Query= MSMg01no546_f15.b1 MSMg01no546_f15.b1 CHROMAT_FILE:
MSMg01no546_f15.b1 PHD_FILE: MSMg01no546_f15.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:27:37 2005
(713 letters)
>mm_chr14_121210497_121211609
Length = 1113
Score = 1272 bits (658), Expect = 0.0
Identities = 697/710 (98%), Gaps = 4/710 (0%)
Strand = Plus / Plus
Query: 6 ggaattcaattatctaagatgaaggggaatgcttttacccgcatccagtgttcaaatgaa 65
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 206 ggaattcaattatctaagatgaaggggaatgcttttacccgcatccagtgttcaaatgaa 265
Query: 66 ggtcattattgctctccagctttgcataatgattcaagcaacaaacttgaattgctttct 125
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 266 ggtcattattgctctccagctttgcataatgattcaagcaacaaacttgaattgctttct 325
Query: 126 tcgtatcctccaagacacaggcctggttgctattcattaatataggtgttttaaagacag 185
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 326 tcgtatcctccaagacacaggcctggttgctattcattaatataggtgttttaaagacag 385
Query: 186 aatttaactcctcggtgagcaaaagacccagctgtaaaaatatcccaagtgcccacgcca 245
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 386 aattcaactcctcggtgagcaaaagacccagctgtaaaaatatcccaagtgcccacgcca 445
Query: 246 gcacctctgtgcaatcccggcatataacgccatgatgaagtaaatctgtgtgtgacttca 305
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 446 gcacctctgtgcaatcccggcatataacgccatgatgaagtaaatctgtgtgtgacttca 505
Query: 306 gagtaaacaggtctctaagattctgcgccatacaaacgtccactttgtcctggtgtttga 365
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 506 gagtaaacaggtctctaagattctgcgccatgcaaacgtccactttgtcctggtgtttga 565
Query: 366 gcaaagcacctgccttcctggtggaggagccagctgcacttggtaggaaacagaccga-g 424
||||||||||||||||||||||||||||||||| ||| |||||| |||| |||||| | |
Sbjct: 566 gcaaagcacctgccttcctggtggaggagccaggtgcgcttggtcggaagcagacc-acg 624
Query: 425 tattggtgtcag-acctggtttgggcctgggtagaaactctataccttgatgaaccaggg 483
||||||| | || ||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 625 tattggtat-aggacctggtatgggcctgggtagaaactctataccttgatgaaccaggg 683
Query: 484 taagtctgcttttatgttccctagacaccatgcttctgggtaacgttgcatcagaaagca 543
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 684 taagtctgcttttatgttccctagacaccatgcttctgggtaacgttgcatcagaaagca 743
Query: 544 cattcctcttaacaaaaattcgcaaatcactcataaatatgaaaatgtttcacaaaatat 603
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 744 cattcctcttaacaaaaattcgcaaattactcataaatatgaaaatgtttcacaaaatat 803
Query: 604 aaggcatcctgcaaataccaagagtttcctattccatcctattcagggtggattataatc 663
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 804 aaggcatcctgcaaataccaagagtttcctattccatcctattcagggtggattataatc 863
Query: 664 atttacaacactagtgtgctggtatttctcaaatacccactttaccaatg 713
||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 864 atttacaacactagtgtgctggtatttctcaaatacccactttaccaatg 913
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 34
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 713
Length of database: 1113
Length adjustment: 10
Effective length of query: 703
Effective length of database: 1103
Effective search space: 775409
Effective search space used: 775409
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)
| Query= MSMg01no546_f15.g1 MSMg01no546_f15.g1 CHROMAT_FILE:
MSMg01no546_f15.g1 PHD_FILE: MSMg01no546_f15.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:27:37 2005
(593 letters)
>mm_chr14_121337045_121338037
Length = 993
Score = 1118 bits (578), Expect = 0.0
Identities = 590/594 (99%), Gaps = 2/594 (0%)
Strand = Plus / Minus
Query: 1 tttcccaaggattttgcacatcctggcccatgctgagatcatgtaagaaatctgggggaa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 793 tttcccaaggattttgcacatcctggcccatgctgagatcatgtaagaaatctgggggaa 734
Query: 61 caattccaaacaggccgtaaggcaatgggtaactgagacagataaagccactttcccttc 120
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 733 c-attccaaacaggccgtaaggcaatgggtaactgagacagataaagccactttcccttc 675
Query: 121 ttgaggaaacattcattgacatgttcatgcatttcccaatggcacacactccaaacattc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 674 ttgaggaaacattcattgacatgttcatgcatttcccaatggcacacactccaaacattc 615
Query: 181 ccaatggagctggcaggtgaggatgtcctacttttccccctatgatgcaattacaatttc 240
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 614 ccaatggagctggcaggtgaggctgtcctacttttccccctatgatgcaattacaatttc 555
Query: 241 ttctttctctgtatctgtaccac-ttaactgaaagtgaagctgacttttaggccttaggc 299
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 554 ttctttctctgtatctgtaccactttaactgaaagtgaagctgacttttaggccttaggc 495
Query: 300 ctcgatctttttggaggaggaacacatactgcctggcacagcaccacacacaccactgaa 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 494 ctcgatctttttggaggaggaacacatactgcctggcacagcaccacacacaccactgaa 435
Query: 360 accccactcagtgccgcacacgagggagaggacaggtttcaggcactgtggctctatctg 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 434 accccactcagtgccgcacacgagggagaggacaggtttcaggcactgtggctctatctg 375
Query: 420 ccgtctgctccttctctcttgaggtctaccacccaccctctcccttctaccaccagtgcc 479
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 374 ccgtctgctccttctctcttgaggtctaccacccacccgctcccttctaccaccagtgcc 315
Query: 480 atttccattgctcatgtctcctgttctgcatcgcatctttcacagctgaggaaaatcttg 539
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 314 atttccattgctcatgtctcctgttctgcatcgcatctttcacagctgaggaaaatcttg 255
Query: 540 cttacttagcacgtgttccctatttttcctacccatttgtatgttgatggacag 593
||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 254 cttacttagcacgtgttccctatttttcctacccatttgtatgttgatggacag 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 593
Length of database: 993
Length adjustment: 10
Effective length of query: 583
Effective length of database: 983
Effective search space: 573089
Effective search space used: 573089
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
