BAC Information

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BAC

Clone NameMSMg01-540K13
Chromosome14 (Build37)
Map Location 32,292,528 - 32,292,997
singlet/doubletsinglet
Overlap geneMettl6
Upstream geneCacna1d, Dcp1a, Tkt, Prkcd, EG665466, Rft1, Sfmbt1, Tmem110, Mustn1, Itih4, Itih3, Itih1, Nek4, Spcs1, Glt8d1, Gnl3, Pbrm1, EG432834, Nt5dc2, Stab1, Nisch, Tnnc1, Sema3g, Phf7, Bap1, Dnahc1, Capn7, Sh3bp5
Downstream geneEaf1, Colq, Hacl1, Btd, Ankrd28, Galntl2, Dph3, Oxnad1, Msmb, Ncoa4, Timm23, Parg, LOC665601, Ogdhl, 1700024G13Rik, Chat, Slc18a3, LOC100040834
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-540K13.T7 (MSMg01no540_k13.b1)MSMg01-540K13.TJ (MSMg01no540_k13.g1)
ACCAG606858AG606859
length7461,181
length of high quality
(start - end)
506 (52 - 557)---
definitionCHROMAT_FILE: MSMg01no540_k13.b1 PHD_FILE: MSMg01no540_k13.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:20:00 2005CHROMAT_FILE: MSMg01no540_k13.g1 PHD_FILE: MSMg01no540_k13.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:20:00 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
GTTTTACTTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XCGCGGAATTCCTGGTGCAGCTCTTTGTGGATGCAGGTTATGAAGAAGTG
GTGAACGAGTATGTGTTTCGAGAGACAGTGAATAAAAAAGAGGGCCTGTG
TGTGCCTCGAGTTTTCCTTCAGAGCAAGTTCCGGAAGCCTCCGAAGGACC
CAGCCCCTACCAGTGACTCTGCTTCACTTTGAAGAAAAGGATGTTAAACT
ATTTTGTATTTTTTTTATATTCTGAATTTTTGAAAATTGCATGTGTTATT
TTTGTACTGAGAACAAGTGAAGACTGGGGAGTTGGCTCAGCAGGTAAAGG
TGCTAGCTGTGCAAGCTTAGCAACCTGGGTGGATCAGCAGTCTGTGTTGA
GCAGGAGAGATGGCTCAGTGATCAAGAGTGTTGGCTGCTCTTGGGCAGGG
CCTGGGTTCGGTTTCCAGCACCCACATGGCAGCTCACTTCCATCAGTAAT
TCCAGTCCCAGGGTATTGAGTGCCCTCTTCTGACCTCTGCAAGTGGTGCA
CAGACATACATGCAGGCTAACACCCCAATTACAAAAGAAAAAAATCCAGG
TTTGGCAATTTGAGGTTATCCTAGTACTCCTACCTCAGTACTCCTACCTC
ATTACTCCTACCTCTCAGATGAAAAACCGAGACCGGAAGAACCACTCTGG
TAGCCTCCTGAAGCAGCCCAGCCTGGGATTTACCCGGGTGGGGAAN
TTGTAGTTTTTGAGCAGACATCCTAAGTCAGTAACTAACAAAGGCCTCTT
TCTACCCTACACTGNTACGGACACCGCGTAGCAAATATCGTATACAATGA
TATTTTCTGTATTAGGCGCGGCCATTAAACTAAATACCACCCATGAACGT
GAGTCCGCTCAAATAGTCCCGCGTCATCTTCGCGTGGCGGAGGTGGCGTC
ATGGCGGGAGTTCGAGTATTAGTTAGCGCGCGCGCACATATTCTATGAGC
TCTCGTTCGAGTAGCGCGAACTACTCTGTTGGTGTCTGACCCCGCTGCCG
CTAGCGCTCGCGTGCACGCGTAGCTGTTATATGCCGGCGTGTGCGCGCGC
GACAATTGAGGTTGTGTTAGGTCAGTGAATAACGGCGGAAGAGANTGTAC
TCGAGCTCTGCTTATTCCCGTGAAGTCGCGCGTGTGTATATAGAGTATAG
TGAGATCGCAGCAATTTTATTCTCTTCGTGTACGAGCCAGCGTATGTCAC
ATGGCATCGGTATGATTGTCTGCGATGTATCATCGTAGCCCGTCCTCGCG
AATTNTCACCTATATTGTGGACGCTGATGCCAGCCGCGTCGCCCCCGTCC
GTACTCACTGATAAGATTTAATATATCCGCAGCGATGCGATAGCCGCTCA
GCGTTCGCACTATTCCGCGTCATATATCTTATTGCGGTGCTTTGTGAGAC
TATGAGACGAGCAGAAGGGGAACAGCGACACAACACCTAATAGTAGATAA
ACATGCCACACACATACAGTAAGAGAAAGTAATAGGAGGCGCTGATAAAA
AGAACGACTAAGAGCTGAGTCTGACGAGCATACTGACAATGACGTGATAC
GATGTGATGATGACAGTTTATTACTAGATATGGTTAAGACGGTGCGTTAG
TAATGGAGAGTTAATAATATATTAGCAGCATGATTAAATATGTGCCCCCT
CTACCAAGATCACCTATATGAATAGCGAGGATGACGGAAGGCGGTAGAAG
TGACGAGAAATACATTCAGCGGCTGTCAGCGTAGTGCTATCTGCGACGTA
TTTATGAGNGACGCCGACGCCAGCATCAGCAGCTCTTTATAAATACAATA
AACACCACATCTCCTATAATCTTTATCAATGATCCATGTTTACAGTACAT
AAAATAGGATATCAGACATTCTAATCTATGT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no540_k13.b1 MSMg01no540_k13.b1 CHROMAT_FILE:
MSMg01no540_k13.b1 PHD_FILE: MSMg01no540_k13.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:20:00 2005
         (506 letters)



