctgagcctggggagcaaggcaactgagctgaggacatcaactgc 76
|||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 217 gaattcctatggtgcactgagcctggggaacaaggcaactgagctgaggacatcaactgc 276
Query: 77 cctgccatttttctgagtggtggttgattgaagaattaattgcagcacccgtgaagatca 136
|||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 277 cctgccatttttctgactggtggttgattgaagaattaattgcagcacctgtgaagatca 336
Query: 137 caatgagacttcctttcaatttaattcagtaactcgtaaataatgactctatcagatgat 196
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 337 caatgagacttcctttcaatttaattcagtaactcgtaaataatgactctatcagatgat 396
Query: 197 gtagatgttacaaaatagtgtgagaccctacttaatggacactatctatatcatcagtgg 256
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 397 gtagatgttacaaaatagtgtgagaccctacttaatggacactatctatatcatcagtgg 456
Query: 257 ggtcttccagccttttctttctctgattgacacaattattttctaaatgggaataggatc 316
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 457 ggtcttccagccttttctttctctgattgacacaattattttctaaatgggaataggatc 516
Query: 317 atataacttcattgctgaaagcccggaaacgtcccctctgaactgcctcctgactctgct 376
||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 517 atataacttcattgccgaaagcccggaaacgtctcctctgaactgcctcctgactctgct 576
Query: 377 cctcacttcctgtgaaacccctttccctctactctgaagtgcatgtggcatccctcacct 436
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 577 cctcacttcctgtgaaactcctttccctctactctgaagtgcatgtggcatccctcacct 636
Query: 437 gtatggaacctggcatgggccagacatgatgcaccatggaactgttacctgtgtggagct 496
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 637 gtatggaacctggcatgggccagacatgatgcaccatggaac------ctgtgtggagct 690
Query: 497 tggcatgggccagacatgatgcaccatgcaaagctctttctgcctggaatctttcctgtg 556
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 691 tggcatgggccagacatgatgtaccatgcaaagctctttctgcctggaatctttcctgtg 750
Query: 557 ggttggttaggactgcattaagcttcaaggataag----cccttgtagcaaacaagagtt 612
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 751 ggttggttaggactgcattaagcttcaaggataagtaagcccttgtagcaaacaagagtt 810
Query: 613 taaaccttaggactttacatgccctatgtgataagaaggcataagtatgtttgtcagaat 672
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 811 taaaccttaggactttacatgccctatgtgataagaaggcatacgtatgtttgtcagaat 870
Query: 673 tcaaacatactttgcaggttgctgttagtacattgacttt 712
||||||||||||||||||||||||||||||||||||||||
Sbjct: 871 tcaaacatactttgcaggttgctgttagtacattgacttt 910
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 712
Length of database: 1110
Length adjustment: 10
Effective length of query: 702
Effective length of database: 1100
Effective search space: 772200
Effective search space used: 772200
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)
| Query= MSMg01no535_k12.g1 MSMg01no535_k12.g1 CHROMAT_FILE:
MSMg01no535_k12.g1 PHD_FILE: MSMg01no535_k12.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:13:32 2005
(670 letters)
>mm_chr14_71384435_71385504
Length = 1070
Score = 1266 bits (655), Expect = 0.0
Identities = 668/675 (98%), Gaps = 5/675 (0%)
Strand = Plus / Minus
Query: 1 acatcccttcccatgctagctgacccaccacctctcttcctccaccccattcccaggctt 60
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 1035 acatcccttcccatgctagctgacccaccacatctcttcctccaccccattcccaggctt 976
Query: 61 atgtcagccccattgattgttcaccactacttgccaccagggagtggtgttccagctgct 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 975 atgtcagccccattgattgttcaccactacttgccaccagggagtggtgttccagctgct 916
Query: 121 ttgcattgagagcttgcattctgagaatgtattgagattgaatgggcaaactacattcca 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 915 ttgcattgagagcttgcattctgagaatgtattgagattgaatgggcaaactacattcca 856
Query: 181 tgggccaaagggagcctgtgtctgtttttgtaaataaagttttattggcacatagcctag 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 855 tgggccaaagggagcctgtgtctgtttttgtaaataaagttttattggcacatagcctag 796
Query: 241 tctggttttgataccgtgcctgtgacagctgttgggctacagcagcagagctgacaaaat 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 795 tctggttttgataccgtgcctgtgacagctgttgggctacagcagcagagctgacaaaat 736
Query: 301 agcatggcccacagagtctgttatgtttcctttctggcccaacatagaaaaaaaattgct 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 735 agcatggcccacagagtctgttatgtttcctttctggcccaacatagaaaaaaaattgct 676
Query: 361 agtcaagcttggtggtgtgaaccagtaaccccagccccttgggaagatgaggtggataga 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 675 agtcaagcttggtggtgtgaaccagtaaccccagccccttgggaagatgaggtggataga 616
Query: 421 aagtttagggtcaacctaagcaatttagtgagtccctaacctggttcaaataattttagt 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 615 aagtttagggtcaacctaagcaatttagtgagtccctaacctggttcaaataattttagt 556
Query: 481 taaatataacttggtggtacagtgcctgcctataatgcattagtccctagattcaatccc 540
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 555 taaatataacttggtggtacagtgcctgcctataatgcattagtccctagtttcaatccc 496
Query: 541 cagtgcaaaaataaat-----aaataaaatgtaaaaattaacttatttatcacaatctaa 595
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 495 cagtgcaaaaataaataaataaaataaaatgtaaaaattaacttatttatcacaatctaa 436
Query: 596 agaaactattaagggacccaaaagctcactggctaagctaatgtcaccagccaatagatg 655
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 435 agaaactattaagggacccaaaagctcactggctaagctaatgtcaccagccaatagatg 376
Query: 656 ccaagatttgataca 670
|||||||||||||||
Sbjct: 375 ccaagatttgataca 361
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 670
Length of database: 1070
Length adjustment: 10
Effective length of query: 660
Effective length of database: 1060
Effective search space: 699600
Effective search space used: 699600
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
