NNAACCTGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCCAGGATCC
GCGGAATTCCATTTTGTATTTTAAAACGCTGTAAATAAATTCAACAGACA
AAATTTTCTGGCACACTAAGTTAGGGGAAGTAAAAGGTTTTTCACAGGCC
TTACCAGAATGGAGAGTTGCTCTTCCCACTCCTTGAACCTGAACAGGAGA
TGGGCAGTGACAGTCTGAGTGTCTCTTCTTTAAGTGACCATTGCACACCC
TGGCTTGCAGAATCACTTTCATGAGATAGAAACCCTCTCTTATTGATGCA
TTCCTCTTGGTGGCTTTAGCATTAGCTGAATCTGTGTTATTTCTGTTTCT
TCTAGGAAAAGTTTATATTTTTTGTAATTTTTCTTTGCTTTAAATATATA
AAATTCCTAACAGCCTAGAATTCCAAATTTTGAGTCCCACTGTAAAATTC
TAGCAAAATATATACCATTTGAATATTGCATTTAGTTTGAGTTTAGTAAA
GCAAGGGAAGGGTAAACAAAAGAAAATGAAATGAATGATTAAGTTGAAAA
TGTATGGAAAAGTTCTGCTATGCAATATAAGAAATTACTATGTGGAATTA
GCATATAAACATGTGAATTTTAATAACTTGTATTACTCTAACAAATGGAT
CTCATGTTTAGCATAGGGCTCACACAGTGTCTTCCCATCTCTGTGAGTGG
GTCTTGACTCGGGTCTGAAAGTTGTCCTTT

TTTCTACATGATGTGNGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXTGCAGTAAACCCATCTGGTCC
TGGGCTTTTTTATTTTTTGGTAAGAGACTTTTAATGACTGCTTCTATTTC
TTTAGGGGATATGGGACTGTTTAGGTCATTAATCTGATCCTGATTTAACT
TTGGTACTTGGTATTTGTCTAGAAATTTGTCTATGTCATCCAGGTTTTCT
AGTTTTGTTGAGTATGCCTCTTGTAGTAGGATCTGATGATGTTTTGGATT
TCTTCAGGTTCTGTCATTATGTCTTCCTTTTCATTTCTGATTTTCTAATT
AGGATACTGTCCCTGTGTCCTCTAGTGAATCTGATTAAGAGTTTATCTTG
TTGTTTTTTTTCAAGGACCAGCTCCTGGTTTGGTTGATTCTTTGTATAAT
TCTTTTTGTTTCCACTTGGTTTATTTCAGCCCTGAGTTTGATTATTTCCT
GCTGTCTACTCCTCTTGGTTGAATTTGCTTCCTTTAGTTCTAGAGCTTTT
AGATGTGTTCTCAAGCAGCTAGTGTGTGCTCTCTCTAGTTTCTTTTTGGA
GGTACTCAGCACTATGAGTTTTCCTCTTAAGAATGCTTTCTTTGTGTCAC
ATAAGTTTGGGTATGTTGTGGCTTCATTTTCATTAAACTCTAAAATGTCT
TTAATTTCTTTATTTCTTTCTTGACCAAGGTAT

Query= MSMg01no540_d06.b1 MSMg01no540_d06.b1 CHROMAT_FILE:
MSMg01no540_d06.b1 PHD_FILE: MSMg01no540_d06.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:19:24 2005
         (683 letters)



>mm_chr14_16397942_16399024
          Length = 1083

 Score = 1147 bits (593), Expect = 0.0
 Identities = 650/677 (96%), Gaps = 15/677 (2%)
 Strand = Plus / Plus

                                                                       
Query: 7   gaattccattttgtattttaaaacgctgtaaataaattcaacagacaaaattttctggca 66
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 207 gaattccattttgtattttaaaacgctgtaaataaattcaacagacaaaattttctggcg 266

                                                                       
Query: 67  cactaagttaggggaagtaaaaggtttttcacaggccttaccagaatggagagttgctct 126
           || |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 267 cagtaagttaggggaagtaaacggtttttcacaggccttaccagaatggagagttgctct 326

                                                                       
Query: 127 tcccactccttgaacctgaacaggagatgggcagtgacagtctgagtgtctcttctttaa 186
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 327 tcccactccttgaacctgaacaggagatgggcagtgacagtctaagtgtctcttctttaa 386

                                                                       
Query: 187 gtgaccattgcacaccctggcttgcagaatcactttcatgagatagaaaccctctcttat 246
           ||||   |       |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 387 gtga---t-------cctggcttgcagaatcactttcatgagatagaaaccctctcttat 436

                                                                       
Query: 247 tgatgcattcctcttggtggctttagcattagctgaatctgtgttatttctgtttcttct 306
           ||||| ||||||||||||| |||||||| ||||||||||||||||||||||||| |||||
Sbjct: 437 tgatgtattcctcttggtgactttagcaatagctgaatctgtgttatttctgttccttct 496

                                                                       
Query: 307 aggaaaagtttatattttttgtaatttttctttgctttaaatatataaaattcctaacag 366
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 497 aggaaaagtttatattttttgtaatttttctttgctttaaatatataaaattcctaacag 556

                                                                       
Query: 367 cctagaattccaaattttgagtcccactgtaaaattctagcaaaatatataccatttgaa 426
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 557 cctagaattccaaattttgagtcccactgtaaaattctagcaaaatatataccatttgaa 616

                                                                       
Query: 427 tattgcatttagtttgagtttagtaaagcaagggaagggtaaacaaaagaaaatgaaatg 486
           ||||||||||||||||||||||||||||||||||||||||||||||||     |||||||
Sbjct: 617 tattgcatttagtttgagtttagtaaagcaagggaagggtaaacaaaa-----tgaaatg 671

                                                                       
Query: 487 aatgattaagttgaaaatgtatggaaaagttctgctatgcaatataagaaattactatgt 546
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 672 aatgattaagttgaaaatgtatggaaaagttctgctatgcaatataagaaattactatgt 731

                                                                       
Query: 547 ggaattagcatataaacatgtgaattttaataacttgtattactctaacaaatggatctc 606
           ||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||
Sbjct: 732 ggaattagcatataaacatgtgaattttaataatttgtattactctaacaaagggatctc 791

                                                                       
Query: 607 atgtttagcatagggctcacacagtgtcttcccatctctgtgagtgggtcttgactcggg 666
           |||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 792 atgtttagcacagggctcacacagtgtcttcccatctctgtgagtgggtcttgactaggg 851

                            
Query: 667 tctgaaagttgtccttt 683
           |||||||||||||||||
Sbjct: 852 tctgaaagttgtccttt 868


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 683
Length of database: 1083
Length adjustment: 10
Effective length of query: 673
Effective length of database: 1073
Effective search space:   722129
Effective search space used:   722129
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)