BAC Information

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BAC

Clone NameB6Ng01-001B22
Chromosome15 (Build37)
Map Location 68,198,910 - 68,335,008
singlet/doubletdoublet
Overlap genenone
Upstream geneZfat1, LOC100041000
Downstream geneEG665945, EG633752, Khdrbs3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-001B22.bB6Ng01-001B22.g
ACCDH839530DH839531
length1,1371,158
definitionDH839530|Mus musculus domesticus DNA, BAC clone: B6Ng01-001B22, 5' end.DH839531|Mus musculus domesticus DNA, BAC clone: B6Ng01-001B22, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(68,198,910 - 68,200,057)(68,333,825 - 68,335,008)
sequence
gaattcagtcagtaccaattcatgtatcaggaagggagcatttgttggtt
agtcccgtctccaacaaccttctgcagtagccagtgctctcctcattgtg
cagacagggacatctatgtgggtgcggggagcgactggaccacagtcatg
cttgattgtgggaaaggcaggattgattctggaaacaggtcatcatgtaa
gttgctgtgttactgtcctgctctgctgcagtgacagtggtgttcatgac
catgtccctattctccctttctcttagagaaatcccagtctcctgccagc
atgaagaaaaatgattgctttatacagggtgaatgtgtgcacgtcaagct
aaatggcttctctttggagtcatttatctgtaattgggttaaaattgtgg
ttttaaggccaggtatgggatgcatgcctttcatcccaactcttggcaga
cagaggtaggcaaatctctgtgagtttggggccagccagggttatgtaac
aggaccctatcttaataaataaagttgcaatgttttagaaaatagatgca
tctgaagaggatgtgaaggacccagctaattaactccccatcccttgact
tttttttcttccttcctttgcttttcttgttttgttttgtttttcccaac
ctctgtggagagcttttggggctgcttttagaaacttggcagaaatttga
caatggtccgggacatagaagtagccctcccgaaggcatttgactttggg
ctagaacaaagtagacctcaggcagggatttgactttggactaggactca
gaagtatgctcaaggcctcagcctcagcagcagcggtcgccatctgggtt
ccgggactccgcgggacctaggaaattagtctgaacaggttagagggtgc
gccagagaaccggacagcttctgggatgggcggaagcacagagccgctga
ggcagcagcctggcaggccgcagacaaccgggccaccatccgaccagaga
caggtgtccgcctggcttgggaggcgcttcagcctcagcagcagcggttg
ccatcttgtccggactcagcagacttagaaattagactgaacatgttaga
gggtgcgccaagaaacgacagcttctggacgggcaga
gaattcaccttgggggtgcattttcagcacaacctccggggttttcacat
aacctgagcagagatcacacaatgtataatcctctgggagggcatagaag
aagcccagggagttagggatcagcaggaagactgaggcaatgaagatgga
tcactgttgtctccaaaaaaattgacagccttccagtcctagccagccaa
ggagatgcaagaggaggccacaggtggtaggagctaggctcatccatgtg
acagataaaaacgatcttccacagaaaagcaaagaaaagctacttctaaa
ctcaatactggcatgtgattcttagctggcccttaaaatcacactggctg
gcttcctgctggtagcttttaaaacatttatttatttattcacatactta
cttttgttgcctttggtactgattttttaaccctacatcgaatattcccc
agcaacaaagggtgagattccagctccaacagcctttccttctctcttca
gaccttttgttttcaaaagaaaaacagtggctagctctgtccagcctgct
tggtgagatggggtgtttgccagctctatatatgcccactccttccccta
caggcctcacatcccaatccagacctgtttctttctcacttcttctgtcc
ctgtactgtgacagaaatggatttggctcactctgcattagaaaccactt
tcccttccggccctccacccggtcttcccggatcgatgggattagaaatg
gctgatttaattagtccagttgcagccttgctttattactttctcattta
caatgaaataatggggagcaagcaaaagggatttgtcattatctaaggac
tgggtgaggcaaaaaaggatgctattgccggaaccagctgcagccttacc
ttgaggcagaagagggaaattgctgcctttcattgatctcagatatctga
cagtttgtggaaaacaggaaagccatgccctgaccacaagtcatctagga
caaatagccttacttcggatcctatcatgacccatagactgtgtgggatg
tccctttgtgctactttctgcatgacaacaataaggttcagccttcattg
catcatatcctctgagtgtctcctaaatgttacagcctggctcctagctc
gagatggg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr15_68198910_68200057
seq2: B6Ng01-001B22.b_44_1180

seq1  GAATTCAGTCAGTACCAATTCATGTATCAGGAAGGGAGCATTTGTTGGTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGTCAGTACCAATTCATGTATCAGGAAGGGAGCATTTGTTGGTT  50

seq1  AGTCCCGTCTCCAACAACCTTCTGCAGTAGCCAGTGCTCTCCTCATTGTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCCCGTCTCCAACAACCTTCTGCAGTAGCCAGTGCTCTCCTCATTGTG  100

seq1  CAGACAGGGACATCTATGTGGGTGCGGGGAGCGACTGGACCACAGTCATG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGACAGGGACATCTATGTGGGTGCGGGGAGCGACTGGACCACAGTCATG  150

seq1  CTTGATTGTGGGAAAGGCAGGATTGATTCTGGAAACAGGTCATCATGTAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGATTGTGGGAAAGGCAGGATTGATTCTGGAAACAGGTCATCATGTAA  200

seq1  GTTGCTGTGTTACTGTCCTGCTCTGCTGCAGTGACAGTGGTGTTCATGAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGCTGTGTTACTGTCCTGCTCTGCTGCAGTGACAGTGGTGTTCATGAC  250

