BAC Information

Click to search

BAC

Clone NameMSMg01-547K07
Chromosome14 (Build37)
Map Location 77,744,597 - 77,861,234
singlet/doubletdoublet
Overlap geneD230005D02Rik, LOC676171
Upstream geneTsc22d1, 2810032E02Rik, LOC100043753, LOC100043201, 9030625A04Rik, Ccdc122, LOC100043755
Downstream geneEG629678, Gm1587, Dnajc15, Epsti1, AU021034, Tnfsf11, LOC219180
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-547K07.T7 (MSMg01no547_k07.b1)MSMg01-547K07.TJ (MSMg01no547_k07.g1)
ACCAG612182AG612183
length727722
length of high quality
(start - end)		663 (41 - 703)651 (68 - 718)
definitionCHROMAT_FILE: MSMg01no547_k07.b1 PHD_FILE: MSMg01no547_k07.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:29:19 2005CHROMAT_FILE: MSMg01no547_k07.g1 PHD_FILE: MSMg01no547_k07.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:29:19 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(77,860,694 - 77,861,234)(77,744,597 - 77,745,247)
sequence
ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCAGGATCCGCGGAATT
CATTATTTGTGTTGGTCAGAGTCAAATAAATTTAAAGAAGACAAAAAGGA
AACAACTTGGTTTTAATTATCTCCTATCTTCCCTTCATGCATGCACTCAT
TCATACATGTTACATATATGCCAGGCTCTGTGTGTAATATCTGGCTGAGG
GACATGGACAACAGAGCAGATTGCACTTCAGGGAAGATGCACACAGTAAG
TGTGTGTGCAGGCAAGTAGGACGGACCATGTGCTCCTGGGGAAAATAAGG
ATGTTTCCTTTCTGAGGGCCCTTCGAGAGGAGATACACTCTTGTGCTGGA
CTTTAAGATGACTTTTGAAGATAAGATTAGATTTATTTTACACATGTAAG
TGCTTTGCCTGCCTGTACATCTGTGTACCATGTGTATGACTGTTATCGAC
AGAGGTCAAAGGAGGGCACTGGACCTGCTGGGAGCTGGAGTTACAGATGC
TTGTGAGGCCTTTGGGAGCAGAACCAAGGCCCTCTGCAAGGTCCAGTCCT
CTGGGATCAGTCTGGAGAGATTCTGCGGGAGAGTCAGCTTGAGAATGATC
TCCAAGGTTAACGCCTCCCATGTGCAGCATCAACAAGAACGCCATGGGCG
TCCTAAAGCAAAGCCTTATGAATATGGGAAGGAAATGAGCAGAGGGGGGC
CAGAGGTCAACAGATGATGAGGCTGGA

CTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXCTATCTCCTATTATCTCTGGCCTTGTGTGCTGC
CTTAACTCTACGGAATCTGGAAAAACTTTTCGAAAACAAAAAAGGAGAAA
ATGACAGCCAAAATGAAGCCAGACTTGATAACCTGAATTTCTTGTGCATC
ATTAACTTAACAAAGTTGCCTTCTAAGGCATGGCACACATAGGTATTGCA
CATAAAGCTGTGGCCAGAACATGCCAAATGTCCTCCTGCAGAGAGAGAGG
GAACCAGAACAAGTACCCAGATAAGGCAGAAGGCACAGATGGATAATGAC
CAGAAAGCAGAAAGACAAGCTGGCTGGATGGTACCTTTTGGGTGGTCCTT
TCAACAAGGATGCCTTTCTGAAGAGGTGACATTTGGCCACTGTGATCACC
GTGACCATGTGCCACTATTTGGTATTCCACTCATTATCATCATTGTGAAG
AATTGAGTTGCTGGAGATAGAGCTGCTCAGTGGCCAAGCGTGCACATCTG
TAGCATGTGCTCGGCTCTGAGATCCATCTCTAGCACAGTGTCATCAGGCA
GCATGAACGTCTTTCCTCCCTCGCCTTATTTTATTGGATATGTGTTAAGT
TGGAACCATCTTTTGATTGAGATAAGCTTTGTTGAGATTTGCAGGTCTTA
AGCAAGGCCAACTTGTCTTCAN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no547_k07.b1 MSMg01no547_k07.b1 CHROMAT_FILE:
MSMg01no547_k07.b1 PHD_FILE: MSMg01no547_k07.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:29:19 2005
         (663 letters)



>mm_chr14_77860694_77861756
          Length = 1063

 Score = 1007 bits (521), Expect = 0.0
 Identities = 536/541 (99%)
 Strand = Plus / Minus

                                                                       
Query: 6   gaattcattatttgtgttggtcagagtcaaataaatttaaagaagacaaaaaggaaacaa 65
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 541 gaattcattatttgtgttggtcagagtcaaataaatttaaagaagacaaaaaggaaacaa 482

                                                                       
Query: 66  cttggttttaattatctcctatcttcccttcatgcatgcactcattcatacatgttacat 125
           |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 481 cttggttttaattatctcctatcttcccttcatgtatgcactcattcatacatgttacat 422

