BAC Information

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BAC

Clone NameMSMg01-546N06
Chromosome14 (Build37)
Map Location 82,040,215 - 82,040,817
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC639207
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-546N06.T7 (MSMg01no546_n06.b1)MSMg01-546N06.TJ (MSMg01no546_n06.g1)
ACCAG611559AG611560
length1,521745
length of high quality
(start - end)		---604 (71 - 674)
definitionCHROMAT_FILE: MSMg01no546_n06.b1 PHD_FILE: MSMg01no546_n06.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:28:15 2005CHROMAT_FILE: MSMg01no546_n06.g1 PHD_FILE: MSMg01no546_n06.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:28:15 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TACTCTCAGTTTAGATAACTCGTCGCGATTGTGATGTATATTCTATACGC
GCGCCGACGCTTACTACTTGCGTGGTTGATTCTCACTCCTCCACCATCTT
CGATTTTACTCTTCCCTTGCGTCTATTTTGTGTATCCGGACGTCTGACGT
ATTGTGCTTAATCGCCATTATTAATTCACAACATGAGTAGATGCCATTAT
ATGTCGTTTGTTGTGTAGAATCGATACACGAGATCCAACGTGGGCGTGTT
TCGGGTTGGCGCGCGCGTCTGGATAGTAGATGGAGAGGATGCATACAATG
TCGGCGCCTATATATGTCTGACTGTAATATACTGACTTACGAGAGCGAAG
AACGCAGAATACTGATCCCGCATGACGCGCGACGCTCGACGCGTTCTACG
AATTAATTGTTGTTACCATGCTCGTACTGCACAGCTGGCCAGACCTGCGC
CGCTTGACTGGACATCGTAGTGTGAGATGGATGAGATTAACTATAACTAT
GGCCACTCTGCGTGACCACCATAGCGCATGTCCGTGAACCCATATCTATA
TATTGGTGTGCTTGCTACGCTGTACAGAGCAGACCCGACGNACTACATCA
CATTCAATACTATTACATGCCGATATTCGCACCAGCTAACATCCAACCAT
TAACCGCTCTATGTTATATCTAATTAATAGAGGATAGTACTCGCGTAGTG
TGTATCGCTATTGTTCTGTCGGTATNGTAGCGTATCTTGTCGTTTCCGAT
GCTGGCTCGCTAGAATACACTATAGAGCATGTGTTGCGCGTAGGCGCTGC
TGGATGTGGCACGCAGTACTGGTANCTTGTTGCATCGCGCCATGATGTAT
ANTACTACGTTGACTCGCTGCGACATATTTCGTAGATACTGTGTACTCAC
TGATTAATTTGACCACAGTACGAACNTGTGAATGTGGCTAGCCGTGCGAG
TCTCTATAACTTTCCGACACGTATTGCTTATATATATAGTGCACAGTGTG
TNGNCGATGACAGACAACACGTAGACTAGTATTAGTTTATATATATCCTT
CTATGTGTGNTGCAGTAGCATAGATACTCTCAATGCCGATAGACGCGTCT
GAGTCGGNAGTATATATCACAACAATAGGTATATTGACATCACTCACACA
TCACAGTATGATCGCGTGCCAGCATATGACACAGGTGTATCTCGCCGCAN
GTGAAGTCGTTAAATATACTCATAATCACATCACGTAGTGCAGCTTACAC
GGTACACGTATCGTGTGTCGATCTTCTGAATCTTACGTCTACTCTACACA
CTTGTCTCCGTATTATATCATTACATATTCATTCGACTGATAGGAGAATA
TGAACAGTACTCCGCGTGACATCATATTACATCAGCTCACGTGTCTCATC
GGTTATACAACCAGTATCGCGGANGTAATGCGACAGAGGTGTGAAATATC
ACTATGTGCGTATATGTGNCTACGAGCGTCGTAACTGTGATCGCAAGCGC
GTGAGTCTGCCGATTCTCATN

GCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXTACTACCACCTGTACTTTGGACAGTTATGG
CACTCTGTATTAACTGCAGTTACTTTGATGGAGAGTAAGAGCTACATCTG
TGAGCATAGAGATACTTATTTAGTTTGATCCTGTGTACATTTAGCAAAAT
AATGGTGTAGTATCTTCTCAGGCTTGTGAGTTCCCCAGCCATGGGTGCTT
GGAAAGATTTACAATACTAGGTGTAAGTTTCCCCTATGGAATGTCTTAAA
TCAGAAAGTCATTGATTATTCACACAATGTTAATTGCACTATTGCAGCAA
TGGGCATCTATTGTCTGTGTGATCATTTTGATAACTTACTGGGTTCTTAG
CTGCTTAAGTCTGCTAATGGCTCCACTCTTCTAGCACCTCAATTTGCAGC
TTCCAATACTATATGATGTATCTATCAGGGAAGAATATTCCAGGATAGCA
ACAGACAAATTTCTCCACACTCAACCAAATTAGAAAATTTCAACAAACAA
TGTACAGCAGTAATGGGACCAACTATAGAATACAGGTTGTTAGAAATAAA
GCGAAAATTTAGTGCTGCCTTTCACTATTGATCAATTCCCTCCAGTGCTC
TCATTCTTTTTCTATCTTCCTCTTTATAATTTTATTCTTTTTATTTTCAT
GTTGGCAATCTTAAATGGTATGTATTTAGGCATCACTTTATTGNA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no546_n06.g1 MSMg01no546_n06.g1 CHROMAT_FILE:
MSMg01no546_n06.g1 PHD_FILE: MSMg01no546_n06.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:28:15 2005
         (604 letters)



>mm_chr14_82040014_82041017
          Length = 1004

 Score = 1129 bits (584), Expect = 0.0
 Identities = 599/604 (99%), Gaps = 1/604 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   tactaccacctgtactttggacagttatggcactctgtattaactgcagttactttgatg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 202 tactaccacctgtactttggacagttatggcactctgtattaactgcagttgctttgatg 261

                                                                       
Query: 61  gagagtaagagctacatctgtgagcatagagatacttatttagtttgatcctgtgtacat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 262 gagagtaagagctacatctgtgagcatagagatacttatttagtttgatcctgtgtacat 321

                                                                       
Query: 121 ttagcaaaataatggtgtagtatcttctcaggcttgtgagttccccagccatgggtgctt 180
           |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 322 ttagcaaaataatggtgtagtatcttctcaggcttgtgagctccccagccatgggtgctt 381

                                                                       
Query: 181 ggaaagatttacaatactaggtgtaagtttcccctatggaatgtcttaaatcagaaagtc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 382 ggaaagatttacaatactaggtgtaagtttcccctatggaatgtcttaaatcagaaagtc 441

                                                                       
Query: 241 attgattattcacacaatgttaattgcactattgcagcaatgggcatctattgtctgtgt 300
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 442 attgattactcacacaatgttaattgcactattgcagcaatgggcatctattgtctgtgt 501

                                                                       
Query: 301 gatcattttgataacttactgggttcttagctgcttaagtctgctaatggctccactctt 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 502 gatcattttgataacttactgggttcttagctgcttaagtctgctaatggctccactctt 561

                                                                       
Query: 361 ctagcacctcaatttgcagcttccaatactatatgatgtatctatcagggaagaatattc 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 562 ctagcacctcaatttgcagcttccaatactatatgatgtatctatcagggaagaatattc 621

                                                                       
Query: 421 caggatagcaacagacaaatttctccacactcaaccaaattagaaaatttcaacaaacaa 480
           |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 622 caggatagcaacagacaaattt-tccacactcaaccaaattagaaaatttcaacaaacaa 680

                                                                       
Query: 481 tgtacagcagtaatgggaccaactatagaatacaggttgttagaaataaagcgaaaattt 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 681 tgtacagcagtaatgggaccaactatagaatacaggttgttagaaataaagcgaagattt 740

                                                                       
Query: 541 agtgctgcctttcactattgatcaattccctccagtgctctcattctttttctatcttcc 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 agtgctgcctttcactattgatcaattccctccagtgctctcattctttttctatcttcc 800

               
Query: 601 tctt 604
           ||||
Sbjct: 801 tctt 804


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 604
Length of database: 1004
Length adjustment: 10
Effective length of query: 594
Effective length of database: 994
Effective search space:   590436
Effective search space used:   590436
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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