Query= MSMg01no539_n14.b1 MSMg01no539_n14.b1 CHROMAT_FILE:
MSMg01no539_n14.b1 PHD_FILE: MSMg01no539_n14.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:18:56 2005
(673 letters)
>mm_chr14_22142339_22143411
Length = 1073
Score = 1259 bits (651), Expect = 0.0
Identities = 665/670 (99%)
Strand = Plus / Plus
Query: 4 ggaattcagcatgcattgagacttattgttcttttctcaattatggttgtttagtaagcc 63
||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||
Sbjct: 204 ggaattcagcatgcattgagacttaatgttcttttctcaattatggttgattagtaagcc 263
Query: 64 agtgtgatggctgatgaggcaaaggcaggaggattgccaagagttcaaggccagcttaga 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 agtgtgatggctgatgaggcaaaggcaggaggattgccaagagttcaaggccagcttaga 323
Query: 124 ctatagatccagaccctgccttttaaaaaagtaagaaaaataaatgaatgaataattaaa 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 ctatagatccagaccctgccttttaaaaaagtaagaaaaataaatgaatgaataattaaa 383
Query: 184 taaaacaaaacctttacttaaccctattattgtattatatttcccacttttaaatgaaag 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 taaaacaaaacctttacttaaccctattattgtattatatttcccacttttaaatgaaag 443
Query: 244 gcctgagttcataggttctatcgactgaagaagctttgcttcttctctaggatgtaaact 303
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 gcctgagttcataggttctatcgactgaagaagctttgcttcttctctaggatgtaaact 503
Query: 304 ctttagctgttatgttttggattaattttttaacatcttcaaagtttaaacatcttcttt 363
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 ctttagctgttatgttttggattaattttttaacatcttcaaagtttaaacatcttcttt 563
Query: 364 agcagcatcatttttcaactaaactcacctgcaatcggcttaataaaggccattctacgt 423
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 agcagcatcatttttcaactaaactcacctgcaatcggcttaataaaggccattctacgt 623
Query: 424 gcaggtaattataaattatatctattgatgccagctcataccagctgctttgtagtcatt 483
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 gcaggtaattataaattatatctattgatgccagctcataccagctgctttgtagtcatt 683
Query: 484 gtctacctgtacatgactaaagaacttgattgttcttgtttttcattattattaaattaa 543
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 684 gtctacctgtacatgactaaagaacttgattattcttgtttttcattattattaaattaa 743
Query: 544 gaagtttttgaatagagtcattttgaaaatggttcttaagagtaataccttttaaggttt 603
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 744 gaagtttttgaatagagtcattttgaaaatggttcttaagagtaataccttttaaggttt 803
Query: 604 cctaatcactagatgattaacctgccaggattaagtacactcaactttgcctcangatgc 663
|||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 804 cctaatcactagataattaacctgccaggattaagtacactcaactttgcctcaggatgc 863
Query: 664 tcagttctca 673
||||||||||
Sbjct: 864 tcagttctca 873
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 673
Length of database: 1073
Length adjustment: 10
Effective length of query: 663
Effective length of database: 1063
Effective search space: 704769
Effective search space used: 704769
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no539_n14.g1 MSMg01no539_n14.g1 CHROMAT_FILE:
MSMg01no539_n14.g1 PHD_FILE: MSMg01no539_n14.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:18:57 2005
(677 letters)
>mm_chr14_22306957_22308033
Length = 1077
Score = 1002 bits (518), Expect = 0.0
Identities = 538/545 (98%)
Strand = Plus / Minus
Query: 133 caggcagaccccagagcaaaggcctgcaggaagaggcagacaaggccaaagtttctacaa 192
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 593 caggcagaccccagagcaaaggcctgcaggaagaggcagacaaggccaaagtttctacaa 534
Query: 193 actaatagacttgcttctgacaaggatcctagctggcaggccagcattattgccatactg 252
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 533 actaatagacttgcttctgacaaggatcctagctggcaggccagcattattgccatactg 474
Query: 253 gcttaagaatggcccgtgtagctgaagcatcgctccaagaatggtgaccctagaccatcg 312
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 473 gcttaagaatggcccgtgtagctgaagcatcactccaagaatggtgaccctagaccatcg 414
Query: 313 gtgctcgtgcagaaattgcagaagtgctgcttttgtctaagcatccctttcagccctctt 372
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 413 gtgctcgtgcagaaattgcagaagtgctgcttttgtctaagcatccctttcagccctctt 354
Query: 373 tgatgcatacttggccatggatgccacagtggcaagtgtaggtcaggggacaattcaggg 432
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 353 tgatgcatacttggccatggatgccacagtggcaagtgtaggtcaggggacaattcaggg 294
Query: 433 tttgatttttgcctaccatgtaggtcccaaggacccaacagggatcatcaggcttggggg 492
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 293 tttgatttttgcctaccatgtaggtcccaaggacccaacagggatcatcaggcttggggg 234
Query: 493 agtggcaagcacccttactccctgagccgtctggctaggcatatgttacattttaacagt 552
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 233 agtggtaagcacccttactccctgagccgtctggctaggcatatgttacattttaacagt 174
Query: 553 attttagtttttgatttttcatatgtagtccaggtatggttgagcccttgaaagacccac 612
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 173 attttagtttttgatttttcatatgtagttcaggtatggttgagcccttgaaagacccac 114
Query: 613 aacgtgaggactcccccacattctgactcangagaggcgacaccccataatcaccaacga 672
|||||||||||||||||||||||||||||| ||||||||||| |||| |||||||||| |
Sbjct: 113 aacgtgaggactcccccacattctgactcaggagaggcgacatcccaaaatcaccaacaa 54
Query: 673 gaaac 677
|||||
Sbjct: 53 gaaac 49
Score = 310 bits (160), Expect = 3e-88
Identities = 163/164 (99%)
Strand = Plus / Minus
Query: 216 ggatcctagctggcaggccagcattattgccatactggcttaagaatggcccgtgtagct 275
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1077 ggatcctagctggcaggccagcattattgccatactggcttaagaatggcccgtgtagct 1018
Query: 276 gaagcatcgctccaagaatggtgaccctagaccatcggtgctcgtgcagaaattgcagaa 335
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1017 gaagcatcactccaagaatggtgaccctagaccatcggtgctcgtgcagaaattgcagaa 958
Query: 336 gtgctgcttttgtctaagcatccctttcagccctctttgatgca 379
||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 957 gtgctgcttttgtctaagcatccctttcagccctctttgatgca 914
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 2
Length of query: 677
Length of database: 1077
Length adjustment: 10
Effective length of query: 667
Effective length of database: 1067
Effective search space: 711689
Effective search space used: 711689
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
