BAC Information

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BAC

Clone NameMSMg01-537I23
Chromosome14 (Build37)
Map Location 32,622,124 - 32,760,913
singlet/doubletdoublet
Overlap geneAnkrd28
Upstream geneSfmbt1, Tmem110, Mustn1, Itih4, Itih3, Itih1, Nek4, Spcs1, Glt8d1, Gnl3, Pbrm1, EG432834, Nt5dc2, Stab1, Nisch, Tnnc1, Sema3g, Phf7, Bap1, Dnahc1, Capn7, Sh3bp5, Mettl6, Eaf1, Colq, Hacl1, Btd
Downstream geneGalntl2, Dph3, Oxnad1, Msmb, Ncoa4, Timm23, Parg, LOC665601, Ogdhl, 1700024G13Rik, Chat, Slc18a3, LOC100040834, EG665618, Ercc6, 9430077A04Rik, Prrxl1, 3425401B19Rik, 1810011H11Rik, 4922501K12Rik, E130203B14Rik, EG665658
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-537I23.T7 (MSMg01no537_i23.b1)MSMg01-537I23.TJ (MSMg01no537_i23.g1)
ACCAG604503AG604504
length740733
length of high quality
(start - end)		570 (52 - 621)585 (85 - 669)
definitionCHROMAT_FILE: MSMg01no537_i23.b1 PHD_FILE: MSMg01no537_i23.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:15:57 2005CHROMAT_FILE: MSMg01no537_i23.g1 PHD_FILE: MSMg01no537_i23.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:15:57 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(32,760,348 - 32,760,913)(32,622,124 - 32,622,686)
sequence
NNAAATACTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XCGCGGAATTCACCAGGTATTCTCGCTCAGTTGACTAGCAACCCCAAAGA
TCCACCTGCTTCTTCTTAGCTAGTGCTGAGATTTCAAGAGTGGGGGTTGT
TTTCTCTTTTTAATGTGGGTTCTGGGAATCAAACGCAAGTCCTTGCGCTT
GCAAGACAAAGATGATAGCAAGCAAACTGTCTCCCCCGCTCAGTGGTTGT
TCTAAGCCATTCAGTTCTGAGGCGATTTGTAATGCTTCCGAAGGCTGAAA
CAGATGACATCAGTGTCGACTGACAAGGAGCTCATGGAAGTAAATCTTCA
GGCTGACTCATGAGCCCCTCAGATAAATCAGAAATGAAGTCACTAGCAAT
CCAAGTGAGGGACGTGAGGGAGATGACTTGGTAAGTCTGCTCCTTTATAG
GGAAGCAGTTTTCTACTTGGTGGCCTTGAGCTCCCTATCCCAAAGAAGGC
CCTGACTTTATTCATATAGCTGTTCACATGATTCAGCTTTTGTTCCTCCT
CAGCCATGGCCCCTCCCCCTCTGCCTCTCTCCCCCTCTCCCCCCTCTCCC
TCTTCCCCTCTCCCCCTTTCTCTCTCCCTCTCCCCCTTTCCCTCTATCCT
CTCCTTCTCTCCCTCTCCTTCCTTTACCAACTTTTTCCCCCTCTCCCTCT
TTTTATTTCACCACTTATATTTTTCACATTCTTTCATACN

NAAAANNACCATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCAACAATAAGCACAAA
AGGATATCCTACTTGGGGTGTTTGATGCCTTATCACTAAATATGCAAGGT
TGTGTGGAAACCAACCATATTATTTAGGCAATTGCTATTAGTAACTTTAT
ACTGAAAGCCCATCTTACTATCTGACATAAGCATCTCTAACTATGTCTGA
GGTGGTGTTTTCTATCTGTAACTCAACAACCCAACCTTTCATATTATTTA
ACCTGTTCTTCACCTTTGGCTAGCAGCCCAGAATGCAAACTTGTGGGATC
ACTGCAGATGCTGTAATGTGAAATCTTAGTTGCCATTCTTTAAGATTGTT
ATTATTATTTGTGTATATATGTGTATTTGTATGGATTGTGTGTACAAGGG
TGCCCATGAAGGCCAGATAATAGTGTTGGAGCCCTTGGAGCTGGAGTTAT
AAATGGCCGTGAGCTGCTAGACGTGGGTGCTAGGAACTGAACTCAAGTCC
TCTGCAAGAGCAGGAAGTGTCCTTAACCACTGCGCTGATACTCTAGACTC
GTCTTCTTTCTCTCTCTCTCGCTCTCTCTCTCTCTCTCTCTCTCTCTCTC
TCTCTCTCTCTCTTTAAGGGAAGTACACTTTAGCTGTCCTCAGACACTCC
AGAAGAGGGAGTCAGGTCTCGTTACGGATGGTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no537_i23.b1 MSMg01no537_i23.b1 CHROMAT_FILE:
MSMg01no537_i23.b1 PHD_FILE: MSMg01no537_i23.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:15:57 2005
         (570 letters)



>mm_chr14_32760019_32760988
          Length = 970

 Score = 1033 bits (534), Expect = 0.0
 Identities = 558/566 (98%)
 Strand = Plus / Minus

                                                                       
Query: 4   ggaattcaccaggtattctcgctcagttgactagcaaccccaaagatccacctgcttctt 63
           |||||||||||||||  || ||||||||||||||||||||||||||||||||||||||||
Sbjct: 895 ggaattcaccaggtaagctggctcagttgactagcaaccccaaagatccacctgcttctt 836

