BAC Information

Click to search

BAC

Clone NameMSMg01-536J08
Chromosome14 (Build37)
Map Location 55,787,472 - 55,787,968
singlet/doubletsinglet
Overlap genenone
Upstream geneDad1, Abhd4, Olfr49, EG666623, LOC667819, LOC100042642, 5330426L24Rik, Oxa1l, Slc7a7, Mrpl52, Mmp14, Lrp10, Rem2, Prmt5, D14Ertd500e, Jub, 4931414P19Rik, Psmb5, 5830406J20Rik, Cdh24, Acin1, LOC667711, 1700123O20Rik, LOC100042676, Cebpe, Slc7a8, LOC667893, Homez, Ppp1r3e, Bcl2l2, Pabpn1, Slc22a17, Efs, Il25, Cmtm5, Myh6, Myh7, Ngdn, Zfhx2, Thtpa, Ap1g2, Jph4
Downstream geneLOC667938, Dhrs2, LOC100042720, LOC628176, LOC100042729, EG667952, Dhrs4, BC036313, Cpne6, Nrl, Pck2, Wdr23, 1110028A07Rik, Psme1, 1500005A01Rik, Psme2, Rnf31, Isgf3g, Rec8L1, Ipo4, Tm9sf1, Tssk4, 1810034K20Rik, Nedd8, Gmpr2, Tinf2, Tgm1, Rabggta, Dhrs1, 2610027L16Rik, Cideb, Ltb4r2, Ltb4r1, Adcy4, Ripk3, Nfatc4, BC030046, Cbln3, 9130227C08Rik, 2310014G06Rik, Cma1, Cma2, LOC100042759, EG545056, Mcpt1, Mcpt9, Mcpt2, Mcpt4, Mcpt8, Ctsg, Gzme, Gzmd, Gzmg, LOC672095, Gzmn
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-536J08.T7 (MSMg01no536_j08.b1)MSMg01-536J08.TJ (MSMg01no536_j08.g1)
ACCAG603761AG603762
length774743
length of high quality
(start - end)		536 (74 - 609)497 (57 - 553)
definitionCHROMAT_FILE: MSMg01no536_j08.b1 PHD_FILE: MSMg01no536_j08.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:14:44 2005CHROMAT_FILE: MSMg01no536_j08.g1 PHD_FILE: MSMg01no536_j08.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:14:44 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TTTCTTTTCTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCAGAGGA
TCCGCGGAATTCAGGGATCATTAAGGCATGGAAAAATTTGAACGTCATGT
CGAGCTGGTATCGGCTTCTGGAACACCGAAAGGATCTCCCATCTCGGCTC
CATTGTTTGTGCTTGTGGGACCATCCACCACATCCACAGGGGCAACTGGA
TCAGGAGCCTCATTCTTGCAGCGTCTCACCAGCCTCTCCTGCACCCAAAG
AGGTTCTGTCTGGTCCCATGGAAACACACAAACAGACCCTCTCGCCCATG
TCAACACCGGATCTGGTCGATCCCCAGGGGAGATGGACACAATACCTGGT
GGTAATGAGACCATAACCTCAATCACCTGTGTGTCCATCTGGGGAGTCAA
TATGAGAGTCAAGTTTTCACTAGCTTCCCCTCTGTTGGGCAATGATTTCC
ACGCCCTTATAGCAATCTGATTCACCTGCTTAAACACCTGCAGTGGATAT
CCTGTTTGTTGTTGTGCAAATAGACCTTGACCAAGCAGCATATCCCTATC
CCATGCTGGATTTCCTGCAACAGCGTTAGCCACTGCCTGTTCATTTTAGG
GGTGCGGCTATAGCCTATTCCCCCCTTTTGTTTGTATACTCGGTTGACAT
CCAAAATGCTGCAAACATTGGTTGATTCCTACCAACGCCAAATTTGCTAC
TGCAGTTGGATAAAGGTCCACGGTCTTACTCATGGAAATTCTGGGATGAA
TCAGAACCAAAGTCCTTCCTGCCA