                                                                       
Query: 126 atatgccaggctctgtgtgtaatatctggctgagggacatggacaacagagcagattgca 185
           ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 atatgtcaggctctgtgtgtaatatctggctgagggacatggacaacagagcagattgca 362

                                                                       
Query: 186 cttcagggaagatgcacacagtaagtgtgtgtgcaggcaagtaggacggaccatgtgctc 245
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 cttcagggaagatgcacacagtaagtgtgtgtgcaggcaagtaggacggaccatgtgctc 302

                                                                       
Query: 246 ctggggaaaataaggatgtttcctttctgagggcccttcgagaggagatacactcttgtg 305
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 ctggggaaaataaggatgtttcctttctgagggcccttcgagaggagatacactcttgtg 242

                                                                       
Query: 306 ctggactttaagatgacttttgaagataagattagatttattttacacatgtaagtgctt 365
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 ctggactttaagatgacgtttgaagataagattagatttattttacacatgtaagtgctt 182

                                                                       
Query: 366 tgcctgcctgtacatctgtgtaccatgtgtatgactgttatcgacagaggtcaaaggagg 425
           |||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 181 tgcctgccggtacatctgtgtaccatgtgtatgactgttatcgacagagatcaaaggagg 122

                                                                       
Query: 426 gcactggacctgctgggagctggagttacagatgcttgtgaggcctttgggagcagaacc 485
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 gcactggacctgctgggagctggagttacagatgcttgtgaggcctttgggagcagaacc 62

                                                                       
Query: 486 aaggccctctgcaaggtccagtcctctgggatcagtctggagagattctgcgggagagtc 545
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61  aaggccctctgcaaggtccagtcctctgggatcagtctggagagattctgcgggagagtc 2

            
Query: 546 a 546
           |
Sbjct: 1   a 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 663
Length of database: 1063
Length adjustment: 10
Effective length of query: 653
Effective length of database: 1053
Effective search space:   687609
Effective search space used:   687609
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no547_k07.g1 MSMg01no547_k07.g1 CHROMAT_FILE:
MSMg01no547_k07.g1 PHD_FILE: MSMg01no547_k07.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:29:19 2005
         (651 letters)



>mm_chr14_77744397_77745447
          Length = 1051

 Score = 1236 bits (639), Expect = 0.0
 Identities = 648/651 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   ctatctcctattatctctggccttgtgtgctgccttaactctacggaatctggaaaaact 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ctatctcctattatctctggccttgtgtgctgccttaactctacggaatctggaaaaact 260

                                                                       
Query: 61  tttcgaaaacaaaaaaggagaaaatgacagccaaaatgaagccagacttgataacctgaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tttcgaaaacaaaaaaggagaaaatgacagccaaaatgaagccagacttgataacctgaa 320

                                                                       
Query: 121 tttcttgtgcatcattaacttaacaaagttgccttctaaggcatggcacacataggtatt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tttcttgtgcatcattaacttaacaaagttgccttctaaggcatggcacacataggtatt 380

                                                                       
Query: 181 gcacataaagctgtggccagaacatgccaaatgtcctcctgcagagagagagggaaccag 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gcacataaagctgtggccagaacatgccaaatgtcctcctgcagagagagagggaaccag 440

                                                                       
Query: 241 aacaagtacccagataaggcagaaggcacagatggataatgaccagaaagcagaaagaca 300
           ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 441 aacaagtacccagataaggcagaaggcacagatgggtaatgaccagaaagcagaaagaca 500

                                                                       
Query: 301 agctggctggatggtaccttttgggtggtcctttcaacaaggatgcctttctgaagaggt 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 agctggctggatggtaccttttgggtggtcctttcaacaaggatgcctttctgaagaggt 560

                                                                       
Query: 361 gacatttggccactgtgatcaccgtgaccatgtgccactatttggtattccactcattat 420
           |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 561 gacatttggccactgtgatcacagtgaccatgtgccactatttggtattccactcattat 620

                                                                       
Query: 421 catcattgtgaagaattgagttgctggagatagagctgctcagtggccaagcgtgcacat 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 catcattgtgaagaattgagttgctggagatagagctgctcagtggccaagcgtgcacat 680

                                                                       
Query: 481 ctgtagcatgtgctcggctctgagatccatctctagcacagtgtcatcaggcagcatgaa 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 ctgtagcatgtgctcggctctgagatccatctctagcacagtgtcatcaggcagcatgaa 740

                                                                       
Query: 541 cgtctttcctccctcgccttattttattggatatgtgttaagttggaaccatcttttgat 600
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 741 cgtctttcctccctcgccttattttattggatatgtgttaagttggaactatcttttgat 800

                                                              
Query: 601 tgagataagctttgttgagatttgcaggtcttaagcaaggccaacttgtct 651
           |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 801 tgagataagctttgttgagatttgcaggtcttaagcaaggccaacttgtct 851


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 38
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 651
Length of database: 1051
Length adjustment: 10
Effective length of query: 641
Effective length of database: 1041
Effective search space:   667281
Effective search space used:   667281
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


| Home | SequenceCutter | Blast | Download |