Query= MSMg01no541_l14.b1 MSMg01no541_l14.b1 CHROMAT_FILE:
MSMg01no541_l14.b1 PHD_FILE: MSMg01no541_l14.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:21:29 2005
(611 letters)
>mm_chr14_110881857_110882867
Length = 1011
Score = 1106 bits (572), Expect = 0.0
Identities = 600/612 (98%), Gaps = 8/612 (1%)
Strand = Plus / Plus
Query: 4 ggaattcactattttcattatattattactatttttattaagtttagctcgttctcggct 63
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattcactattttcattatattattactatttttattaagtttagctcgttctcggct 263
Query: 64 gatcataacagaatgtcgtgaattgtgtgttgcaacaggggagaacctcactagaacttc 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 gatcataacagaatgtcgtgaattgtgtgttgcaacaggggagaacctcactagaacttc 323
Query: 124 atagatgtgagagccatgttcttgagcctctacaaccatatgccaaacagtcctcctctc 183
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 gtagatgtgagagccatgttcttgagcctctacaaccatatgccaaacagtcctcctctc 383
Query: 184 cttagggggtatctatctcccctgaggtgttttgcaatttaaatgaaaaacaaattcaca 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 cttagggggtatctatctcccctgaggtgttttgcaatttaaatgaaaaacaaattcaca 443
Query: 244 tactggggctaagattctcttcactatgatctcaacatttctgtgacaaataaaggtgct 303
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 444 tactggggctaagattctcttcactatgatctcaacatttctgtgacaaataaaggtact 503
Query: 304 gtcgcacagattagacccaatttgtaaaattgttctcaggctgataggctgtatatggtc 363
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 gtcgcacagattagacccaatttgtaaaattgttctcaggctgataggctgtatatggtc 563
Query: 364 tgaaggagtgcaagcttactggagtaaggcttttctaactctctttcctgactctaaaaa 423
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 564 tgaaggagtgcaagcttactggagtaaggcttttctaactctctttcctgactctacaaa 623
Query: 424 aacaaaaaacaaaaaacaaaaaaaaactaattgtcttagttaggttccccccc----ccc 479
|| |||||| |||||| ||||||||||||||||||||||||||||||||||| |||
Sbjct: 624 aa-aaaaaa-aaaaaa--aaaaaaaactaattgtcttagttaggttcccccccacccccc 679
Query: 480 gcccccaccaggtgctcttacccactgagccatctcaccagccctcttagttatggtttt 539
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 680 gcccccgccaggtgctcttacccactgagccatctcaccagccctcttagttatggtttt 739
Query: 540 actgctgtgagcagacaacatgaccaaggctagtctcataagggcaacatttaattggtg 599
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 740 actgctgtgagcagacaacatgaccaaggctagtctcataagggcaacatttaattggtg 799
Query: 600 ctggcttacagg 611
||||||||||||
Sbjct: 800 ctggcttacagg 811
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 611
Length of database: 1011
Length adjustment: 10
Effective length of query: 601
Effective length of database: 1001
Effective search space: 601601
Effective search space used: 601601
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no541_l14.g1 MSMg01no541_l14.g1 CHROMAT_FILE:
MSMg01no541_l14.g1 PHD_FILE: MSMg01no541_l14.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:21:29 2005
(588 letters)
>mm_chr14_110930736_110931725
Length = 990
Score = 1075 bits (556), Expect = 0.0
Identities = 581/590 (98%), Gaps = 2/590 (0%)
Strand = Plus / Minus
Query: 1 ttttcattatgtgttccatatatctatcaccaattctggacaccaatgaaatctcatagt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 790 ttttcattatgtgttccatatatctatcaccaattctggacaccaatgaaatctcatagt 731
Query: 61 agtactgtgctaaggacaagaaattattggtcagtctgaagttgaatatacattaattag 120
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 730 agtactgtgctaaggacaagaaattattggtcagtctgaagttgaatataccttaattag 671
Query: 121 gtctcacagttcagtgatgtctttgtaaagttaaaatccaaagggatgcatatgtcctaa 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 670 gtctcacagttcagtgatgtctttgtaaagttaaaatccaaagggatgcatatgtcctaa 611
Query: 181 gcatttgctgaggaaacctggttcatttcagagaaaaacagaaaaaggaacataaccaat 240
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 610 gcatttgctgaggaaacctggttcatttcagagaaacacagaaaaaggaacataaccaat 551
Query: 241 --aaaaaatcataacttccatttgacatatactaggttatttttaactgtgttgaattca 298
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 550 aaaaaaaatcataacttccatttgacatatactagtttatttttaactgtgttgaattca 491
Query: 299 aatgggatacattttgtaattttatgacttacacctaatggagagaagaaacctgtactt 358
|| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 490 aaagggataaattttgtaattttatgacttacacctaatggagagaagaaacctgtactt 431
Query: 359 ttagtgttagatgaagcttataaatgtagtcaacaacttaaaacttgtttgtacaagggg 418
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 430 ttagtgttagatgaagcttataaatgtagtcaacaacttaaaacttgtttgtacaagggg 371
Query: 419 ctggaaagctgtacttgcctagaatgtcagactcctgtcgtgttggcacaagttactatt 478
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 370 ctggaaagctgtacttgcctagaatgtcagactcctgtcgtgttggcacaagtcactatt 311
Query: 479 ttacttagggtaggctattgctgagccagaagggtaattgttcttttttgattatatctt 538
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 310 ttacttagggtaggctattgctgagccagaagagtaattgttcttttttgattatatctt 251
Query: 539 gaacgttatacaataaaagtttttgttttgttttttcatatttgaaacag 588
||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 250 gaacgttatacaataaaagtttttgttttgttttttcatatttgaaacag 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 588
Length of database: 990
Length adjustment: 10
Effective length of query: 578
Effective length of database: 980
Effective search space: 566440
Effective search space used: 566440
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