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXCCGCTTCAGGCTTCTGCGTGTTCCACTTTACAGCCCATGTAGTC
CCCTGTCTCTCTCCTGCCATTTGTCCAGCCCTTGGACTCACTCCTTCTCC
AGTTAGTTGTTCTGTGGCATCGCTGGTGTTGGGGAGGGCACACTTTGCCA
CACCTCCTGCTGATCTTGGCCCTAACACCCTAGCCATGTGCTGCGGACTT
GTTCATGGGCTCTCCTGCCTGCTTCCTTGTGGGGGTTCTCACCTGGATCA
TTAAGTTCATTGTTCAGTTATTACCTCTTTTAGGAATAGAGATTATTGTT
TATTACCCTGACTACTTTTCTTTTATTCAGTGGAACCAGAAGGGCTGCTA
ATTCACTGCCTTATATGGAACCTCGTTTTATTCTTATTCCTTTTTTCCTT
CCCTCCCTTTCTTCCTCCACCCTCCCCTCTCATCCTCTTCCCTTCCTTCC
CCTTTCCAGTTTCTTGGGTACTAGGGAAGGAGCTCGGGGCTCACATGCAC
CAGGCAAATACTCTGCTCCTGAGATCCAGCTCTTATGTGTCAATTTTATA
GCTGTGAGGTTTTCATGGACCCATTTTCTTGACTGAGACACAGGAATTAG
AGATTCACTCTGTCTAGCTGGGCTTCCTGTTACCCTCTGCTGGCAGTCTT
GGGTGCCTAACAGTGTGTGTGTGGGGGGTGGGGGTTGTTTTCN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no536_j08.g1 MSMg01no536_j08.g1 CHROMAT_FILE:
MSMg01no536_j08.g1 PHD_FILE: MSMg01no536_j08.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:14:44 2005
         (497 letters)



>mm_chr14_55787272_55788168
          Length = 897

 Score =  853 bits (441), Expect = 0.0
 Identities = 483/497 (97%)
 Strand = Plus / Plus

                                                                       
Query: 1   ccgcttcaggcttctgcgtgttccactttacagcccatgtagtcccctgtctctctcctg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ccgcttcaggcttctgcgtgttccactttacagcccatgtagtcccctgtctctctcctg 260

                                                                       
Query: 61  ccatttgtccagcccttggactcactccttctccagttagttgttctgtggcatcgctgg 120
           ||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||
Sbjct: 261 ccatttgtccagcccttggtctcactccttctcctgttagttgttctgtggcatcgctgg 320

                                                                       
Query: 121 tgttggggagggcacactttgccacacctcctgctgatcttggccctaacaccctagcca 180
           |||||||||||||||| |||||| ||||||||||||||||||||| ||||||||||||||
Sbjct: 321 tgttggggagggcacattttgccgcacctcctgctgatcttggccttaacaccctagcca 380

                                                                       
Query: 181 tgtgctgcggacttgttcatgggctctcctgcctgcttccttgtgggggttctcacctgg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tgtgctgcggacttgttcatgggctctcctgcctgcttccttgtgggggttctcacctgg 440

                                                                       
Query: 241 atcattaagttcattgttcagttattacctcttttaggaatagagattattgtttattac 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 atcattaagttcattgttcagttattacctcttttaggaatagagattattgtttattac 500

                                                                       
Query: 301 cctgactacttttcttttattcagtggaaccagaagggctgctaattcactgccttatat 360
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 501 cctgactacttttcttttattcagtggaaccagaagggctgctaattcgctgccttatat 560

                                                                       
Query: 361 ggaacctcgttttattcttattccttttttccttccctccctttcttcctccaccctccc 420
           ||||||| ||||||||||||||| |||||||||||||| |||||||||||||||||||||
Sbjct: 561 ggaaccttgttttattcttattctttttttccttcccttcctttcttcctccaccctccc 620

                                                                       
Query: 421 ctctcatcctcttcccttccttcccctttccagtttcttgggtactagggaaggagctcg 480
           ||||||||||||||| |||||||||||||||| |||||||||| |||| || ||||||||
Sbjct: 621 ctctcatcctcttcctttccttcccctttccaatttcttgggtgctagagatggagctcg 680

                            
Query: 481 gggctcacatgcaccag 497
           |||||||||||||||||
Sbjct: 681 gggctcacatgcaccag 697


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 497
Length of database: 897
Length adjustment: 10
Effective length of query: 487
Effective length of database: 887
Effective search space:   431969
Effective search space used:   431969
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


| Home | SequenceCutter | Blast | Download |