>mm_chr14_32292528_32293433
          Length = 906

 Score =  901 bits (466), Expect = 0.0
 Identities = 469/470 (99%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcctggtgcagctctttgtggatgcaggttatgaagaagtggtgaacgagtatgtg 64
           |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 470 gaattcctggcgcagctctttgtggatgcaggttatgaagaagtggtgaacgagtatgtg 411

                                                                       
Query: 65  tttcgagagacagtgaataaaaaagagggcctgtgtgtgcctcgagttttccttcagagc 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 410 tttcgagagacagtgaataaaaaagagggcctgtgtgtgcctcgagttttccttcagagc 351

                                                                       
Query: 125 aagttccggaagcctccgaaggacccagcccctaccagtgactctgcttcactttgaaga 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 350 aagttccggaagcctccgaaggacccagcccctaccagtgactctgcttcactttgaaga 291

                                                                       
Query: 185 aaaggatgttaaactattttgtattttttttatattctgaatttttgaaaattgcatgtg 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 290 aaaggatgttaaactattttgtattttttttatattctgaatttttgaaaattgcatgtg 231

                                                                       
Query: 245 ttatttttgtactgagaacaagtgaagactggggagttggctcagcaggtaaaggtgcta 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 230 ttatttttgtactgagaacaagtgaagactggggagttggctcagcaggtaaaggtgcta 171

                                                                       
Query: 305 gctgtgcaagcttagcaacctgggtggatcagcagtctgtgttgagcaggagagatggct 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 170 gctgtgcaagcttagcaacctgggtggatcagcagtctgtgttgagcaggagagatggct 111

                                                                       
Query: 365 cagtgatcaagagtgttggctgctcttgggcagggcctgggttcggtttccagcacccac 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 110 cagtgatcaagagtgttggctgctcttgggcagggcctgggttcggtttccagcacccac 51

                                                             
Query: 425 atggcagctcacttccatcagtaattccagtcccagggtattgagtgccc 474
           ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 50  atggcagctcacttccatcagtaattccagtcccagggtattgagtgccc 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 506
Length of database: 906
Length adjustment: 10
Effective length of query: 496
Effective length of database: 896
Effective search space:   444416
Effective search space used:   444416
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)