BAC Information

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BAC

Clone NameMSMg01-547B11
Chromosome14 (Build37)
Map Location 20,930,526 - 20,931,226
singlet/doubletsinglet
Overlap genenone
Upstream geneEG632498, EG667341, LOC667344, LOC619996, EG434616, LOC675165, 1700110I01Rik, EG664814, LOC100039452, LOC100038983, LOC100039441, EG432825, LOC673583, EG664855, Nid2, 2700060E02Rik, LOC100039534, Gng2, 1810063B07Rik
Downstream geneKcnk5, LOC100039106, Kcnk16, Nudt13, Ecd, AA536717, Dnajc9, Mrps16, Ttc18, Anxa7, Zmynd17, Ppp3cb, Usp54, Myoz1, Synpo2l, Sec24c, Fut11, Chchd1, 2310021P13Rik, Ndst2, Camk2g, Plau, EG620119, Vcl, Ap3m1, Adk
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-547B11.T7 (MSMg01no547_b11.b1)MSMg01-547B11.TJ (MSMg01no547_b11.g1)
ACCAG611761AG611762
length758839
length of high quality
(start - end)		693 (34 - 726)239 (63 - 301)
definitionCHROMAT_FILE: MSMg01no547_b11.b1 PHD_FILE: MSMg01no547_b11.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:28:37 2005CHROMAT_FILE: MSMg01no547_b11.g1 PHD_FILE: MSMg01no547_b11.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:28:37 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTCTCTGA
TACCTGTGTTGGGGGGGGCATCAAGAGTGGGGAAGCAGGCCTAGCTATGC
TCAGAGGTGACTTTTCTAATAAAGGTATTTGCCGCCAACCTTCATGACAT
GAGTTCAACTACAGAGACCCACATGATATGGAAAGATAACCAACTCCTAA
GAGTTGTCTTCTGGCCTCCATATGTGTGCTCTGAGACAACTCACACAAAC
ACACACACTCATACACACACACTCACAGACACAAACACACTCATATACAC
ACACATGCACACATGCACACTCATACACAGTCAATCAGAAAAGTAAAATA
CATTTTAAGTACAAGAAAGCAAAGAAAATAGACTCCTCCAGGCTTTACCC
TCTCGGGGAGTCTCGCGTAATCTCTGTTATGTCTATGTAGCAGTTCTTTA
GACTAAACACACCCTCCCATCCTTTTGATGAGCTTTGGTCTATGTCATTT
CAGAACAGGAATTTTTGTAATCTCTTAGAGTCAGACATCTTTCGGGATCT
AGTCAAAGACTGGATGGCTCCTCAGAAGGGACACATATTTGTAGCTGTTC
ATATATTTTGGCAAACAACCCTTCAAGCTGGTAGGACACCCAAGTTGAAC
ACTCTGGGCCCTAAAGTTGGGAATTGAAGCCATTTTTGGAGAGAGCTCTA
GAAGCTTAAGTGATAACCCCTAACATTACCCGATTTGGGTTTTAAAGGGG
TAGCACAN

GXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXATCATGAGGAAACTCGTTATAAGCCAGGTGGGGTGGTG
CATGCCTGAGCGCCCAGCTCTGGGAATCTGGAGATAGGAGACTCAGGATT
TCGAGGTCAGCCTTGGTAACTCCGTGAGTTGGAGGCCAGCCTGGGCTACC
CTGAGACCCTGTTTCAAAACTACAAAGACAAAAGGAAGGAATAGAAGAGA
GGAACGGAAGGAAGAAGAGAGGGAGGGAGGGAGGGAGGGAGGAAGGGAGG
NCTGNNNNNTTTTTNNNTNNNTNTTTTNTNTTTTTTNTNTTTTTTTTGGT
TTTGTTTTTTTTTTTTTTTTTTGTTTGGTTGTTTGTGGTTGTTTTTGGTG
TGTTGTTGTTCTGNTGTGTTTTGTTGGTTTTTGTTTTTGTGGTTTTTTGT
GTGTGTTGGTTGTTGTGTTTTTTTTTTTTGTTTGGTTTGCTTTTTTGTGT
TGGTTTTGTTTGTTTGTTTTGCTTNTTTTTGTGTTGTTTTTGTTGTTTTG
TTTGTTTGTTTTTTTGTTTTNTTTTTTTTCTGGTTTTGTTTTTTTTTTTG
TTTTGTTGGTGTCGGGGGTTTTTTTTGTTTTCTTCTTTTTTCCTTCCTGT
CTCCTCCCTGTGTTGTCCTCGCTTTGTTTTGCTTCGCTTGCCTTTTTTTC
CTTGTGCTTTTGGTGTTTTTGTCTCGCTTTTTTCTCCCTTGGCGGTTTGT
GCGCTTGCTTATCTCGGTGGGTTGTCGTTCTTTGTTTCTTTTTTCTTCTT
CTTGTTGTTGTTTCGCGTGCTTCTCTGTTTGTCCTTCTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no547_b11.b1 MSMg01no547_b11.b1 CHROMAT_FILE:
MSMg01no547_b11.b1 PHD_FILE: MSMg01no547_b11.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:28:37 2005
         (693 letters)



