Query= MSMg01no546_k04.b1 MSMg01no546_k04.b1 CHROMAT_FILE:
MSMg01no546_k04.b1 PHD_FILE: MSMg01no546_k04.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:27:59 2005
(685 letters)
>mm_chr14_115292900_115293973
Length = 1074
Score = 1222 bits (632), Expect = 0.0
Identities = 665/682 (97%), Gaps = 13/682 (1%)
Strand = Plus / Plus
Query: 5 gaattcaccacagccaatccaacagtggcagcagttgtacttcccttagactgtctgatc 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcaccacagccaatccaacagtggcagcagttgtacttcccttagactgtctgatc 264
Query: 65 cccgagagacacacgtcatcacgccaaacgacccctggccgactgttagtaggcactgca 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 cccgagagacacacgtcatcacgccaaacgacccctggccgactgttagtaggcactgca 324
Query: 125 aacatgttatactgttgatccttcgattgttcctctaagaacagagtatcagagtcagct 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 aacatgttatactgttgatccttcgattgttcctctaagaacagagtatcagagtcagct 384
Query: 185 tcaggttgaccgaatgacaaaatcaattttacacattgctgcattcatacacatcacaac 244
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 tcaggttgaccgagtgacaaaatcaattttacacattgctgcattcatacacatcacaac 444
Query: 245 cagacaaccagactgtactgtgcccacaagcctccctcgcagtgacagacaccctgacgt 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 cagacaaccagactgtactgtgcccacaagcctccctcgcagtgacagacaccctgacgt 504
Query: 305 cgctgctttacaaagtctgaacattcctctttggggtaggcaaggccactctgcctgtct 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 cgctgctttacaaagtctgaacattcctctttggggtaggcaaggccactctgcctgtct 564
Query: 365 cctt-tcggtctgaaagtgttttctgggtttgcttacagataagtgtaattacatcccta 423
|||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 ccttgt-ggtctgaaagtgttttctgggtttgcttacagataagtgtaattacatcccta 623
Query: 424 cccgtctgacaaagcagaagcagaagcagaaatgcttgctgaaatggcgtgaggccttac 483
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 624 cccgtctgacaaagcagaagcagaag------tgcttgctgaaatggcgtgaggccttac 677
Query: 484 aactgtgagcgctgcgctgcgctgccttccaccacactctctcttttcttactgctgcag 543
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 678 aactgtgagcgctgcgctgc-----cttccaccacactctctcttttcttactgctgcag 732
Query: 544 tgttggcagcaagtcacctccctgctttcccagaaggatgcagaaccctgagattagcag 603
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 733 cgttggcagcaagtcacctccctgctttcccagaaggatgcagaatcctgagattagcag 792
Query: 604 aaccctcagcaccgagcctgaaggaatagagctgtccttcccagatgacctgacaatcca 663
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 793 aaccctcagcaccgagcctgaaggaatagagctgtccttcccaggtgacctgacaatcca 852
Query: 664 ttctctgtgttctttaagtctc 685
||||||||||||||||||||||
Sbjct: 853 ttctctgtgttctttaagtctc 874
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 34
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 685
Length of database: 1074
Length adjustment: 10
Effective length of query: 675
Effective length of database: 1064
Effective search space: 718200
Effective search space used: 718200
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no546_k04.g1 MSMg01no546_k04.g1 CHROMAT_FILE:
MSMg01no546_k04.g1 PHD_FILE: MSMg01no546_k04.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:27:59 2005
(663 letters)
>mm_chr14_115461935_115462997
Length = 1063
Score = 1245 bits (644), Expect = 0.0
Identities = 659/664 (99%), Gaps = 2/664 (0%)
Strand = Plus / Minus
Query: 1 tccttagaacaccaacaatgaaaatcgatagtatttgtattatgttttgcctcatttagg 60
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 863 tccttagaacaccaacaatgaaaatggatagtatttgtattatgttttgcctcatttagg 804
Query: 61 gctagttactacagctgtctcctctgcctatattttcctgtgtgactgcagacataaaga 120
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 803 gctagttactacagctgtctcctctgcctatattttcctgtgtgactgccgacataaaga 744
Query: 121 atctcatgttggggatgaagagtcttcctatttaggaatatcccagaattcgaatgcatt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 743 atctcatgttggggatgaagagtcttcctatttaggaatatcccagaattcgaatgcatt 684
Query: 181 ataattacatactcaagggaacttagctgaacacattttttttttttacatttacattat 240
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 683 ataattacatactcaagggaacttagctgaacaca-tttttttttttacatttacattat 625
Query: 241 gggctctgacttcaggcagttgacagtaaaaagtaatgagatgtagccaaagatttttgc 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 gggctctgacttcaggcagttgacagtaaaaagtaatgagatgtagccaaagatttttgc 565
Query: 301 aaacactttttttttctggcaaaggaaatatgagaggtagacccaagggaaagaaatact 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 aaacactttttttttctggcaaaggaaatatgagaggtagacccaagggaaagaaatact 505
Query: 361 gtagatttcacatgtcagatagaaaataatgtattaaatttggaaaggatatgatggaaa 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 gtagatttcacatgtcagatagaaaataatgtattaaatttggaaaggatatgatggaaa 445
Query: 421 agagagagatgctgtgtgttaggaaacatgttagactaataacaaaaagcccaagggcaa 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 agagagagatgctgtgtgttaggaaacatgttagactaataacaaaaagcccaagggcaa 385
Query: 481 acttaaaaagaaagaaaaaaaaatt-gctattctcccatgtgtctgtccaggagtcaagt 539
||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||
Sbjct: 384 acttaaaaagaaagaaaaaaagatttgctattctcccatgtgtctgtccaggagtcaagt 325
Query: 540 gacacaagtaaaggaaagacagggtcacaaggcacattcacgttctctgtgtggactctg 599
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 gacacaagtaaaggaaagacagggtcacaaggcacattcacgttctctgtgtggactctg 265
Query: 600 aaacttgagacttcctttaattctgtgttcaacaaaatgggtcacagacactgtttccac 659
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 aaacttgagacttcctttaattctgtgttcaacaaaatgggtcacagacactgtttccac 205
Query: 660 tcag 663
||||
Sbjct: 204 tcag 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 4
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 663
Length of database: 1063
Length adjustment: 10
Effective length of query: 653
Effective length of database: 1053
Effective search space: 687609
Effective search space used: 687609
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
