BAC Information

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BAC

Clone NameMSMg01-537B13
Chromosome14 (Build37)
Map Location 96,767,953 - 96,768,448
singlet/doubletsinglet
Overlap geneKlhl1
Upstream geneLOC382931, 4921530L21Rik
Downstream geneLOC100043366, LOC668654
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-537B13.T7 (MSMg01no537_b13.b1)MSMg01-537B13.TJ (MSMg01no537_b13.g1)
ACCAG604149AG604150
length748746
length of high quality
(start - end)
649 (52 - 700)495 (81 - 575)
definitionCHROMAT_FILE: MSMg01no537_b13.b1 PHD_FILE: MSMg01no537_b13.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:15:23 2005CHROMAT_FILE: MSMg01no537_b13.g1 PHD_FILE: MSMg01no537_b13.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:15:23 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
GGGGAACCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XCGCGGAATTCATGAAGTTTCACAAAAACAACCCAAGTAAACTAATTAAA
AATGGAGTCCAGAGCTAAACAGAGAGTTCTCAAGAAATGAATCTCAAATT
TCCAAGAAGCACCCAAAGAAATGTTCAGTGTCCATAGTTTCAATTGAAGT
GGAAATCAAAATGACTTCGAGTTTTCACCTCAAACCCATCAGAATGCCTA
AAATCAGATATTGAAGGGACAGCACATGCACATGAGGTTTTGGAGCAAGA
GGAGCACTCCTCTGCTGCTAGTAGTAGTGCAAACTTTTACAGTCACTCTG
GAAATCAGTTTGGTGGTTTCTCACAAAATTAGGAATATTTCTACCTGAAG
ACACAGCTATACCACTCCTAGGAATACATCTAAAAATGTTCCACCATCAC
ATAAAGATACATGATAAATTATGTTCATAGTGTTCATAGCACCCATATTC
ATTATAATCTGAAATTAAGACAACACAGATATCCACCAAATGAAGAGTGG
ATAGAGAAGTTGTGTGTCATTACACAATGAGTGCTACTCAATCATTAATA
ACAAGGACATCATGAATTTCTCAGGCAAATGGATGGAACTGGAAAATATC
ATCCCTATTGAGGTAGCTCAGACCCAAAAAGCACTCACTTATAAGTGGAT
ATTAGCCATAAAGTACAAGGTAACAATGCAATAATCAACAGACCCGAN
NNNAACAATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAGCAGACAAGAGGTAAAACA
ACTAATCAATAATCAGCAATCTGATGAAATTATAAATTTATGACTTAAAT
TGAAAAGATAATAATGATGACGATAATGATTATGAAGATAAGACATGTTT
AAACAGAGGTGCCCTGCATGGGTATATGCTGATATTCTAAGAGGGCATAG
GTTTCAAAAACACTGGCAAGTTTTGCATTATTTGCCAGAGCTTTTTCGGA
AGCATTAAAAAAAAAAAAAAAAAAAAAAAAAAACAAACAAACAAAAACCC
CTCTCTGTTGCCATTCTCCTCATTTGCCCATCAAAATTAGGTGTTCTAAC
CCTGATGCAGAAACAAACAAACAAACAAACAATAACAAATCCAAACAAAC
TGGTGAATTTTGGTTACAGGACACAGAGTTTGAACCTGAAACAGAAAGAG
ATTTTTTTTTTTTTTTGCTAGATAGCATACTTCCAAATATTTATATTCTT
CAATACAATGTAGGCTTCTGAAGAAAGAGAGGTCATTTGTTTTATACTGC
TTGGAATCTGCATACTATAATACTGATCTGCCAGGAAATACATGTCTCTT
TATGAAAACAGTATGCACATAGTATGACTGATTGTGAGATAATCACAGAC
TAGTTGATACTTGCTTTACAATAAGGAATACCAAGCTTATTACTGT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no537_b13.g1 MSMg01no537_b13.g1 CHROMAT_FILE:
MSMg01no537_b13.g1 PHD_FILE: MSMg01no537_b13.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:15:23 2005
         (495 letters)



>mm_chr14_96767753_96768647
          Length = 895

 Score =  951 bits (492), Expect = 0.0
 Identities = 495/496 (99%), Gaps = 1/496 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   agcagacaagaggtaaaacaactaatcaataatcagcaatctgatgaaattataaattta 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 agcagacaagaggtaaaacaactaatcaataatcagcaatctgatgaaattataaattta 260

                                                                       
Query: 61  tgacttaaattgaaaagataataatgatgacgataatgattatgaagataagacatgttt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tgacttaaattgaaaagataataatgatgacgataatgattatgaagataagacatgttt 320

                                                                       
Query: 121 aaacagaggtgccctgcatgggtatatgctgatattctaagagggcataggtttcaaaaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aaacagaggtgccctgcatgggtatatgctgatattctaagagggcataggtttcaaaaa 380

                                                                       
Query: 181 cactggcaagttttgcattatttgccagagctttttcggaagcattaaaaaaaaaaaaaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 cactggcaagttttgcattatttgccagagctttttcggaagcattaaaaaaaaaaaaaa 440

                                                                       
Query: 241 aaaaaaaaaaaaa-caaacaaacaaaaacccctctctgttgccattctcctcatttgccc 299
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 aaaaaaaaaaaaaacaaacaaacaaaaacccctctctgttgccattctcctcatttgccc 500

                                                                       
Query: 300 atcaaaattaggtgttctaaccctgatgcagaaacaaacaaacaaacaaacaataacaaa 359
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 atcaaaattaggtgttctaaccctgatgcagaaacaaacaaacaaacaaacaataacaaa 560

                                                                       
Query: 360 tccaaacaaactggtgaattttggttacaggacacagagtttgaacctgaaacagaaaga 419
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tccaaacaaactggtgaattttggttacaggacacagagtttgaacctgaaacagaaaga 620

                                                                       
Query: 420 gatttttttttttttttgctagatagcatacttccaaatatttatattcttcaatacaat 479
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 gatttttttttttttttgctagatagcatacttccaaatatttatattcttcaatacaat 680

                           
Query: 480 gtaggcttctgaagaa 495
           ||||||||||||||||
Sbjct: 681 gtaggcttctgaagaa 696


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 53
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 495
Length of database: 895
Length adjustment: 10
Effective length of query: 485
Effective length of database: 885
Effective search space:   429225
Effective search space used:   429225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)