Query= MSMg01no538_d11.b1 MSMg01no538_d11.b1 CHROMAT_FILE:
MSMg01no538_d11.b1 PHD_FILE: MSMg01no538_d11.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:16:49 2005
(703 letters)
>mm_chr14_112946475_112947575
Length = 1101
Score = 1265 bits (654), Expect = 0.0
Identities = 688/700 (98%), Gaps = 3/700 (0%)
Strand = Plus / Minus
Query: 5 gaattcacagtctggttatggctctcatcacattccttcatcagaggaaataaaagagac 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 780 gaattcacagtctggttatggctctcatcacattccttcatcagaggaaataaaagagac 721
Query: 65 aattataaacagtacttatttcctgattaatatatgatactcatcaataaccatacagtc 124
|||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||
Sbjct: 720 aattataaacagtacttatttcctgattaatatacgatactcatcaataaccat--agtc 663
Query: 125 ctcagtcctttacttctcaggtctcaagttctacttgatatcattgtctatacaacaaat 184
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 662 ctctgtcctttacttctcaggtctcaagttctacttgatatcattgtctatacaacaaat 603
Query: 185 tattcctagtttctaatttttgtttagaataaccacattgaattaactgactaattgact 244
|||| |||||||||||||||||||||| ||||||||||||||||||||||||||| ||||
Sbjct: 602 tatttctagtttctaatttttgtttagcataaccacattgaattaactgactaatggact 543
Query: 245 cattgggaaatgatgaattcatctacatatttacagtgcttttacttctatatattacaa 304
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 542 cattgggaaatgatcaattcatctacatatttacagtgcttttacttctatatattacaa 483
Query: 305 gtctaagacttattctaaatgaagagatggctttcccccaaacaaccagaaactactgtt 364
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 482 gtctaagacttattctaaatgaagagatggttttcccccaaacaaccagaaactactgtt 423
Query: 365 atatggtaagagttcaaatgattttttaagtttcaagctatagattacttcctatctatt 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 422 atatggtaagagttcaaatgattttttaagtttcaagctatagattacttcctatctatt 363
Query: 425 agtaggcatcctgtttgtgtttatgaatttggaaaatttctcataagaagtgaaaaagga 484
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 362 agtaggcatcctgtttgtgtttatgaatttggataatttctcataagaagtgaaaaagga 303
Query: 485 aaatgtttgtttcccattatgaaagagtttgagaaacttttttt-aataagcattttatt 543
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 302 aaatgtttgtttcccattatgaaagagtttgagaaactttttttaaataagcattttatt 243
Query: 544 tgtttacatttcaaatgatatccctgttcctgtttacccctccgcaaccccctccctatg 603
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 242 tgtttacatttcaaatgatatccctgttcctgtttacccctccacaaccccctccctatg 183
Query: 604 acatgcccacttccctcttccctttgcccttatgggaaatgggaagctctttagaatttt 663
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 182 acatgcccacttccctcttccctttgcccttatgggaaatgggaagctctttagaatttt 123
Query: 664 aatactgttcttcctttaatgcaggtaagttatatagcaa 703
||||||||||||||||||||||||||||||||||||||||
Sbjct: 122 aatactgttcttcctttaatgcaggtaagttatatagcaa 83
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 4
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 703
Length of database: 1101
Length adjustment: 10
Effective length of query: 693
Effective length of database: 1091
Effective search space: 756063
Effective search space used: 756063
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)
| Query= MSMg01no538_d11.g1 MSMg01no538_d11.g1 CHROMAT_FILE:
MSMg01no538_d11.g1 PHD_FILE: MSMg01no538_d11.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:16:49 2005
(681 letters)
>mm_chr14_112915892_112916972
Length = 1081
Score = 982 bits (508), Expect = 0.0
Identities = 619/704 (87%), Gaps = 78/704 (11%)
Strand = Plus / Plus
Query: 1 aaaagtctgaacaagttgaagtgcccaagtgagtacaattcagtcctacttgggagagag 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 233 aaaagtctgaacaagttgaagtgcccaagtgagtacaattcagtcctacttgggagagag 292
Query: 61 aagaaatgagtattagtaagcaaggaaataaataagtgttataattaaatttttaaa--- 117
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 293 aagaaatgagtattcgtaagcaaggaaataaataagtgttataattaaatttttaaattt 352
Query: 118 -aggctgccctccaa------aat-------------atcttctgttctacatcttttta 157
| | | || ||| |||||||||||||||||||||||
Sbjct: 353 aa---t----tataatttttaaatttaattaaatttaatcttctgttctacatcttttta 405
Query: 158 cttaagaatttaaccttaatacttcttgtttgtgtcctcttccttgagcctcttggtctt 217
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 406 cttaagaatttaaccttaatacttcttgtttgtgtcctcttccttgagcctcttgggctt 465
Query: 218 tccacctacttcaagcacagagtttgggagaagcatcaccatgtgttgtctaaagctagg 277
|| |||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||
Sbjct: 466 tctacctacttcaagcacagagtttgggagaaggatcactatgtgttgtctaaagctagg 525
Query: 278 tcatccaaacagaaacataaatttcattttctctcttgagatatttgattttggatgtca 337
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 526 tcatccaaacagaaacataaatttcattttctctcttgagatatttgattttggatgtca 585
Query: 338 gctgtatctatattctaaaaattaaaaggaaaaccacttgagaaacacacaagcacacac 397
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 586 gctgtatctatattctaaaaattaaaaggaaaaccacttgagaaacacacaagcacacac 645
Query: 398 actacacccaccacacacacacacacacacacacacacacacacacacacacacactcac 457
|||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 646 actacacccaccacacacacacacacacacacacacacacacacacacaca--------- 696
Query: 458 atacacacacacacacacacacacacacacacacacacaggaaagcacctgaaattttac 517
|||||||||||||||||||||
Sbjct: 697 ---------------------------------------ggaaagcacctgaaattttac 717
Query: 518 agacaattaaaagtttgactgtttgtcatcatcaattgccaaaagaaagatataaaatgt 577
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 718 agacaattaaaagtttgactgtttgtcatcatcaattgccaaaagaaagatataaaatgt 777
Query: 578 ttccagaccctcaactctcatgtgctatgttccattaaatttagattgttcttctttatg 637
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 778 ttccagaccctcaactctcatgtgctatgttccattaaatttagattgttcttctttatg 837
Query: 638 acaaaggctttttgatgagagcaagttaaatgtttcttatctaa 681
||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 838 acaaaggctttttgatgagagcaagttaaatgtttcttatctaa 881
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 63
Number of extensions: 27
Number of successful extensions: 27
Number of sequences better than 10.0: 1
Number of HSP's gapped: 18
Number of HSP's successfully gapped: 1
Length of query: 681
Length of database: 1081
Length adjustment: 10
Effective length of query: 671
Effective length of database: 1071
Effective search space: 718641
Effective search space used: 718641
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