>mm_chr14_20930334_20931426
          Length = 1093

 Score = 1208 bits (625), Expect = 0.0
 Identities = 677/701 (96%), Gaps = 12/701 (1%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattctctctg-atacctgtgttggggggg-----------gcatcaagagtggggaag 52
           |||||||||||| || |||||||||||||||           ||||||||||| ||||||
Sbjct: 193 gaattctctctgaattcctgtgttgggggggggggcgggtaagcatcaagagtagggaag 252

                                                                       
Query: 53  caggcctagctatgctcagaggtgacttttctaataaaggtatttgccgccaaccttcat 112
           |||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 253 caggcctacctatgctcagaggtgacttttctaataaaggtgtttgccgccaaccttcat 312

                                                                       
Query: 113 gacatgagttcaactacagagacccacatgatatggaaagataaccaactcctaagagtt 172
           |||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 313 gacatgagttcaactatagagacccacacgatatggaaagataaccaactcctaagagtt 372

                                                                       
Query: 173 gtcttctggcctccatatgtgtgctctgagacaactcacacaaacacacacactcataca 232
           ||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 373 gtcttctggcctccatacgtgcgctctgagacaactcacacaaacacacacactcataca 432

                                                                       
Query: 233 cacacactcacagacacaaacacactcatatacacacacatgcacacatgcacactcata 292
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 433 cacacactcacagacacaaacacactcatatacacacacatgcacacatgcacactcata 492

                                                                       
Query: 293 cacagtcaatcagaaaagtaaaatacattttaagtacaagaaagcaaagaaaatagactc 352
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 493 cacagtcaatcagaaaagtaaaatacattttaagtacaagaaagcaaagaaaatagactc 552

                                                                       
Query: 353 ctccaggctttaccctctcggggagtctcgcgtaatctctgttatgtctatgtagcagtt 412
           |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 553 ctccaggctttaccctctcggggagtcttgcgtaatctctgttatgtctatgtagcagtt 612

                                                                       
Query: 413 ctttagactaaacacaccctcccatccttttgatgagctttggtctatgtcatttcagaa 472
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 613 ctttagactaaacacgccctcccatccttttgatgagctttggtctatgtcatttcagaa 672

                                                                       
Query: 473 caggaatttttgtaatctcttagagtcagacatctttcgggatctagtcaaagactggat 532
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 673 caggaatttttgtaatctcttagagtcagacatctttcgggatctagtcaaagactggat 732

                                                                       
Query: 533 ggctcctcagaagggacacatatttgtagctgttcatatattttggcaaacaacccttca 592
           |||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 733 ggctccgcagaagggacacacatttgtagctgttcatatattttggcaaacaacccttca 792

                                                                       
Query: 593 agctggtaggacacccaagttgaacactctgggccctaaagttgggaattgaagccattt 652
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 793 agctggtaggacacccaagttgaacactctgggccctaaagttgggaattgaagccattt 852

                                                    
Query: 653 ttggagagagctctagaagcttaagtgataacccctaacat 693
           |||||||||||||||||||||||||||||||||||||||||
Sbjct: 853 ttggagagagctctagaagcttaagtgataacccctaacat 893


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 36
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 693
Length of database: 1093
Length adjustment: 10
Effective length of query: 683
Effective length of database: 1083
Effective search space:   739689
Effective search space used:   739689
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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