BAC Information

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BAC

Clone NameMSMg01-536B22
Chromosome14 (Build37)
Map Location 84,342,847 - 84,475,421
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC100043773, LOC100043279, LOC100043775, LOC100043776
Downstream geneLOC100043280, LOC100043285, Pcdh17, 9630013A20Rik, LOC629794
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-536B22.T7 (MSMg01no536_b22.b1)MSMg01-536B22.TJ (MSMg01no536_b22.g1)
ACCAG603410AG603411
length795773
length of high quality
(start - end)		595 (51 - 645)510 (59 - 568)
definitionCHROMAT_FILE: MSMg01no536_b22.b1 PHD_FILE: MSMg01no536_b22.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:14:08 2005CHROMAT_FILE: MSMg01no536_b22.g1 PHD_FILE: MSMg01no536_b22.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:14:08 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(84,342,847 - 84,343,437)(84,475,107 - 84,475,421)
sequence
NTTTTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
CGCGGAATTCCCAAACAAATAACACAAAACTCAACTGATAGAAATGCAAG
CTGCATACCAAGATTGGACAAATGTACTCTACATTACTCTATTAACCATC
TACAAAATCCCTAGCTACCTGCAGCTCTTTCATGTCAAGTGGTTCTGGTT
TATCTCCTTCTTCCATCTGCTCTTGTCCCCTATCTCGTCTTTCTCCTTCC
TCTTTAGTCTCTAAAATTTTCAGCTCTATCTTTTCCTTCCACTGCCCAAT
TACTCGCTCTAGCCTTATCTGACCAATTAAGATATCACCTGACTTCACCT
GAGTGAATGATCATTCGGGCATCCTTCTTGAGGAAGTAGAAAATACAGCA
ATCCACAACACTTATCAATTAATGTTTTAGGTAGATTTCTGTGGATGTAA
CAAAATGACTAGGATTGTAAGTTTTTTAGAAATGGAAATATTTACTTTAA
ATAGAGGCTTTAGTGTTTTAAATGTATAGATCTGCTTCCTCGTACCTCTT
ATTCTGTATTTTGGGGTCTGTGGATATGTAGAAACAAGATATTCTAGAAG
TATATAACAGAAAAGGCCTATTTCAATTCTATTTTGTGGCAGGGAGATGG
GGAGAAAGGGGAGGGGAAGGAAAAAAGGGAAANNNNNNNNNNNNNNNNNN
NNNGNNNNGGNNNANGNANNNNNNNNANNNNNGGGGAGGGNNATAGAAAN
GGGGTTNGGAGAAAGGAATTAAAAGAAATATTGTATGTAATTTTG

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXCTAAACTTAAAGAAAGCAGTTGTGATGACCTGGACAAGATCA
AGATATTAGTATTCAAGGATAAAATAAAAGAGGCTCATGAGTATGACAAA
GTGAGGATCTTTGGACAGATAATTGTGGGAAGCCGTTGCAGAGTGGCAGT
TGCAGAGTGGCAGTTGGCTACTGCTGGCCACCACACATACATAGGCAGTG
AAGGTTCTTTTGCCAAGACAAGTTAACCAATCAGATGTGAGACACGCCTC
TCCGAGGCTTATGTAAGCAGCACCAGTTCTGGGCTCAGGGTCTTTTCGCC
TCTACAATCAAGCTCTCCCAATAAACGTGTGCAGAAGGATCCTGTTGCAG
CGTCGTTCTTCCTGGCCAGTCGAGCACGCGCAAGAAGTGGTGCCGAAAAC
CCGGGAAAAGAAACATCTTCAGGCATGAGGGAAGACCCCCTGCTACAGGG
AGGATTCAGAACTGCATCACGGGGAAGGAGCGGTTAATAAAGGTTCCCGC
AAAACAGACTGCTGAGAAGGATCCAGCGTGGATTCAGAACTCTTCAGCTG
GGGAACGGTGGTAATAAAGGTTCCCCTAAAACAGACTGCTGAGAAGGATC
CAGCATGGATTCAGAACTCTTCAGCTGGAATGGTGGGTATAAAGGTTTCC
GTAAAACAGACTGCTGAGAANGATCCGGCATGGATTCAGAACTCTTCATC
TGGGGAACAGTGATAATGAGTTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no536_b22.b1 MSMg01no536_b22.b1 CHROMAT_FILE:
MSMg01no536_b22.b1 PHD_FILE: MSMg01no536_b22.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:14:08 2005
         (595 letters)



