Query= MSMg01no544_j03.b1 MSMg01no544_j03.b1 CHROMAT_FILE:
MSMg01no544_j03.b1 PHD_FILE: MSMg01no544_j03.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:25:16 2005
(627 letters)
>mm_chr14_18131778_18132804
Length = 1027
Score = 1116 bits (577), Expect = 0.0
Identities = 615/628 (97%), Gaps = 2/628 (0%)
Strand = Plus / Plus
Query: 1 atgaagcatgtttatgtgatagtcttccaattttatggtgggagtttatcaccataaggt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 atgaagcatgtttatgtgatagtcttccaattttatggtgggagtttatcaccataaggt 260
Query: 61 gcatttcatgacagtcgaataactacattcagttaggcttgtcaccatgtgccttcccta 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gcatttcatgacagtcgaataactacattcagttaggcttgtcaccatgtgccttcccta 320
Query: 121 tcaagacacatgctgattgtatcaaatactgttgactgtcttagtgctgcaaatagaaaa 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tcaagacacatgctgattgtatcaaatactgttgactgtcttagtgctgcaaatagaaaa 380
Query: 181 gatgattacattgttctgtgcagatatgatgcaatgttattcacgtggcaagaaactgaa 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 381 gatgattacattgttctgtgcagatatgatgcaatgttattcacgtggcaagaaattgaa 440
Query: 241 gatcagagtgacctaccagtattagaaagattggttattgagagattcttaatgtaaaga 300
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gatcagagttacctaccagtattagaaagattggttattgagagattcttaatgtaaaga 500
Query: 301 tgattcactaatgggcagatggcaggtggactttaatgtgtgggtgatcctttatgtaag 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tgattcactaatgggcagatggcaggtggactttaatgtgtgggtgatcctttatgtaag 560
Query: 361 caggtagatagaggtacagaacactgacttgctggaatttgtgggggatgctttgaatta 420
||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||
Sbjct: 561 caggtagatagaggtacagaacattgacttgctgtaatttgtgggggatgctttgaatta 620
Query: 421 ttaatttaccctttaaaagtaaatcgaagcaagaact-tcattgtcccctataaaacaaa 479
||||||||||||||||||||||||||||||||||| | ||||||||||||||||| ||||
Sbjct: 621 ttaatttaccctttaaaagtaaatcgaagcaagaa-tgtcattgtcccctataaagcaaa 679
Query: 480 catattaacttacctcaaagaactagactgcaggacaatgaatgtaagatgatttcttca 539
||||||| |||||| ||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 680 catattatcttaccccaaagaactagactgcaggacaatggatgtaagatgatttcttca 739
Query: 540 tcttgcccagaaaacatctgtcanggtgcttgtgagtgatgagattacctcccattttga 599
|||||| |||||| ||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 740 tcttgcacagaaagcatctgtcagggtgcttgtgagtgatgagattacctcccattttga 799
Query: 600 tatttaccatgcatgggttcccacacag 627
||||||||||||||||||||||||||||
Sbjct: 800 tatttaccatgcatgggttcccacacag 827
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 627
Length of database: 1027
Length adjustment: 10
Effective length of query: 617
Effective length of database: 1017
Effective search space: 627489
Effective search space used: 627489
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no544_j03.g1 MSMg01no544_j03.g1 CHROMAT_FILE:
MSMg01no544_j03.g1 PHD_FILE: MSMg01no544_j03.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:25:17 2005
(627 letters)
>mm_chr14_18304564_18305590
Length = 1027
Score = 1174 bits (607), Expect = 0.0
Identities = 610/611 (99%)
Strand = Plus / Minus
Query: 17 cagagacatccctgcagccaagatacagggttaactcagcctgcaccaaggagcccaata 76
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 827 cagagacatccctgcagccaagatacagggttaactcagcctgcaccaaggagcccaata 768
Query: 77 cggagagctaaaggaatctgattttaaggaggtctttttaagaaatggaggtctcgggac 136
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 767 cggagagctaaaggaatctgattttaaggaggtctttttaagaaatggaggtctcgggac 708
Query: 137 ctggcactggatttagtgatatttcctgggctcaagacaaagcataggccacagaagaaa 196
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 707 ctggcactggatttagtgatatttcctgggctcaagacaaagcataggccacagaagaaa 648
Query: 197 aattgagcataagtctttgatttcacaaagatgtaaaatcgttggatgcatttttgccac 256
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 647 aattgagcataagtctttgatttcacaaagatgtaaaatcgttggatgcatttttgccac 588
Query: 257 taggaaggatttgtacttagcagatttctcgatgctccctacctattctgtccttggaat 316
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 587 taggaaggatttgtacttagcagatttctcgatgctccctacctattctgtccttggaat 528
Query: 317 tacaatatcctgcttgaggaagattgtatgtcacagacattgttttgatcgatatgtggt 376
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 527 tacaatatcctgcttgaggaagattgtacgtcacagacattgttttgatcgatatgtggt 468
Query: 377 ccagtttgtcagcaggaaaaatattcatctcaaggattgatttcttgttcagttttctct 436
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 467 ccagtttgtcagcaggaaaaatattcatctcaaggattgatttcttgttcagttttctct 408
Query: 437 gaaatacctccattatagttgaaattgagttagataaacaaccatgcggttctccattaa 496
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 407 gaaatacctccattatagttgaaattgagttagataaacaaccatgcggttctccattaa 348
Query: 497 tgattaagctataggttcttagctttaaacacaaattccttaaataagctattattgcta 556
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 347 tgattaagctataggttcttagctttaaacacaaattccttaaataagctattattgcta 288
Query: 557 gaatattttcctagctatcagcatttttcatgaatttggtaaatatacaatcattatatt 616
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 287 gaatattttcctagctatcagcatttttcatgaatttggtaaatatacaatcattatatt 228
Query: 617 gtttcttagtg 627
|||||||||||
Sbjct: 227 gtttcttagtg 217
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 34
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 627
Length of database: 1027
Length adjustment: 10
Effective length of query: 617
Effective length of database: 1017
Effective search space: 627489
Effective search space used: 627489
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
