BAC Information

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BAC

Clone NameMSMg01-542D09
Chromosome14 (Build37)
Map Location 33,017,668 - 33,018,037
singlet/doubletsinglet
Overlap geneParg
Upstream geneNisch, Tnnc1, Sema3g, Phf7, Bap1, Dnahc1, Capn7, Sh3bp5, Mettl6, Eaf1, Colq, Hacl1, Btd, Ankrd28, Galntl2, Dph3, Oxnad1, Msmb, Ncoa4, Timm23
Downstream geneLOC665601, Ogdhl, 1700024G13Rik, Chat, Slc18a3, LOC100040834, EG665618, Ercc6, 9430077A04Rik, Prrxl1, 3425401B19Rik, 1810011H11Rik, 4922501K12Rik, E130203B14Rik, EG665658, Lrrc18
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-542D09.T7 (MSMg01no542_d09.b1)MSMg01-542D09.TJ (MSMg01no542_d09.g1)
ACCAG608042AG608043
length757768
length of high quality
(start - end)		374 (46 - 419)539 (73 - 611)
definitionCHROMAT_FILE: MSMg01no542_d09.b1 PHD_FILE: MSMg01no542_d09.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:22:10 2005CHROMAT_FILE: MSMg01no542_d09.g1 PHD_FILE: MSMg01no542_d09.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:22:10 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCTTTCTGGAATTTCGTATTTAAGTTTTTTACATATAGGTATCCTAG
AAGTGGGTGGAGTAGAGAAAGCCTATTCAGTATCTTTTTATGGATATATC
TCATACATTGATTGACATCTCTGCTTAGGCAGAACTCAGCATACTTTTCA
CATTTCTGGTGGCAAATGACTTAACCAGTTGGGTTGCTATAGGAGACTTT
CTGGAAGTGAGGTGCTCCTTGAAAATGCAGGTGGATTTTACTGTATTTTA
TGTCCTTTGTGTCAATTTTTAACTATATGGATCACCTCATTGTACCACAG
TGGATGGAAATAAGTGTGAATGATGTGCACGGAGAGTAAATCAGAATCAT
CAGAATCAGGTCAGTTATAAAAGAGATTGGATTTAAGTGTTAGGAAAGAA
TGTATTTATTGGATAATTCCTTTTGTAGCCTGGATACAATGTTTTCTATT
ATTTTTGGATTTTTTTTTGAAGATTTATTTATTTATTTTAGGTGAGTACA
CTGTTGCTTTCTTCCAAACCCCCACCAAAAGAAGGGCTTCCAAATTCCAT
TTCCCAAATAGTTGGGAACCCCCCCATGTGGGTTGCTTGGGAATTGAAAC
CCCGGGACCCCCTCAAAAAAAAAAATCCAGGGGTCTTTAAAACCCGGGAA
CCCTTTTTCCCCCACCCCCCTAATTTTTTGGAATTCCTCACAAAAAAACA
ATGGTCC

AATGCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXCAGGAAGAAACAGAGAGAGAACAGGGAA
AGGAACCATGAGAAACATAGGGTATCCTGTTAGTGTGTGTGGTTTGAGTG
AGGATGGCCCCATAGGCTCATATGTTTAAATGCTTAGTCCCCAGTTGGTT
GGTGACTGTTTAGGAAGGTTTAACAGGTGTGGCCTTCTTGGAGGGGGTGC
GTCACTGAAGTGTGCTTTAGGTTGCAAAAGTCCATGTTATAGCAGTTGAC
TCCCTCTTTGCCTCTGTCTTAGTTAGAGTTTCACTGCTGTGAATAGACAC
CATGACCAAGGCAACTTTTATAAGGACAACATTTAATTGGGGCCGACTTA
CAGGTTTGGAGGTTCAGTCCATTGTCATCAAGGCAGGAACATGGCAGAAT
CCAGACAGGTATGGTCCAGGAGGACCTGAGGGTTCTACATCTTTATCTGA
AGGTTGCTAGCAGAATACTGGCTTCCAGGCAGCTAAGATGAGGGTCTCTC
CTCTCCTCTCCTCTCCTCTCCTCTCCTCTCCTCTCCTCTCCTCTCCTCTC
CTCTCCTCTCCTCTCCTTTTCTTTTTCNCTTTTTTCTCTTTTTTCTTCTC
TTCTCTGCTTCTTTTTTTCTTTTCTTTTTTTCTTTCTTTTCTCCTTCCTT
TTCTCTTTTTCTCTTTTTTCTTTCTTTTTCTTTTTTCCCCTTCCTTTTTT
TTGTTGGTTGTTTTTTGT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no542_d09.b1 MSMg01no542_d09.b1 CHROMAT_FILE:
MSMg01no542_d09.b1 PHD_FILE: MSMg01no542_d09.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:22:10 2005
         (374 letters)



>mm_chr14_33017464_33018237
          Length = 774

 Score =  677 bits (350), Expect = 0.0
 Identities = 365/370 (98%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattctttctggaatttcgtatttaagttttttacatataggtatcctagaagtgggtg 64
           ||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattctttctggaacttggtatttaagttttttacatataggtatcctagaagtgggtg 264

                                                                       
Query: 65  gagtagagaaagcctattcagtatctttttatggatatatctcatacattgattgacatc 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 gagtagagaaagcctattcagtatctttttatggatatatctcatacattgattgacatc 324

                                                                       
Query: 125 tctgcttaggcagaactcagcatacttttcacatttctggtggcaaatgacttaaccagt 184
           ||||||||||||||||||||||| ||||||| || |||||||||||||||||||||||||
Sbjct: 325 tctgcttaggcagaactcagcatgcttttcatatctctggtggcaaatgacttaaccagt 384

                                                                       
Query: 185 tgggttgctataggagactttctggaagtgaggtgctccttgaaaatgcaggtggatttt 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 tgggttgctataggagactttctggaagtgaggtgctccttgaaaatgcaggtggatttt 444

                                                                       
Query: 245 actgtattttatgtcctttgtgtcaatttttaactatatggatcacctcattgtaccaca 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 actgtattttatgtcctttgtgtcaatttttaactatatggatcacctcattgtaccaca 504

                                                                       
Query: 305 gtggatggaaataagtgtgaatgatgtgcacggagagtaaatcagaatcatcagaatcag 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 gtggatggaaataagtgtgaatgatgtgcacggagagtaaatcagaatcatcagaatcag 564

                     
Query: 365 gtcagttata 374
           ||||||||||
Sbjct: 565 gtcagttata 574


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 374
Length of database: 774
Length adjustment: 9
Effective length of query: 365
Effective length of database: 765
Effective search space:   279225
Effective search space used:   279225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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