BAC Information

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BAC

Clone NameMSMg01-546A03
Chromosome14 (Build37)
Map Location 70,187,224 - 70,187,554
singlet/doubletsinglet
Overlap geneRhobtb2
Upstream geneAdamdec1, Adam28, LOC641033, LOC100043082, Stc1, EG545808, Nkx2-6, Nkx3-1, Slc25a37, D930020E02Rik, Entpd4, Loxl2, R3hcc1, Chmp7, Tnfrsf10b
Downstream geneLOC100043701, 1700081D17Rik, LOC668397, Egr3, Bin3, 2610301G19Rik, 9930012K11Rik, Pdlim2, Sorbs3, Ppp3cc, LOC100043115, Slc39a14, EG668450, Piwil2, Polr3d, Phyhip, Bmp1, Sftpc, Lgi3, Reep4, Hr, Nudt18, Rai16, Epb4.9, Fgf17, Npm2, Xpo7, LOC668443, Dok2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-546A03.T7 (MSMg01no546_a03.b1)MSMg01-546A03.TJ (MSMg01no546_a03.g1)
ACCAG610934AG610935
length851775
length of high quality
(start - end)
86 (73 - 158)331 (72 - 402)
definitionCHROMAT_FILE: MSMg01no546_a03.b1 PHD_FILE: MSMg01no546_a03.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:27:09 2005CHROMAT_FILE: MSMg01no546_a03.g1 PHD_FILE: MSMg01no546_a03.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:27:09 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
AAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCACAGGATCCGCGGA
ATTCAAGGATAATCTCAAACAAGTCTCCAAGGACTCACGAAGGAAATATA
AAAAGGGGAAACGCCAGGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTG
TGTGTGTCTGTGTGTGCCTGTGTGTGTGTGCGTATCACCAATCCCTCAAT
ACTCCCATACCTAACACCCTCCATACCTTAACCAAACCCCAACCCCCACT
ATCCTAACACCGAATAATACTATCCAAACCCAAACATAACTAAACACAAC
TTCAACCAACAACTCCACCCTATCACCCTCACATTCCCCCCCTCACACCC
CTCACCTATACATGACTCCCTAATTCAATAAACTTTCCCCCCCAAACTAA
TTACAAACCTTTACAACCCAACCCTTTACATGCACACACCCAACAACAAT
CCCCCCTTACACATCCCAACCTATAACTTATCAAAATAACAAACACACCC
CAATTCCCCACCCCCCTACCCCCTCGCCTACTACACACACCTCTCCAAAC
CCTACTCCTACATACCTCTCAAATCCCCACCCCCTCTAACTCTTTTACTC
CCCCCCCTCCCAACAATTACAACACTCATCCCACCCCAACTCTACACCCC
ACTTTAATCAAACCACCCCCCTCCTCCACTCCCCCTCACCCACCAATATC
CTCCACCCTTTCCCACTACCACCTTTTAACAACCCACCCCATAAAAACCT
CACACCACCAACACTCACCCACCCAACATATGACACCCCAACACCACACA
CACCAATCCTCCATAACCCCCACCATTTCACCACTTTCCTCATCTCTCCA
N
ATGCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXCCTCGTCACCTGTCGGGTAGAGGGGATGA
TACAGAAGAGCAGAAGGACAAGGGCTAATAAGGACAACAGCAGCGGGATC
AGAAGACGGTGGCAGCATCTCAGACCACAGCCGAGGAGGAGGAGGAGGGG
GATGCTGAGCCCGCTGCTGAGGAGGACGGTGATGAGGGACTGTTCCAAAA
CAGCCACCGCCGCTTGGGCTGCCTCCGCAGGTGTAAATAGTCCTCTTTCT
CTCGCTCCTTCCGCGCACGCTGATAGTGGTCCTCTTCTTTCAGGTACCAG
ACTGGCGGCCACCGGTGCTTCTCAAAGTACTCCTGGTTTTCTAGACAACA
ATGCCTGGGGTGCGAAGTTAGGAGGCATTTTCAGGGCAGCGCTAAGTCTA
CCCTGCCCATGCTTTGGGTTAGCCCTGCCACAGAAACTTGTGGGGCTGAT
TTTGAGACTCACCTGGAGACATAGCCCTCATGTTTTCGGGGGAACTTGCG
GCACACGCTGTTTGTACTTGGGTTGCAGATTTTGGTGAATACATCTGTCC
GGTCCATCTTGTGATCGCTTCTATGGTAACTGTGAAGGTGGCACTTGTTA
CACGATTCTTTTACCTGGTTACAAGAGTACTCCCTTTCCAGCGAGGGTCG
CTTTGTATTGACTTCGTTTCCCCGGGGATTTCTGGTGCCCGGTCAACATT
TTTCTTTGGCGTATTCTTTTATTGN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no546_a03.g1 MSMg01no546_a03.g1 CHROMAT_FILE:
MSMg01no546_a03.g1 PHD_FILE: MSMg01no546_a03.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:27:09 2005
         (331 letters)



>mm_chr14_70187024_70187754
          Length = 731

 Score =  625 bits (323), Expect = 0.0
 Identities = 329/331 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   cctcgtcacctgtcgggtagaggggatgatacagaagagcagaaggacaagggctaataa 60
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 201 cctcgtcacctgtcgggtagaggggatgatacagaagagcagaaggacaagggctaatga 260

                                                                       
Query: 61  ggacaacagcagcgggatcagaagacggtggcagcatctcagaccacagccgaggaggag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ggacaacagcagcgggatcagaagacggtggcagcatctcagaccacagccgaggaggag 320

                                                                       
Query: 121 gaggagggggatgctgagcccgctgctgaggaggacggtgatgagggactgttccaaaac 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gaggagggggatgctgagcccgctgctgaggaggacggtgatgagggactgttccaaaac 380

                                                                       
Query: 181 agccaccgccgcttgggctgcctccgcaggtgtaaatagtcctctttctctcgctccttc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 agccaccgccgcttgggctgcctccgcaggtgtaaatagtcctctttctctcgctccttc 440

                                                                       
Query: 241 cgcgcacgctgatagtggtcctcttctttcaggtaccagactggcggccaccggtgcttc 300
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 441 cgcgcacgctgatagtggtcctcttctttcaggtaccagactggcggccaccggtgtttc 500

                                          
Query: 301 tcaaagtactcctggttttctagacaacaat 331
           |||||||||||||||||||||||||||||||
Sbjct: 501 tcaaagtactcctggttttctagacaacaat 531


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 331
Length of database: 731
Length adjustment: 9
Effective length of query: 322
Effective length of database: 722
Effective search space:   232484
Effective search space used:   232484
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)