Query= MSMg01no540_p02.b1 MSMg01no540_p02.b1 CHROMAT_FILE:
MSMg01no540_p02.b1 PHD_FILE: MSMg01no540_p02.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:20:24 2005
(605 letters)
>mm_chr14_121535006_121536010
Length = 1005
Score = 1135 bits (587), Expect = 0.0
Identities = 599/603 (99%), Gaps = 4/603 (0%)
Strand = Plus / Plus
Query: 5 gaattccttattgtc-tgcctgtatcactcactcggagaggatttgatccctgagggtcc 63
||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattccttattg-catgcctgtatcactcactcggagaggatttgatccctgagggtcc 263
Query: 64 tgccctttgtcgtgtttgtggcttagccctatgacaggaacacgcatgtactattaaata 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 tgccctttgtcgtgtttgtggcttagccctatgacaggaacacgcatgtactattaaata 323
Query: 124 gcatttacttttataaaaagtgtctgagtctcatctacagttaatatgtggagtgtgtaa 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 gcatttacttttataaaaagtgtctgagtctcatctacagttaatatgtggagtgtgtaa 383
Query: 184 attcatatgtatttgagtcg-agagacgagaaggatgtctacgtttatcttacagaccgt 242
|||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||
Sbjct: 384 attcatatgtatttgagtcgca-agacgagaaggatgtctacgtttatcttacagaccgt 442
Query: 243 gctgagttttgttcttggtgcatgaacttggatggatggctgctaggaaactatccttac 302
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 443 gctgagttttgttcttggtgcatgaacttggatggatggctgctaggaaactatccttac 502
Query: 303 ttgcttttctctcgacgaggagatagaggctgacaggggagtgccctgctcacgaccacc 362
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 503 ttgcttttctctcgacgaggagatagaggctgacaggggagtgccctgctcacgaccacc 562
Query: 363 ttgctcaggattctgcaagtccagactaccacaccctcagtgtgactccattcggggagt 422
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 563 ttgctcaggattctgcaagtccagactaccacaccctcagtgtgactccattcggggagt 622
Query: 423 agggatggctttatctaagtcaatggaaaagtcagataactacagaaagatctgacacct 482
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 623 agggatggctttatctaagtcaatggaaaagtcagataactacagaaagatctgacacct 682
Query: 483 cacagtttcataaagcccgtggtagaccatggtgacttgtgatagtaaaatggtgaatgc 542
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 683 cacagtttcataaagcccgtggtagaccatggtgacttgtgatagtaaaatggtgaatgc 742
Query: 543 atgcatgatgttaatagtacatgcaacggcagagtaattacttatgaatctagactctag 602
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 743 atgcatgatgttaatagtacatgcaacggcagagtaattacttatgaatctagactctag 802
Query: 603 tga 605
|||
Sbjct: 803 tga 805
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 605
Length of database: 1005
Length adjustment: 10
Effective length of query: 595
Effective length of database: 995
Effective search space: 592025
Effective search space used: 592025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no540_p02.g1 MSMg01no540_p02.g1 CHROMAT_FILE:
MSMg01no540_p02.g1 PHD_FILE: MSMg01no540_p02.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:20:24 2005
(569 letters)
>mm_chr14_121650797_121651765
Length = 969
Score = 1023 bits (529), Expect = 0.0
Identities = 555/569 (97%), Gaps = 9/569 (1%)
Strand = Plus / Minus
Query: 1 caaggtgttagggaagagatcaactgctcactaaacctctggagatttccaatccctact 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 837 caaggtgttagggaagagatcaactgctcactaaacctctggagatttccaatccctact 778
Query: 61 tctaaaagttgccacgctttttctcaggcactcaggttagtagctcctcggcaatgtctt 120
|||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 777 tctaaaag---------tttttctcaggcactcaggttagtagctcctcggcaatgtctt 727
Query: 121 cctctcccactaatctgcatgaagaggtgggccagcaatcccccaccaacaatgctctaa 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 726 cctctcccactaatctgcatgaagaggtgggccagcaatcccccaccaacaatgctctaa 667
Query: 181 gggcacacacttctggcaaaggccttttcaaatcttcttaaatggacactttgtcattcc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 666 gggcacacacttctggcaaaggccttttcaaatcttcttaaatggacactttgtcattcc 607
Query: 241 acaaataattatgggacttcaaattggccctgctgtttttatggatttcaatctatcacc 300
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 606 acaaataattatgggatttcaaattggccctgctgtttttatggatttcaatctatcacc 547
Query: 301 tatcccagagcctgcctctacagctttatcattttcatttagaatacattcataattctc 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 546 tatcccagagcctgcctctacagctttatcattttcatttagaatacattcataattctc 487
Query: 361 tcctggcccataggaggctgagctcagaggctcaggacaggctcttcatcagaggagaca 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 486 tcctggcccataggaggctgagctcagaggctcaggacaggctcttcatcagaggagaca 427
Query: 421 aaacggcctgagggggagcgggcgcagcttcctgcctctcatgccctctgagggctggca 480
|||||||||||| |||||||||| |||||||||||||||||| |||||||||||||||||
Sbjct: 426 aaacggcctgagagggagcgggcacagcttcctgcctctcatcccctctgagggctggca 367
Query: 481 caagctccctgctgatgatctgcttcttcagcgtaggccaaagctgtgtaaacagactca 540
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 366 caagctccctgctaatgatctgcttcttcagcgtaggccaaagctgtgtaaacagactca 307
Query: 541 cccagttctgggaagagagagtgagaaaa 569
|||||||||||||||||||||||||||||
Sbjct: 306 cccagttctgggaagagagagtgagaaaa 278
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 569
Length of database: 969
Length adjustment: 10
Effective length of query: 559
Effective length of database: 959
Effective search space: 536081
Effective search space used: 536081
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
