BAC Information

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BAC

Clone NameMSMg01-543G07
Chromosome14 (Build37)
Map Location 94,142,798 - 94,143,183
singlet/doubletsinglet
Overlap genePcdh9
Upstream geneLOC668566
Downstream geneLOC100043356
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-543G07.T7 (MSMg01no543_g07.b1)MSMg01-543G07.TJ (MSMg01no543_g07.g1)
ACCAG608939AG608940
length785750
length of high quality
(start - end)
71 (110 - 180)437 (80 - 516)
definitionCHROMAT_FILE: MSMg01no543_g07.b1 PHD_FILE: MSMg01no543_g07.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:23:45 2005CHROMAT_FILE: MSMg01no543_g07.g1 PHD_FILE: MSMg01no543_g07.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:23:45 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TTGCCTTCCAAXXXXXXXXXXXXXXXXXXXXXCTTTTCCCGAGAGGTCCG
TGGAATTCCTACTTTATGTTGAAAGATATTCCTGAAATTATTCCCAAAAT
AAAATAAAGAACATTGACATTTCATTTACAAGGCCACACTCAAGTGGATG
TTGGCAAATCATGCTGAAGAAGTGGAGGAAGGATCCATGATCAGGACCAA
GAGGTGTCCAGGACACCTCCACATGAAAATCCACAGAACACATTAAAACG
AGCTCACTGGACCAAAGACTTGACTCGATACCTATGTTCCTTCTTACACT
GGTCTAGCCTCCTTCTATATCCCACTCGATTATCTTAATCTGTTTCATTT
CCACGAAGTACTCCTGGTTTCTTTCCATTTCCTGGTACTTATTAATAACG
CTGTTATGACCCTATTGGTAATTCGTGTCTTTATTACATGTCGTAGTTTC
CTTTGGTGATTTTCCAACGAGTAGCCATACCTGGTCTCTTTTGCTCATCT
ATGTCCAACTTTTCTGATTAACCATCATACTCCTTTTCCACGATCGCTTT
GTACCATTCTAGTCCATTCCTCCCACCTATGGTATGATTGCTTCCTATCT
TCCTCCCCATCACTTTCTTCCGCATCAAGTTGATAACCCTGACCTTTTTT
ATCTCAAACTCATTCTTTACTTTCCCCTTACGTTATTTTTTATCACTATT
CTGTTTTTCGCACTATTACTCTTGCCTTTGAATGTACTTATCTGACGCCC
TGACATTTCTTACTTTCTATTCTTTCCTTCCCCCC
CCCCCATTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXTGTGGACTGTATCTTGTGTAT
TCTATATGGTTTCTGTTTTTGATTTTTTTTTTTTTTGGCTGATACTCACT
TATTAGTGAGTACATACCATGCATGTTCTTTTCAGTTTGAGTTACCTCAC
TCAGGATATTTTCTAGTTCCATCCACTTGCCTGCAAAAGTCAGGATGTCC
TCATTCTTAACAGCTGAGTAGTATTCCACTGTGGAAATGAACCACATTTT
CTGTATCCATTCTTCTGTCATGGGATTTCTAAAAATATATCAAACCAGGT
GCCTGAGCATGAAGCTAATATCATCAAATAATTATATCTAGTAGTTTTAC
TGGCATTAGGAAATTATATTCGTCTAGGTTTTTCTACTCTGGCTAACAAT
TAAAGACAGGCAAGGGTATTTGAATATTTTCTTAAATATAATAAAATCTG
TGAAAAAAATTAACTTGCTAAGGATATTAGCAGGAATGAATATGTAAATT
GAATTGCTCAAAATATTGCTTGAATTAGCAGATTAAAAACTATATATGCC
AAACTCCCTCATACTTTAGGAGATTGAGAAGAAAATTTAGACTATTTCTC
CAGGAGCACAGATTTTTAATCTTCTGGATATAACAGCAAGACATCTACAT
TTAAATATCACTCTCACAAGTTATAATCTGAGGTACCCATATTTGGATAN

quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no543_g07.g1 MSMg01no543_g07.g1 CHROMAT_FILE:
MSMg01no543_g07.g1 PHD_FILE: MSMg01no543_g07.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:23:45 2005
         (437 letters)



>mm_chr14_94142347_94143183
          Length = 837

 Score =  746 bits (386), Expect = 0.0
 Identities = 386/386 (100%)
 Strand = Plus / Minus

                                                                       
Query: 52  ttttttggctgatactcacttattagtgagtacataccatgcatgttcttttcagtttga 111
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 837 ttttttggctgatactcacttattagtgagtacataccatgcatgttcttttcagtttga 778

                                                                       
Query: 112 gttacctcactcaggatattttctagttccatccacttgcctgcaaaagtcaggatgtcc 171
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 777 gttacctcactcaggatattttctagttccatccacttgcctgcaaaagtcaggatgtcc 718

                                                                       
Query: 172 tcattcttaacagctgagtagtattccactgtggaaatgaaccacattttctgtatccat 231
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 717 tcattcttaacagctgagtagtattccactgtggaaatgaaccacattttctgtatccat 658

                                                                       
Query: 232 tcttctgtcatgggatttctaaaaatatatcaaaccaggtgcctgagcatgaagctaata 291
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 657 tcttctgtcatgggatttctaaaaatatatcaaaccaggtgcctgagcatgaagctaata 598

                                                                       
Query: 292 tcatcaaataattatatctagtagttttactggcattaggaaattatattcgtctaggtt 351
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 597 tcatcaaataattatatctagtagttttactggcattaggaaattatattcgtctaggtt 538

                                                                       
Query: 352 tttctactctggctaacaattaaagacaggcaagggtatttgaatattttcttaaatata 411
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 537 tttctactctggctaacaattaaagacaggcaagggtatttgaatattttcttaaatata 478

                                     
Query: 412 ataaaatctgtgaaaaaaattaactt 437
           ||||||||||||||||||||||||||
Sbjct: 477 ataaaatctgtgaaaaaaattaactt 452


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 437
Length of database: 837
Length adjustment: 9
Effective length of query: 428
Effective length of database: 828
Effective search space:   354384
Effective search space used:   354384
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)