BAC Information

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BAC

Clone NameMSMg01-548G04
Chromosome14 (Build37)
Map Location 23,611,393 - 23,611,777
singlet/doubletsinglet
Overlap gene1700112E06Rik
Upstream geneSamd8, Vdac2, Comtd1, Zfp503, EG665075, EG435392, LOC665068
Downstream geneKcnma1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-548G04.T7 (MSMg01no548_g04.b1)MSMg01-548G04.TJ (MSMg01no548_g04.g1)
ACCAG612744AG612745
length737804
length of high quality
(start - end)
389 (47 - 435)---
definitionCHROMAT_FILE: MSMg01no548_g04.b1 PHD_FILE: MSMg01no548_g04.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:30:17 2005CHROMAT_FILE: MSMg01no548_g04.g1 PHD_FILE: MSMg01no548_g04.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:30:17 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
ACTTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCG
GAATTCTCATTGTTGTCCAACTATTTCTACCGTTTGGGTTTCCTTTCATT
TTTCAATCCCATCCAACTCGATTGGTGTTATATTGTAGTCACAGAAAATT
TTACGTCACGTGGTAGTATAAGGAGGTGGATTACAAGTAGACCCTGAGCA
CTGTTGAGCTCAGCTGTGATGTGTTTGTTGTGCAAACATAAGGACCTGAG
TTCAATCCCTAGGGCTTCAGAAAAATAGCCATGCATGATGGGGCTGAGTT
GTAATCTCAGAATTGGGAGGGCAAAGCTGGATAGATCACTGGTGGCTCAG
TGGCTTGTTAGCCTAGCCTACTTGGTGAGCTCTAGGCCAGAAATAGAGAG
TCCATCTCAAAACCCAAAGTGGGAAATGACTCAGGGACATACCTAAGGTA
GACTTCTGGACATCGACACACAAAGGACACGCCCACATGTACATTCTAAG
GATGTAAAGAAGACTATATCTTCTCCCTATTTAAGAAGGTATTTGGACAC
ACTCTGGGTAACTGTGTAACTGTGATGTGGTGTTTACAATAGGACATGTT
GCAACCAGTGTTGGACTTGACATAGATGCCGTATCAGGATACTGAACGAA
TGCCTTGGCTTATCTCTCAGAAATGCCTCTTATCTGATGGTTATATAATG
GAAAAATCTATTTTTCTTGAATAAATAAATTTACTCN
TAAAATACTAATATTTAATACAAAACTTTTTATTTTGTTTTTTAGTTTTT
NTTNTTTTTTGTGGTNNANNTAATCCAATGAATAATGGGGTAAGTCCTGT
GCGGGCCGCCCTGGGGCCGCTCGGACATTTTTAGGGTGGACACCTATTAA
GAAAGGGATTCCGCCGGGAATTTCTTTTCACCTGGGGCCTACTTTAAAAA
GGCAAGAAAAAATGCCCCTTCTTGCTTAACCCACAGAAAGTGGCCAGGTA
ATGTCAGGAAAAACTTGTGTGGCCCTCTGGGGAAGAAATCCCAATTCTCC
CCCCCCCTTGGATTTGGGAACCCACTGTAGGAAAAAGTCACCTTGTTCTT
TTAAAAAACCCCCCAAAAGAAAATTTTGAAACTTGGAAAAATATTGGGAG
AAAAACTCTGGGAAAAAAAAAAAAAAAAAATATGGGGGGGCTTCCTCTTC
GCGGCCAAAAGAGGCCCCCCTATAGGTGTCTTTTTTTTTATAGGGGGGGG
CCCCGCCTGTATAAAAACGTGGGTGGACTCCTCCTTTGTGGAAAAAAAAA
AAAAAAGGGGGTTTTTTTCTTTTTTTTTCTCCCCCGCGTGGTTATTTTGA
TGAGGGGTGGAAAATATTTTTTTTTTTTTTTATTACCCACCCACTAAATG
TAAATTATGTATAATTATCTTTCTCTCCCCCCCGCGGGTGCTGTTGTTCC
GGAAAAATAAAATTTTATTTTTCTTCCTTCCTCCTCTCTGCAGGCCACAG
GTATCTTGAATAAAAAAAGAAAAAAAATTAAAATGTTCCTTCCTTCAAAA
GAAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no548_g04.b1 MSMg01no548_g04.b1 CHROMAT_FILE:
MSMg01no548_g04.b1 PHD_FILE: MSMg01no548_g04.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:30:17 2005
         (389 letters)



>mm_chr14_23611189_23611977
          Length = 789

 Score =  683 bits (353), Expect = 0.0
 Identities = 377/385 (97%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattctcattgttgtccaactatttctaccgtttgggtttcctttcatttttcaatccc 64
           ||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattctcattgttgtagaactatttctaccgtttgggtttcctttcatttttcaatccc 264

                                                                       
Query: 65  atccaactcgattggtgttatattgtagtcacagaaaattttacgtcacgtggtagtata 124
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 265 atccaactcgattggtgttatattgtagtcacagaaaattttacgtcacatggtagtata 324

                                                                       
Query: 125 aggaggtggattacaagtagaccctgagcactgttgagctcagctgtgatgtgtttgttg 184
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 aggaagtggattacaagtagaccctgagcactgttgagctcagctgtgatgtgtttgttg 384

                                                                       
Query: 185 tgcaaacataaggacctgagttcaatccctagggcttcagaaaaatagccatgcatgatg 244
           ||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||| |
Sbjct: 385 tgcaaacataaggacctgagttcaatccctagggcctcaggaaaatagccatgcatgacg 444

                                                                       
Query: 245 gggctgagttgtaatctcagaattgggagggcaaagctggatagatcactggtggctcag 304
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 gggctgagttgtaatcccagaattgggagggcaaagctggatagatcactggtggctcag 504

                                                                       
Query: 305 tggcttgttagcctagcctacttggtgagctctaggccagaaatagagagtccatctcaa 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 tggcttgttagcctagcctacttggtgagctctaggccagaaatagagagtccatctcaa 564

                                    
Query: 365 aacccaaagtgggaaatgactcagg 389
           |||||||||||||||||||||||||
Sbjct: 565 aacccaaagtgggaaatgactcagg 589


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 389
Length of database: 789
Length adjustment: 9
Effective length of query: 380
Effective length of database: 780
Effective search space:   296400
Effective search space used:   296400
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)