                                                                       
Query: 64  cttagctagtgctgagatttcaagagtgggggttgttttctctttttaatgtgggttctg 123
           ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 835 cttagctagtgctgagattacaagagtgggggttgttttctctttttaatgtgggttctg 776

                                                                       
Query: 124 ggaatcaaacgcaagtccttgcgcttgcaagacaaagatgatagcaagcaaactgtctcc 183
           |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 775 ggaatcaaacacaagtccttgcgcttgcaagacaaagatgatagcaagcaaactgtctcc 716

                                                                       
Query: 184 cccgctcagtggttgttctaagccattcagttctgaggcgatttgtaatgcttccgaagg 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 715 cccgctcagtggttgttctaagccattcagttctgaggcgatttgtaatgcttccgaagg 656

                                                                       
Query: 244 ctgaaacagatgacatcagtgtcgactgacaaggagctcatggaagtaaatcttcaggct 303
           |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 655 ctgaaacagatgacatcagtgtcgactgacaaggagctcacggaagtaaatcttcaggct 596

                                                                       
Query: 304 gactcatgagcccctcagataaatcagaaatgaagtcactagcaatccaagtgagggacg 363
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 595 gactcatgagcccctcagataaatcagaaatgaagtcactagcaatccaagtgagggacg 536

                                                                       
Query: 364 tgagggagatgacttggtaagtctgctcctttatagggaagcagttttctacttggtggc 423
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 535 tgagggagatgacttggtaagtctgctcctttatagggaagcagttttctacttggtggt 476

                                                                       
Query: 424 cttgagctccctatcccaaagaaggccctgactttattcatatagctgttcacatgattc 483
           |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 475 cttgagctccctatcccaaagaaggccctggctttattcatatagctgttcacatgattc 416

                                                                       
Query: 484 agcttttgttcctcctcagccatggcccctccccctctgcctctctccccctctcccccc 543
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 415 agcttttgttcctcctcagccatggcccctccccctctgcctctctccccctctcccccc 356

                                     
Query: 544 tctccctcttcccctctccccctttc 569
           ||||||||||||||||||||||||||
Sbjct: 355 tctccctcttcccctctccccctttc 330


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 46
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 570
Length of database: 970
Length adjustment: 10
Effective length of query: 560
Effective length of database: 960
Effective search space:   537600
Effective search space used:   537600
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no537_i23.g1 MSMg01no537_i23.g1 CHROMAT_FILE:
MSMg01no537_i23.g1 PHD_FILE: MSMg01no537_i23.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:15:57 2005
         (585 letters)



>mm_chr14_32621924_32622908
          Length = 985

 Score = 1073 bits (555), Expect = 0.0
 Identities = 561/563 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   caacaataagcacaaaaggatatcctacttggggtgtttgatgccttatcactaaatatg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 caacaataagcacaaaaggatatcctacttggggtgtttgatgccttatcactaaatatg 260

                                                                       
Query: 61  caaggttgtgtggaaaccaaccatattatttaggcaattgctattagtaactttatactg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 caaggttgtgtggaaaccaaccatattatttaggcaattgctattagtaactttatactg 320

                                                                       
Query: 121 aaagcccatcttactatctgacataagcatctctaactatgtctgaggtggtgttttcta 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aaagcccatcttactatctgacataagcatctctaactatgtctgaggtggtgttttcta 380

                                                                       
Query: 181 tctgtaactcaacaacccaacctttcatattatttaacctgttcttcacctttggctagc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tctgtaactcaacaacccaacctttcatattatttaacctgttcttcacctttggctagc 440

                                                                       
Query: 241 agcccagaatgcaaacttgtgggatcactgcagatgctgtaatgtgaaatcttagttgcc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 agcccagaatgcaaacttgtgggatcactgcagatgctgtaatgtgaaatcttagttgcc 500

                                                                       
Query: 301 attctttaagattgttattattatttgtgtatatatgtgtatttgtatggattgtgtgta 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 attctttaagattgttattattatttgtgtatatatgtgtatttgtatggattgtgtgta 560

                                                                       
Query: 361 caagggtgcccatgaaggccagataatagtgttggagcccttggagctggagttataaat 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 caagggtgcccatgaaggccagataatagtgttggagcccttggagctggagttataaat 620

                                                                       
Query: 421 ggccgtgagctgctagacgtgggtgctaggaactgaactcaagtcctctgcaagagcagg 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 ggccgtgagctgctagacgtgggtgctaggaactgaactcaagtcctctgcaagagcagg 680

                                                                       
Query: 481 aagtgtccttaaccactgcgctgatactctagactcgtcttctttctctctctctcgctc 540
           |||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 681 aagtgtccttaaccgctgcgctgatactctagactcgtcttctttctctctctctctctc 740

                                  
Query: 541 tctctctctctctctctctctct 563
           |||||||||||||||||||||||
Sbjct: 741 tctctctctctctctctctctct 763


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 45
Number of extensions: 14
Number of successful extensions: 14
Number of sequences better than 10.0: 1
Number of HSP's gapped: 14
Number of HSP's successfully gapped: 1
Length of query: 585
Length of database: 985
Length adjustment: 10
Effective length of query: 575
Effective length of database: 975
Effective search space:   560625
Effective search space used:   560625
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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