>mm_chr14_84342643_84343637
          Length = 995

 Score = 1096 bits (567), Expect = 0.0
 Identities = 585/591 (98%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcccaaacaaataacacaaaactcaactgatagaaatgcaagctgcataccaagat 64
           |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcccaagcaaataacacaaaactcaactgatagaaatgcaagctgcataccaagat 264

                                                                       
Query: 65  tggacaaatgtactctacattactctattaaccatctacaaaatccctagctacctgcag 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 tggacaaatgtactctacattactctattaaccatctacaaaatccctagctacctgcag 324

                                                                       
Query: 125 ctctttcatgtcaagtggttctggtttatctccttcttccatctgctcttgtcccctatc 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 ctctttcatgtcaagtggttctggtttatctccttcttccatctgctcttgtcccctatc 384

                                                                       
Query: 185 tcgtctttctccttcctctttagtctctaaaattttcagctctatcttttccttccactg 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 tcgtctttctccttcctctttagtctctaaaattttcagctctatcttttccttccactg 444

                                                                       
Query: 245 cccaattactcgctctagccttatctgaccaattaagatatcacctgacttcacctgagt 304
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 445 cccaattactcgctctagccttatctgaccaattaagatatcacctgacctcacctgagt 504

                                                                       
Query: 305 gaatgatcattcgggcatccttcttgaggaagtagaaaatacagcaatccacaacactta 364
            ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 505 aaatgatcattcgggcatccttcttgaggaagcagaaaatacagcaatccacaacactta 564

                                                                       
Query: 365 tcaattaatgttttaggtagatttctgtggatgtaacaaaatgactaggattgtaagttt 424
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 tcaattaatgttttaggaagatttctgtggatgtaacaaaatgactaggattgtaagttt 624

                                                                       
Query: 425 tttagaaatggaaatatttactttaaatagaggctttagtgttttaaatgtatagatctg 484
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 tttaaaaatggaaatatttactttaaatagaggctttagtgttttaaatgtatagatctg 684

                                                                       
Query: 485 cttcctcgtacctcttattctgtattttggggtctgtggatatgtagaaacaagatattc 544
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 cttcctcgtacctcttattctgtattttggggtctgtggatatgtagaaacaagatattc 744

                                                              
Query: 545 tagaagtatataacagaaaaggcctatttcaattctattttgtggcaggga 595
           |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 745 tagaagtatataacagaaaaggcctatttcaattctattttgtggcaggga 795


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 595
Length of database: 995
Length adjustment: 10
Effective length of query: 585
Effective length of database: 985
Effective search space:   576225
Effective search space used:   576225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no536_b22.g1 MSMg01no536_b22.g1 CHROMAT_FILE:
MSMg01no536_b22.g1 PHD_FILE: MSMg01no536_b22.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:14:08 2005
         (510 letters)



>mm_chr14_84475107_84476016
          Length = 910

 Score =  594 bits (307), Expect = e-174
 Identities = 313/315 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   ctaaacttaaagaaagcagttgtgatgacctggacaagatcaagatattagtattcaagg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 315 ctaaacttaaagaaagcagttgtgatgacctggacaagatcaagatattagtattcaagg 256

                                                                       
Query: 61  ataaaataaaagaggctcatgagtatgacaaagtgaggatctttggacagataattgtgg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 255 ataaaataaaagaggctcatgagtatgacaaagtgaggatctttggacagataattgtgg 196

                                                                       
Query: 121 gaagccgttgcagagtggcagttgcagagtggcagttggctactgctggccaccacacat 180
           |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 195 gaagccattgcagagtggcagttgcagagtggcagttggctactgctggccaccacacat 136

                                                                       
Query: 181 acataggcagtgaaggttcttttgccaagacaagttaaccaatcagatgtgagacacgcc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 135 acataggcagtgaaggttcttttgccaagacaagttaaccaatcagatgtgagacacgcc 76

                                                                       
Query: 241 tctccgaggcttatgtaagcagcaccagttctgggctcagggtcttttcgcctctacaat 300
           ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 75  tctcctaggcttatgtaagcagcaccagttctgggctcagggtcttttcgcctctacaat 16

                          
Query: 301 caagctctcccaata 315
           |||||||||||||||
Sbjct: 15  caagctctcccaata 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 510
Length of database: 910
Length adjustment: 10
Effective length of query: 500
Effective length of database: 900
Effective search space:   450000
Effective search space used:   450000
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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