BAC Information

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BAC

Clone NameMSMg01-542M21
Chromosome14 (Build37)
Map Location 117,285,866 - 117,286,466
singlet/doubletsinglet
Overlap genenone
Upstream geneGpc5
Downstream geneGpc6
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-542M21.T7 (MSMg01no542_m21.b1)MSMg01-542M21.TJ (MSMg01no542_m21.g1)
ACCAG608491AG608492
length764762
length of high quality
(start - end)
202 (51 - 252)599 (77 - 675)
definitionCHROMAT_FILE: MSMg01no542_m21.b1 PHD_FILE: MSMg01no542_m21.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:22:57 2005CHROMAT_FILE: MSMg01no542_m21.g1 PHD_FILE: MSMg01no542_m21.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:22:57 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
GGGGAATTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
CGCGGAATTCTTCCCCACTGTGCAGTCGCCATCCAGAAGCAGGGCAGGAG
GTCACAGGGAGTTCTGTGGTTAAAGGGGAGTGAGCAAACATAGGAAGTCT
CTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTGT
GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTAGTAGTGTGTGTGT
GAACAGTANTTCACAGGAGATATTAGACAGCATATAAAAGTCTATGTCAC
AGATACAGTTCCTCAGTGATGCACATGAAAGGTTCTCTGCTTACATAACA
TGATCCCATGAATCTGCTTGCCTTTAATGATGAACACCCTGACACAGCTC
GATTTACTATGTTTTCAACTGTACCCTGATGAAACTTTTGTTTTTCAATG
GGATCAAAGATCCCAGGAATTACAGAGGGAGGACAATATTTATGGACATA
TACAAATGGAAAGGCCTGAGATGAACAGTGAAACAGAGGATGTTGAAATG
GAATCACTTCTGTTGTTCTTTGTTACTGGTGCGAGAGTTCAAGAACAAAC
GGAATTAGGTGACGAGAGCGAGCTATTTTTGTCCCGATTTATTAAAATTT
AGAAAATTTTATGCAAGATTTATCACTTGTGAGCTATTTTATTTACATAC
TTTTGCACATGGGCATTTGTGGACATGTGGGGAAGGATGGGCTCTGTTTG
ACCGGTTTGAAAGG
NNNNCCGATGATATGNGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTTATATGGGTCCATGTGTGCAAGG
GCAGTATGCTCTCCCAGCTGCTGGAGTGCCTTTGCCTCACAAACCATGGA
CATTTTTGTTCTTCATTGTGAAAAAAATACATCCAATAAAGGATTCAGAT
TTTTTTTTTATGTTTTAGATTCTTTTTTTTAATTAGGTATTTTCTTCATT
TACATTTCCAATGCTATCCCAAAAGTCCCCCATGCCCTCCCCTCCCCCAC
TTCCCTACCCACCCACTCCCACATCTTGACCCTGGCTTTCCCCTATACCG
AGGCATATAAAGTTTGTACTACCAATGGGCCTCTCTTTCCACTGATGGCC
GACTAGGCCATCTTCTGATACATATGCAGCTAGAGACACAAGCTCTGGGA
GGTACTGGTTAGTTCATAGTGTTGTTCCACCTATAGGATTGCAGATGATC
CCTTTAGCTCCTTGGGTACTTTCTCTAGCTCCTCCACTGGGGGCCCTGTG
ATCCATCCAATAGATGACTGTGAGCATCCACTTCTGTGTTTGCTAGGCCC
TGGCACAAGAGACAGCTATATTTGGGTCCTTTCAGCAAAATCTTGCTAGT
GTATGCAATGGTGTCAGCATTTGGAAGCTGATTATGGGATGGATCCCCAT
GTATGGCAGTCTCTAGATGGTCCATCCTTTTGTCTCAGCTCCAAACTTTG
TCTCTGTAACTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no542_m21.g1 MSMg01no542_m21.g1 CHROMAT_FILE:
MSMg01no542_m21.g1 PHD_FILE: MSMg01no542_m21.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:22:57 2005
         (599 letters)



>mm_chr14_117285666_117286663
          Length = 998

 Score =  932 bits (482), Expect = 0.0
 Identities = 572/608 (94%), Gaps = 16/608 (2%)
 Strand = Plus / Plus

                                                                       
Query: 1   ttatatgggtccatgtgtgcaagggcagtatgctctcccagctgctggagtgcctttgcc 60
           ||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||
Sbjct: 201 ttatatgggtccatgtgtgcaagggcagtatgctcacccagctgctggagtgtctttgcc 260

                                                                       
Query: 61  tcacaaaccatggacatttttgtt-cttcattgtgaaaaaaatacatccaataaaggatt 119
           |||||| ||||||||||||||||| ||| |||||||||||||| ||||| ||||||||||
Sbjct: 261 tcacaagccatggacatttttgttcctt-attgtgaaaaaaatgcatcccataaaggatt 319

                                                                       
Query: 120 cagattttttttttatgttttagattcttttttttaattaggtattttcttcatttacat 179
           |||| |||||||| ||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 320 caga-ttttttttcatgttttagattc-tttttttaattaggtattttcttcatttacat 377

                                                                       
Query: 180 ttccaatgctatcccaaaagtcccccatgccctcccctcccccacttccctacccaccca 239
           ||||||||||||||||||||||||||||||   |||| ||||||||||||||||||||||
Sbjct: 378 ttccaatgctatcccaaaagtcccccatgc---cccc-cccccacttccctacccaccca 433

                                                                       
Query: 240 ctcccacatcttgaccctggctttcccctataccgaggcatataaagtttgtactaccaa 299
           |||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||
Sbjct: 434 ctcccacatcttgaccctggctctcccctatactgaggcatataaagtttgtactaccaa 493

                                                                       
Query: 300 tgggcctctctttccactgatggccgactaggccatcttctgatacatatgcagctagag 359
           |||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||
Sbjct: 494 tgggcctctctttccactgatggctgactacgccatcttctgatacatatgcagctagag 553

                                                                       
Query: 360 acacaagctctgggaggtactggttagttcatagtgttgttccacctataggattgcaga 419
           |||||||||| |||||||||||||||||| ||| ||||||||||||||||||||||||||
Sbjct: 554 acacaagctccgggaggtactggttagtttatattgttgttccacctataggattgcaga 613

                                                                       
Query: 420 tgatccctttagctccttgggtactttctctagctcctccactgggggccctgtgatcca 479
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 614 tgatccctttagctccttgggtactttctctagctcctccactgggggccctgtgatcca 673

                                                                       
Query: 480 tccaatagatgactgtgagcatccacttctgtgtttgctaggccctggca--------ca 531
           |||||||| |||||||||||||||||||||||||||||||||||| ||||        ||
Sbjct: 674 tccaatagctgactgtgagcatccacttctgtgtttgctaggccccggcatagtctcaca 733

                                                                       
Query: 532 agagacagctatatttgggtcctttcagcaaaatcttgctagtgtatgcaatggtgtcag 591
           ||||| |||||||  |||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 734 agagagagctataactgggtcctttcagcgaaatcttgctagtgtatgcaatggtgtcag 793

                   
Query: 592 catttgga 599
           | ||||||
Sbjct: 794 cgtttgga 801


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 599
Length of database: 998
Length adjustment: 10
Effective length of query: 589
Effective length of database: 988
Effective search space:   581932
Effective search space used:   581932
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)