BAC Information

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BAC

Clone NameMSMg01-538E16
Chromosome14 (Build37)
Map Location 46,663,008 - 46,663,638
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100041591, 5730420B22Rik, LOC100041611, 6330416L11Rik, Ero1l, Psmc6, Styx, Gnpnat1, Plekhc1, EG382884, Ddhd1, EG637379, LOC666834, LOC100041685, LOC625377
Downstream geneLOC218963, LOC100041724, Bmp4, LOC100041732, LOC100041754, Cdkn3, Cnih, Gmfb, Cgrrf1, Samd4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-538E16.T7 (MSMg01no538_e16.b1)MSMg01-538E16.TJ (MSMg01no538_e16.g1)
ACCAG605056AG605057
length746745
length of high quality
(start - end)
634 (35 - 668)517 (64 - 580)
definitionCHROMAT_FILE: MSMg01no538_e16.b1 PHD_FILE: MSMg01no538_e16.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:16:54 2005CHROMAT_FILE: MSMg01no538_e16.g1 PHD_FILE: MSMg01no538_e16.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:16:54 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
GXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCCATCTA
CAAGGAGGCTGGTTGTTTTGAAATTTGAAATATTCTAGCTCCTGTTGGAT
ATGAATTTTAACTGGAAGGATTGTTACCATTTTAGGAGTTTGGGGTCCAG
TTCATTATTTTTCTCTGCCACTCTTGTGACCTCCAGGTGGGACACACAAT
GCACACTTTAACAGGTATTGGCAAATGCTACATATGTAGTTTATTCTCCC
CACTCTTTGCTTGGACAAAATTATTTACATCCATATTAATTCAATCCTGA
ATTTATTTTAGAAGCAGCTGAGGGAAGCCACATTTATCTTTGTCACTATG
CAGCCAGCTAAGAATTAAGGAGGCCGTGTGGTTAGAGGATTGTTGAAAAT
GCCCAGCTCATTAGAGATGGTCAAGTTTTGAAAGAGTCGATTGAAGTGTA
ATCAAACTAATGCGCTGTACATGGTTATCAGGGAGTTCACTGCCCCGTGA
GGTTACCATCCTTTTGCATGGCATTGTCTTTCTCTGTGAGGGCTCTGTCA
TGGGAGGCTTCAGACTAATAGCATTAAACTGCTGCCCTGAGAATCTTTCT
CTTGAGTCCCTAACCTCAGTCCCTTCCTATCTTAGAAATCATGGTCCCTT
TCTCTGAACAGCAGCTGAAAATTCAGAGCAGACATCAACACACACACACA
CACACACACACACACATACACACACACACACGCACACATGTACACG
GGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXTCACCTGAGGAATACCGAATGGCAGAGAAGCACTTGA
AAAAATGTTCAACATCCTTAATCATCAGGGAAGTGCAAATCAAAACAACC
CTGAGATTCCACCTCACACCAGTCAGAATGGCTAAGATCAAAAATTCAGG
TGACCTTTTGACTTTTAACATGAGTGGATTTTGAATTCTGTCAAATGCTT
TCTCAGCATCTAATGAAATGATCATGCAGGTTTTCCCCCTTTGAGTCTGT
TTATGTCGTGGATGATGTTGATGGATTTCTATATATTGAACCACCCCTGC
ATCCCCGGAATGAAGAGGTGGATGATAGTTTTGATGTGTTCTTGGATTTG
GTTTGCAAGATTTTTTTTTCCATTTTTTATTAGGTATTTAGCTCATTTAC
ATTTCCAATGCTATACCAAAAGTCCCCCATACCCACCCACCCCCACTCCC
CTACCCACCCACTCCCCCTTTTTGGCCCTGGCGTTCCCCTGTACTGGGGC
ATACAAAGTTTGCGTGTCCAATGGGCCTCTCTTTCCAGTGATGGCCGATT
AAGCCATCTTTTGATACATATGCAGCTAGAGTCAAGAGCTCCGGGGTACT
GGTTAGTTCATAATGTTGTTCCACCTATAGGGGTGCAGAACCTTTAACTC
CTTGGGGTCTTCTCCAGCTCCTCCTTGGTAGCCCTGGGAATCTCN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no538_e16.b1 MSMg01no538_e16.b1 CHROMAT_FILE:
MSMg01no538_e16.b1 PHD_FILE: MSMg01no538_e16.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:16:54 2005
         (634 letters)



>mm_chr14_46662804_46663838
          Length = 1035

 Score = 1205 bits (623), Expect = 0.0
 Identities = 629/631 (99%), Gaps = 1/631 (0%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattccatcta-caaggaggctggttgttttgaaatttgaaatattctagctcctgttg 63
           |||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattccatcaaacaaggaggctggttgttttgaaatttgaaatattctagctcctgttg 264

                                                                       
Query: 64  gatatgaattttaactggaaggattgttaccattttaggagtttggggtccagttcatta 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 gatatgaattttaactggaaggattgttaccattttaggagtttggggtccagttcatta 324

                                                                       
Query: 124 tttttctctgccactcttgtgacctccaggtgggacacacaatgcacactttaacaggta 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 tttttctctgccactcttgtgacctccaggtgggacacacaatgcacactttaacaggta 384

                                                                       
Query: 184 ttggcaaatgctacatatgtagtttattctccccactctttgcttggacaaaattattta 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 ttggcaaatgctacatatgtagtttattctccccactctttgcttggacaaaattattta 444

                                                                       
Query: 244 catccatattaattcaatcctgaatttattttagaagcagctgagggaagccacatttat 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 catccatattaattcaatcctgaatttattttagaagcagctgagggaagccacatttat 504

                                                                       
Query: 304 ctttgtcactatgcagccagctaagaattaaggaggccgtgtggttagaggattgttgaa 363
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 ctttgtcactatgcagccagctaagaattaaggaggccgtgtggttagaggattgttgaa 564

                                                                       
Query: 364 aatgcccagctcattagagatggtcaagttttgaaagagtcgattgaagtgtaatcaaac 423
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 aatgcccagctcattagagatggtcaagttttgaaagagtcgattgaagtgtaatcaaac 624

                                                                       
Query: 424 taatgcgctgtacatggttatcagggagttcactgccccgtgaggttaccatccttttgc 483
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 taatgcgctgtacatggttatcagggagttcactgccccgtgaggttaccatccttttgc 684

                                                                       
Query: 484 atggcattgtctttctctgtgagggctctgtcatgggaggcttcagactaatagcattaa 543
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 atggcattgtctttctctgtgagggctctgtcatgggaggcttcagactaatagcattaa 744

                                                                       
Query: 544 actgctgccctgagaatctttctcttgagtccctaacctcagtcccttcctatcttagaa 603
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 745 actgctgccctgagaatctttctcttgagtccctaacctcagtcccttcctatcttagaa 804

                                          
Query: 604 atcatggtccctttctctgaacagcagctga 634
           |||||||||||||||||||||||||||||||
Sbjct: 805 atcatggtccctttctctgaacagcagctga 835


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 634
Length of database: 1035
Length adjustment: 10
Effective length of query: 624
Effective length of database: 1025
Effective search space:   639600
Effective search space used:   639600
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)