BAC Information

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BAC

Clone NameMSMg01-547L14
Chromosome14 (Build37)
Map Location 66,835,116 - 66,835,515
singlet/doubletsinglet
Overlap genePtk2b
Upstream geneFzd3, Fbxo16, Zfp395, Pnoc, Elp3, Gm600, Scara5, Pbk, Esco2, Ccdc25, Scara3, Clu, Gulo, Adam2, LOC100043675, Ephx2, Chrna2
Downstream geneLOC100043676, Trim35, Stmn4, Adra1a, ENSMUSG00000057913, LOC668366, Dpysl2, EG432870, Pnma2, LOC672614, Bnip3l, Ppp2r2a
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-547L14.T7 (MSMg01no547_l14.b1)MSMg01-547L14.TJ (MSMg01no547_l14.g1)
ACCAG612242AG612243
length734745
length of high quality
(start - end)		688 (39 - 726)413 (70 - 482)
definitionCHROMAT_FILE: MSMg01no547_l14.b1 PHD_FILE: MSMg01no547_l14.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:29:26 2005CHROMAT_FILE: MSMg01no547_l14.g1 PHD_FILE: MSMg01no547_l14.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:29:26 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCGAGGATCCGCGGAATTC
AACATAATTGGAGCATGGTAAAAAAGGCATCTTCAAGAAATACTTCTTTA
AATTTATTAGCCCTGCATAATGAGGTTGTAAGTTAAGAAATGTAAAACCT
TTGTCTTTTGACAATGCTAGCATTGCAGATGATATTCTTTAAAAGGTATA
GGCTGGTTTTCCTTCATGATTCTTGTTTTCATCTCTCTTATTGGAAGTAG
CAGGACTTGGCCTTATGATCCTTTTAATGTCATATCTATTATCTGTTCTT
TTGAGAAAAATCATCAGAAATTTTACAGATGTCAAAACAGAGTTACATAA
ATTCAAGCTCCAACATCTTTCCTAGCAGAAGTTGGTAGTCAATGACGCGT
CAGATCATCTTGAGAATGTTTGAAACCTAAAACAGGCCACAAATACAAGA
TTATTCATGTGCCAATGATGGGTAAGAGCTATATTTTTGGATGGCAATAT
AAGACAAGCACAACTTTCTGCTCTATGACTGATAAAGTGCCTCTTATAGA
TTAAAAAAAAAAAAAGGACAAGTAAGATTCTCTCAGAGGTGGATCAACCT
AAGACAGGGCATGAATGCTGAGATCCATGTACCAATGATAGGTAAGGTCC
ATACTTCTTGAGGGGATGCCTAAGACAGGCACAGTCTTTCTATGCCAATA
GCTGAGACAACTTTGGCTTCTATAGATAAAAGGG

AXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXAGAAGTTATTTGATGGGTGTCTGCAGGAAGC
ACCCCCAGGAGCGTAGAACAATGTGGCATTGAAGGAAAGACAGGCGAAAA
GGGTACTGTGCTGAGTACTGAATCTTGGACAAGCCCCCTTTCAATCCTCT
GGGAACTGGAGGGGACTGGGGAGCCCAGGATGGACCGACCACATCTCACT
CAGAGAAAGGGAGAGCTGGGAGCATGTCTACTCCACTTCATATGCTCAGT
GTTCTTGGCAGTTCTTGTCAGTTCTGCACAAGGGAGATGCCAGAAAGCCT
TTAGGCAAAGATGCAGAACAGGCAGCTGGGAGATGAGGGAGAATACTGAA
GTGGCAAGGCCTGAGGGGGCCCAGGAGGGATGATGGCAATGGTACATTAG
GATTGGGAAGATGGGGGGGGGGGTTACTTANNCCCTANATANCNTANTCC
TATTCTNGAGTACAAACAAGCAACTGCATATGCTCCATGAAGTGCTGGCC
TGCTGGCTTGAAGATCTGCTTGGCTGGTAGGCTTCAATTTGTATGTGGTA
AGTTGAACACTATGCTTTCATAAAAGTGTATTGTGAAACATGGATCTTTA
TGTGTAAAGTGGATTGACTTTTTATATATAACCCTATGGATCTTTCTTTA
TCATGTTCGGACTTATTCTTGATCTCCTTTAACTTTATTTTCCCA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no547_l14.g1 MSMg01no547_l14.g1 CHROMAT_FILE:
MSMg01no547_l14.g1 PHD_FILE: MSMg01no547_l14.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:29:26 2005
         (413 letters)



>mm_chr14_66834916_66835728
          Length = 813

 Score =  758 bits (392), Expect = 0.0
 Identities = 398/400 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   agaagttatttgatgggtgtctgcaggaagcacccccaggagcgtagaacaatgtggcat 60
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 agaagttatttgaggggtgtctgcaggaagcacccccaggagcgtagaacaatgtggcat 260

                                                                       
Query: 61  tgaaggaaagacaggcgaaaagggtactgtgctgagtactgaatcttggacaagccccct 120
           |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 261 tgaaggaaagacaggcgaaaaggggactgtgctgagtactgaatcttggacaagccccct 320

                                                                       
Query: 121 ttcaatcctctgggaactggaggggactggggagcccaggatggaccgaccacatctcac 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ttcaatcctctgggaactggaggggactggggagcccaggatggaccgaccacatctcac 380

                                                                       
Query: 181 tcagagaaagggagagctgggagcatgtctactccacttcatatgctcagtgttcttggc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tcagagaaagggagagctgggagcatgtctactccacttcatatgctcagtgttcttggc 440

                                                                       
Query: 241 agttcttgtcagttctgcacaagggagatgccagaaagcctttaggcaaagatgcagaac 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 agttcttgtcagttctgcacaagggagatgccagaaagcctttaggcaaagatgcagaac 500

                                                                       
Query: 301 aggcagctgggagatgagggagaatactgaagtggcaaggcctgagggggcccaggaggg 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 aggcagctgggagatgagggagaatactgaagtggcaaggcctgagggggcccaggaggg 560

                                                   
Query: 361 atgatggcaatggtacattaggattgggaagatggggggg 400
           ||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 atgatggcaatggtacattaggattgggaagatggggggg 600


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 413
Length of database: 813
Length adjustment: 9
Effective length of query: 404
Effective length of database: 804
Effective search space:   324816
Effective search space used:   324816
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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