Query= MSMg01no540_i19.b1 MSMg01no540_i19.b1 CHROMAT_FILE:
MSMg01no540_i19.b1 PHD_FILE: MSMg01no540_i19.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:19:51 2005
(474 letters)
>mm_chr14_35688724_35689596
Length = 873
Score = 890 bits (460), Expect = 0.0
Identities = 470/474 (99%), Gaps = 3/474 (0%)
Strand = Plus / Minus
Query: 1 caggcaggagggtccgaagttcaaggccagtctagactacatagtgagagtctgtctcaa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 738 caggcaggagggtccgaagttcaaggccagtctagactacatagtgagagtctgtctcaa 679
Query: 61 aaatcttttttttttttttgtaagcacaaaagctttgtggaaaataaacaagacagctaa 120
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 678 aaatc--ttttttttttttgtaagcacaaaagctttgtggaaaataaacaagacagctaa 621
Query: 121 agttaaaatagtctataaaaaaatatttgtagcaaagtggcttaagaacactgttaactc 180
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 620 agttaaaatagtctat-aaaaaatatttgtagcaaagtggcttaagaacactgttaactc 562
Query: 181 tgtacagtaaagagcttgtatgaatggttatttttcaaaagcttcaagatgccaccagat 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tgtacagtaaagagcttgtatgaatggttatttttcaaaagcttcaagatgccaccagat 502
Query: 241 gaatgggctgaacagaacatcgacctatggcatgacacagaggaaaaggttccatctctc 300
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 501 gaatgggctgaacagaacatcgacctatggcatgacacagaagaaaaggttccatctctc 442
Query: 301 tagaaatcaaataggaaatcgctttatatctattaaaataggcaaggaggaggaggaaac 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tagaaatcaaataggaaatcgctttatatctattaaaataggcaaggaggaggaggaaac 382
Query: 361 attcatgattgcatcattgaatgctggttaaattatcataaaactcatcttctcaatcac 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 attcatgattgcatcattgaatgctggttaaattatcataaaactcatcttctcaatcac 322
Query: 421 actcagatccaaatgactctttctgaaaacaattttgagtcactactattccaa 474
||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 actcagatccaaatgactctttctgaaaacaattttgagtcactactattccaa 268
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 474
Length of database: 873
Length adjustment: 10
Effective length of query: 464
Effective length of database: 863
Effective search space: 400432
Effective search space used: 400432
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no540_i19.g1 MSMg01no540_i19.g1 CHROMAT_FILE:
MSMg01no540_i19.g1 PHD_FILE: MSMg01no540_i19.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:19:51 2005
(659 letters)
>mm_chr14_35487581_35488639
Length = 1059
Score = 1259 bits (651), Expect = 0.0
Identities = 657/659 (99%)
Strand = Plus / Plus
Query: 1 tttttccccgtcgtctcctccgcctctagccgtcaccgagaggccttgcttcggggactc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tttttccccgtcgtctcctccgcctctagccgtcaccgagaggccttgcttcggggactc 260
Query: 61 ggtagcagaagcttccggggcgtccgaagcgacatccctttcctaggctgtgggggttgg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ggtagcagaagcttccggggcgtccgaagcgacatccctttcctaggctgtgggggttgg 320
Query: 121 gaggagaaaagttgcgtgagtgtccagcccgaggggtgtctcggctccagcctccgggcg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gaggagaaaagttgcgtgagtgtccagcccgaggggtgtctcggctccagcctccgggcg 380
Query: 181 cactcgcagcctcaggtgagggtttctgtttgcccattccactctcctctctttattgaa 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 cactcgcagcctcaggtgagggtttctgtttgcccattccactctcctctctttattgaa 440
Query: 241 gcccccctaatgcattaccttgggtgtctttcctggaagtggctaggtttctttacagct 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gcccccctaatgcattaccttgggtgtctttcctggaagtggctaggtttctttacagct 500
Query: 301 tcagtgtaaggaggttggttggttgttttgtataccctttccctaatttaaatcgcagtg 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tcagtgtaaggaggttggttggttgttttgtataccctttccctaatttaaatcgcagtg 560
Query: 361 cacttccatcaaaagtcagctgggctttgggatgaagcgaaggcctcccaaatcgaaaac 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 cacttccatcaaaagtcagctgggctttgggatgaagcgaaggcctcccaaatcgaaaac 620
Query: 421 actcagttgtgaaccttcttttcctttttagttaggactgttggtgaaatttgaagccag 480
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 aatcagttgtgaaccttcttttcctttttagttaggactgttggtgaaatttgaagccag 680
Query: 481 agcaagatagtgtgtctgaaatgtgcgtaaaacgtcatgccaaatatatatgctgaattt 540
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 aacaagatagtgtgtctgaaatgtgcgtaaaacgtcatgccaaatatatatgctgaattt 740
Query: 541 gtacatatgttaagcttagataatgccatcgcagtagtctgctgactttttaaaatggac 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 gtacatatgttaagcttagataatgccatcgcagtagtctgctgactttttaaaatggac 800
Query: 601 gttatggaaaacagtaaaagcaatcacgtaactcttgtactcatatctcctggattctg 659
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 801 gttatggaaaacagtaaaagcaatcacgtaactcttgtactcatatctcctggattctg 859
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 659
Length of database: 1059
Length adjustment: 10
Effective length of query: 649
Effective length of database: 1049
Effective search space: 680801
Effective search space used: 680801
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
