Query= MSMg01no541_o24.b1 MSMg01no541_o24.b1 CHROMAT_FILE:
MSMg01no541_o24.b1 PHD_FILE: MSMg01no541_o24.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:21:47 2005
(564 letters)
>mm_chr14_114287531_114288493
Length = 963
Score = 1052 bits (544), Expect = 0.0
Identities = 556/560 (99%), Gaps = 1/560 (0%)
Strand = Plus / Minus
Query: 5 gaattcctaaatcaattgtcatgtatttttgttttaccattataaataatttataaaata 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 797 gaattcctaaatcaattgtcatgtatttttgttttaccattataaataatttataaaata 738
Query: 65 aaaatttactgtacatagtgtttttacattttatatgtggtaaatatatttttagaagta 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 737 aaaatttactgtacatagtgtttttacattttatatgtggtaaatatatttttagaagta 678
Query: 125 ctttattatctttaaatttaagtaaacagattttaaaaacaacttaatataattatgatt 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 677 ctttattatctttaaatttaagtaaacagattttaaaaacaacttaatataattatgatt 618
Query: 185 atttgtttccttagctgaatatatacaatttcttgtcaaagaaagaaatattcctttttc 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 617 atttgtttccttagctgaatatatacaatttcttgtcaaagaaagaaatattcctttttc 558
Query: 245 cataagcatacaatttctcaataatttattactatcattctcttacttgaggagaaaaag 304
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 557 cataagcatacaatttctcaataatttataactatcattctcttacttgaggagaaaaag 498
Query: 305 gtggcagatatggctgctattaagttttctaatataggggtgtacctggaaggcatgaag 364
|||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||
Sbjct: 497 gtggcagatatggctgctattaagttttctaa-ataggggtgtacctggaagacatgaag 439
Query: 365 accagtgtgtttacctaatttctttatacaacgtcgaatagccaatctcctaggaataag 424
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 438 accagtgtgtttacctaatttctttatacaatgtcgaatagccaatctcctaggaataag 379
Query: 425 caaaggtttttttctgataaggaaattgtactatgaatccctttgggcatgatgtgctta 484
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 378 caaaggtttttttctgataaggaaattgtactatgaatccctttgggcatgatgtgctta 319
Query: 485 gctcagcattgcttttgtaaaatgaactctgaaagtatgaatggtttggtggtttgaatg 544
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 318 gctcagcattgcttttgtaaaatgaactctgaaagtatgaatggtttggtggtttgaatg 259
Query: 545 tgctcagcccaggcagtggc 564
||||||||||||||||||||
Sbjct: 258 tgctcagcccaggcagtggc 239
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 564
Length of database: 963
Length adjustment: 10
Effective length of query: 554
Effective length of database: 953
Effective search space: 527962
Effective search space used: 527962
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no541_o24.g1 MSMg01no541_o24.g1 CHROMAT_FILE:
MSMg01no541_o24.g1 PHD_FILE: MSMg01no541_o24.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:21:47 2005
(609 letters)
>mm_chr14_114107247_114108256
Length = 1010
Score = 808 bits (418), Expect = 0.0
Identities = 588/710 (82%), Gaps = 104/710 (14%)
Strand = Plus / Plus
Query: 1 atccctgaaagcaacttattctccactgttatagtccactgaccacctgttattcttcac 60
||||||||||||||||||||||||||||||||| ||||||| |||||| |||||||||||
Sbjct: 201 atccctgaaagcaacttattctccactgttataatccactgtccacctattattcttcac 260
Query: 61 ttagggatgggaccatgtccacactgggat-actggctggtatcactatgctggtcttgg 119
||||||||||| |||||||||||||||||| | |||||||||||||||| ||||||||||
Sbjct: 261 ttagggatggggccatgtccacactgggataattggctggtatcactattctggtcttgg 320
Query: 120 tcaggcaacaatatgcctaatagatcacaattgctttccttaacatgcctagacaggagg 179
|||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tcaggcaaaaatattcctaatagatcacaattgctttccttaacatgcctagacaggagg 380
Query: 180 caaggagcagtggctctagtaattactctgactacttttctgtgatgttacctgagtctg 239
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 381 caaggagcagtggctctagtaattactctgactacttttctgtgatgttacctgagtccg 440
Query: 240 ggtcttagagtttgtgttgaataggtatcagttgtttttggccactccagatgtgcaaag 299
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ggtcttagagtttgtgttgaataggtatcagttgtttttggccactccagatgtgcaaag 500
Query: 300 tctctggttttagaccagttgtataactgtaatagtctccatctgttgcactaagaggct 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tctctggttttagaccagttgtataactgtaatagtctccatctgttgcactaagaggct 560
Query: 360 tacttgcaaaggtgtgtgagatatattcatgtgtggttataggaatgggta--cttaact 417
| ||||||||||||||||||||||||||||||||||||||||||| || |||||||
Sbjct: 561 catttgcaaaggtgtgtgagatatattcatgtgtggttataggaat---tatacttaact 617
Query: 418 aacagaaagtttataggattag---taac------------------------------- 443
|||||||||||||||||||||| |||
Sbjct: 618 aacagaaagtttataggattaggactaataataataataataatattattatatatataa 677
Query: 444 -------------------------------ct--------------------------- 445
||
Sbjct: 678 tatatataataatataatatataatataggactattattattattattattattatatat 737
Query: 446 ------gactattgtagattcttttctctggccttttgttgttctagccccagatatccc 499
|||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 738 tattaggactattgtagattcttttctctggccttttgttgtcctagccccagatatcca 797
Query: 500 gggttacagtattggacatcaatttgctcctgctgtacacgccttaggtctaattagaca 559
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 798 gggttacagtattggacatcaatttgctcctgctgtacacgccttaggtctaattagata 857
Query: 560 gccgttctttactctcattctaaaattacaactattgcaatgttatggac 609
||| ||||||||||| ||||||||||||||||||||||||| ||||||||
Sbjct: 858 gccattctttactctaattctaaaattacaactattgcaatattatggac 907
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 609
Length of database: 1010
Length adjustment: 10
Effective length of query: 599
Effective length of database: 1000
Effective search space: 599000
Effective search space used: 599000
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
