Query= MSMg01no545_k04.b1 MSMg01no545_k04.b1 CHROMAT_FILE:
MSMg01no545_k04.b1 PHD_FILE: MSMg01no545_k04.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:26:40 2005
(589 letters)
>mm_chr14_17221881_17222868
Length = 988
Score = 1100 bits (569), Expect = 0.0
Identities = 581/585 (99%), Gaps = 1/585 (0%)
Strand = Plus / Plus
Query: 5 gaattctacatatgttcaaataattttatcagataaatgtgtctgtttatttttataaaa 64
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattctacatatgctcaaataattttatcagataaatgtgtctgtttatttttataaaa 264
Query: 65 aatccatggacatgttaaatgtgaaagatgcttcactgtaaaaatgttgtggtaaatgaa 124
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 a-tccatggacatgttaaatgtgaaagatgcttcactgtaaaaatgttgtggtaaatgaa 323
Query: 125 tttttttctgtgagctgattctttgttacaaaagttagaaacattaaagaaatacttgtg 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 tttttttctgtgagctgattctttgttacaaaagttagaaacattaaagaaatacttgtg 383
Query: 185 tatattttcttttaaagacatggatgaataatatgatgaagacttctgaagccaaaatta 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 tatattttcttttaaagacatggatgaataatatgatgaagacttctgaagccaaaatta 443
Query: 245 aacattttgatggtgaagattatacatgcataacattccagccagatctatccaaattta 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 aacattttgatggtgaagattatacatgcataacattccagccagatctatccaaattta 503
Query: 305 agatggaaaaacttgacaaggacattgtggccctcatgaccagaagagtatatgatttag 364
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 504 agatggaaaaacttgacaaggacattgtggccctcatgaccagaagagcatatgatttag 563
Query: 365 ctgggtcctgtaaaggagtcaaggtcatgtttaatgggaagaagttgcctgtaagtgtct 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 ctgggtcctgtaaaggagtcaaggtcatgtttaatgggaagaagttgcctgtaagtgtct 623
Query: 425 tggaaaatattttaatagtgttattattttgtagacttgtttcatcttgctttttaaatc 484
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 tggaaaatattttaatagtgttattattttgtagacttgtttcatcttgctttttaaatc 683
Query: 485 ttgtctgatcttttttaactggtgtgtttaaatgattactattttaatgtgattattgat 544
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 684 ttgtctgatcttttttaactggtgtgtttaaatgattgctattttaatgtgattattgat 743
Query: 545 ttatttgttctattatcttgctagctaatttctgtttcttgcata 589
|||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 744 ttatttgttctattatcttgctagctaatttctgtttcttgcata 788
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 589
Length of database: 988
Length adjustment: 10
Effective length of query: 579
Effective length of database: 978
Effective search space: 566262
Effective search space used: 566262
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no545_k04.g1 MSMg01no545_k04.g1 CHROMAT_FILE:
MSMg01no545_k04.g1 PHD_FILE: MSMg01no545_k04.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:26:40 2005
(588 letters)
>mm_chr14_17373376_17374363
Length = 988
Score = 977 bits (505), Expect = 0.0
Identities = 508/509 (99%)
Strand = Plus / Minus
Query: 1 tgatgtgagagctattatcctgtccattttaacgccccacacaccccaatgagcgcttac 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 509 tgatgtgagagctattatcctgtccattttaacgccccacacaccccaatgagcgcttac 450
Query: 61 aaacctggttcaaatagaccaggatgcactggtttttttaattaccaattcttgattttc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 449 aaacctggttcaaatagaccaggatgcactggtttttttaattaccaattcttgattttc 390
Query: 121 cgatttaaagcctagagtcatctgtccacagagcagttgctttctcagaattcgtacaga 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 389 cgatttaaagcctagagtcatctgtccacagagcagttgctttctcagaattcgtacaga 330
Query: 181 acatcatgtggaaggcacagtgactctaaagattaagaaactacccaagagacattaaaa 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 329 acatcatgtggaaggcacagtgactctaaagattaagaaactacccaagagacattaaaa 270
Query: 241 agtgtcttgtaggctagagagaccactcagcacttagaacttgattctcttgtagaaggc 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 269 agtgtcttgtaggctagagagaccactcagcacttagaacttgattctcttgtagaaggc 210
Query: 301 caggcttctgacattaaactgtaatacagaacaattgtgataaaaactgcatggtactgg 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 209 caggcttctgacattaaactgtaatacagaacaattgtgataaaaactgcatggtactgg 150
Query: 361 tagagtgacagacaggtagatcaatggaatagaattgaagacccagaaatgaatccacac 420
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 149 tagagtgacagacaggtagatcaatggaatagaattgaagacccagaaatgaatccacgc 90
Query: 421 acctatggtcacttgatctttgacaagtgagctaaaaccatccagtggaaaagagacaac 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 89 acctatggtcacttgatctttgacaagtgagctaaaaccatccagtggaaaagagacaac 30
Query: 481 attttcaacaaatggtgctggcacaactg 509
|||||||||||||||||||||||||||||
Sbjct: 29 attttcaacaaatggtgctggcacaactg 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 588
Length of database: 988
Length adjustment: 10
Effective length of query: 578
Effective length of database: 978
Effective search space: 565284
Effective search space used: 565284
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
