Query= MSMg01no541_m08.b1 MSMg01no541_m08.b1 CHROMAT_FILE:
MSMg01no541_m08.b1 PHD_FILE: MSMg01no541_m08.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:21:33 2005
(670 letters)
>mm_chr14_58255931_58257000
Length = 1070
Score = 1243 bits (643), Expect = 0.0
Identities = 661/667 (99%)
Strand = Plus / Minus
Query: 4 ggaattcacagagatctgcctgacttgtgagttctgggattaaagacatataccgccatc 63
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 800 ggaattcacagagatctgcctgacttgtgagttctgggattaaagacatataccgccatc 741
Query: 64 cttatttttttcatatttttaatcattcttttgaacatttgtccacccagttttaataag 123
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 740 cttgtttttttcatatttttaatcattcttttgaacatttgtccacccagttttaataag 681
Query: 124 ccttggaaagtaccaataattatagaagtggttgagttaaacataaatgttatctggcat 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 680 ccttggaaagtaccaataattatagaagtggttgagttaaacataaatgttatctggcat 621
Query: 184 aataagagtcattaactacaccttgacttccaggtgtttctgtctggtgagcagatgcca 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 620 aataagagtcattaactacaccttgacttccaggtgtttctgtctggtgagcagatgcca 561
Query: 244 ggccattgaccacattactgaaaggaacatagcttctctgccctgtccacatttattgtg 303
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 ggccattgaccacattactgaaaggaacatagcttctctgccctgtccacatttattgtg 501
Query: 304 tgtctagttgtagaaatttcttaccagaggctgtgttactgaccagctctgattcctggg 363
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 tgtctagttgtagaaatttcttaccagaggctgtgttactgaccagctctgattcctggg 441
Query: 364 gtgatccctgtagagctggagttagtagtacctggctattctgattcttaggtatcaaat 423
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 gtgatccctgtagagctggagttagtagtacctggctattctgattcttaggtatcaaat 381
Query: 424 cttaaaatagtctcagtaggtttttagctgtcacaattaatattttaaaattgcttgagc 483
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 cttaaaatagtctcagtaggtttttagctgtcacaattaatattttaaaattgcttgagc 321
Query: 484 gattgatgtatgaggctatataattttcagggacccttctgtaagaggtatagcacttat 543
||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 320 gattgatgtgtgaggctatataattttcagggacccttctgtaagaggtataacacttat 261
Query: 544 ttattagtcgtggtgggccttgaacccagacccttgcagaggcaaggcaagtgctgtgct 603
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 260 ttattagtcgtggtgggccttgaacccagacccttgcagaggcaaggcgagtgctgtgct 201
Query: 604 actgagcactgaagctgtttctgttttaatgtggagctgtgctagtgttcgaatagtttt 663
|||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||
Sbjct: 200 actgagcactgaagctgtttctgttttagtgtggagctgtgctagtgttcgaatggtttt 141
Query: 664 acagtga 670
|||||||
Sbjct: 140 acagtga 134
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 670
Length of database: 1070
Length adjustment: 10
Effective length of query: 660
Effective length of database: 1060
Effective search space: 699600
Effective search space used: 699600
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no541_m08.g1 MSMg01no541_m08.g1 CHROMAT_FILE:
MSMg01no541_m08.g1 PHD_FILE: MSMg01no541_m08.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:21:33 2005
(594 letters)
>mm_chr14_58103849_58104842
Length = 994
Score = 1096 bits (567), Expect = 0.0
Identities = 591/607 (97%), Gaps = 13/607 (2%)
Strand = Plus / Plus
Query: 1 ctattttcaatatgtgcttgcttatgtcataataaaatagtgtggtactaaagggggctg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ctattttcaatatgtgcttgcttatgtcataataaaatagtgtggtactaaagggggctg 260
Query: 61 gaaagacagatgaaagaacccaaaattagctctctcatacatgggaaggtgatgtctttt 120
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 261 gaaagacagatgaaagaacccaaaattagctctctcatacacgggaaggtgatgtctttt 320
Query: 121 tttaaattatttgtttattttatgtatataagtatactgtactgtcttcagacacaccag 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tttaaattatttgtttattttatgtatataagtatactgtactgtcttcagacacaccag 380
Query: 181 aagagaacatcagatcccactgaggtgagccaccatgtggttgctgggaattgaactcag 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aagagaacatcagatcccactgaggtgagccaccatgtggttgctgggaattgaactcag 440
Query: 241 gacctctggaagagcagtcagtgctcttaaccactgagccatctctccagccccggaagg 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gacctctggaagagcagtcagtgctcttaaccactgagccatctctccagccccggaagg 500
Query: 301 tgatgtcctacaaaggcatcgtaccatgcaatgcagaaaggacagccttttcaactaaaa 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tgatgtcctacaaaggcatcgtaccatgcaatgcagaaaggacagccttttcaactaaaa 560
Query: 361 acaaactagatatttacatggcagaaaaagtaaagtttgaaaccaactggtggtatacac 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 acaaactagatatttacatggcagaaaaagtaaagtttgaaaccaactggtggtatacac 620
Query: 421 caatgatctcagtactctggggctgaggcaggattgagagttcaaggctaggctgggcta 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 caatgatctcagtactctggggctgaggcaggattgagagttcaaggctaggctgggcta 680
Query: 481 caaattagtccttcatcttaaaaacaacaaccaccaaaaaaaaaaaaaaaaagaaaaaaa 540
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 caaattagtccttcatctcaaaaacaacaaccaccaaaaaaaaaaaaaaaaagaaaaaaa 740
Query: 541 a-------------tgaacctttagcttatcccataagcaaaaatgaacttaaagtggat 587
| ||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 741 aaaaagaaaaaaaatgaacctttagcttatcccataaacaaaaatgaacttaaagtggat 800
Query: 588 taaaggc 594
|||||||
Sbjct: 801 taaaggc 807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 38
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 594
Length of database: 994
Length adjustment: 10
Effective length of query: 584
Effective length of database: 984
Effective search space: 574656
Effective search space used: 574656
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