seq1  CATGTCCCTATTCTCCCTTTCTCTTAGAGAAATCCCAGTCTCCTGCCAGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGTCCCTATTCTCCCTTTCTCTTAGAGAAATCCCAGTCTCCTGCCAGC  300

seq1  ATGAAGAAAAATGATTGCTTTATACAGGGTGAATGTGTGCACGTCAAGCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAAGAAAAATGATTGCTTTATACAGGGTGAATGTGTGCACGTCAAGCT  350

seq1  AAATGGCTTCTCTTTGGAGTCATTTATCTGTAATTGGGTTAAAATTGTGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGGCTTCTCTTTGGAGTCATTTATCTGTAATTGGGTTAAAATTGTGG  400

seq1  TTTTAAGGCCAGGTATGGGATGCATGCCTTTCATCCCAACTCTTGGCAGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTAAGGCCAGGTATGGGATGCATGCCTTTCATCCCAACTCTTGGCAGA  450

seq1  CAGAGGTAGGCAAATCTCTGTGAGTTTGGGGCCAGCCAGGGTTATGTAAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGGTAGGCAAATCTCTGTGAGTTTGGGGCCAGCCAGGGTTATGTAAC  500

seq1  AGGACCCTATCTTAATAAATAAAGTTGCAATGTTTTAGAAAATAGATGCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGACCCTATCTTAATAAATAAAGTTGCAATGTTTTAGAAAATAGATGCA  550

seq1  TCTGAAGAGGATGTGAAGGACCCAGCTAATTAACTCCCCATCCCTTGACT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGAAGAGGATGTGAAGGACCCAGCTAATTAACTCCCCATCCCTTGACT  600

seq1  TTTTTTTCTTCCTTCCTTTGCTTTTCTTGTTTTGTTTTGTTTTTCCCAAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTTCTTCCTTCCTTTGCTTTTCTTGTTTTGTTTTGTTTTTCCCAAC  650

seq1  CTCTGTGGAGAGCTTTTGGGGCTGCTTTTAGAAACTTGGCAGAAATTTGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGTGGAGAGCTTTTGGGGCTGCTTTTAGAAACTTGGCAGAAATTTGA  700

seq1  CAATGGTCCGGGACATAGAAGTAGCCCTCCCGAAGGCATTTGACTTTGGG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATGGTCCGGGACATAGAAGTAGCCCTCCCGAAGGCATTTGACTTTGGG  750

seq1  CTAGAACAAAGTAGACCTCAGGCAGGGATTTGACTTTGGACTAGGACTCA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGAACAAAGTAGACCTCAGGCAGGGATTTGACTTTGGACTAGGACTCA  800

seq1  GAAGTATGCTCAAGGCCTCAGCCTCAGCAGCAGCGGTCGCCATCTGGGTT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGTATGCTCAAGGCCTCAGCCTCAGCAGCAGCGGTCGCCATCTGGGTT  850

seq1  CCGGGACTCCGCGGGACCTAGGAAATTAGTCTGAACAGGTTAGAGGGTGC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGGGACTCCGCGGGACCTAGGAAATTAGTCTGAACAGGTTAGAGGGTGC  900

seq1  GCCAGAGAACCGGACAGCTTCTGGGATGGGCGGAAGCACAGAGCCGCTGA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAGAGAACCGGACAGCTTCTGGGATGGGCGGAAGCACAGAGCCGCTGA  950

seq1  GGCAGCAGCCTGGGCAGGCCGCAGACAACC-GGCCACCATCCGGACCAGA  999
      ||||||||||| |||||||||||||||||| ||||||||||| |||||||
seq2  GGCAGCAGCCT-GGCAGGCCGCAGACAACCGGGCCACCATCC-GACCAGA  998

seq1  GGACAGGTGTCCGCCTGGCTTGGGAGGCGGCCTCAGCCTCAGCAGCAGCG  1049
       ||||||||||||||||||||||||||| || ||||||||||||||||||
seq2  -GACAGGTGTCCGCCTGGCTTGGGAGGC-GCTTCAGCCTCAGCAGCAGCG  1046

seq1  GTCGCCATCTTGGTTCCGGGACTCAGCAGAACTTAGGAAATTAGACTGAA  1099
      || |||||||||  ||| ||||||||||| ||||| ||||||||||||||
seq2  GTTGCCATCTTG--TCC-GGACTCAGCAG-ACTTA-GAAATTAGACTGAA  1091

seq1  CAGGTTAGAGGGTGCGCCAGAGAACCGGACAGCTTCTGGGACGGGCAGA  1148
      || |||||||||||||||| |||| | |||||||||| |||||||||||
seq2  CATGTTAGAGGGTGCGCCA-AGAAAC-GACAGCTTCT-GGACGGGCAGA  1137

seq1: chr15_68333825_68335008
seq2: B6Ng01-001B22.g_68_1225 (reverse)

seq1  CCCATCTAGACCTGAGGAGCCAGGCCCCTGGGTATCATTAAGGAGACACT  50
      ||||||| || || |||||||||||      ||| |||| ||||||||||
seq2  CCCATCTCGAGCT-AGGAGCCAGGC-----TGTAACATTTAGGAGACACT  44

seq1  CTTCAGAGAGGATATGAATGCACTGAGGCCTGAAACTTTATTGTTGGTCA  100
      |     |||||||||| ||||| ||| | ||| ||| |||||||| ||||
seq2  C-----AGAGGATATG-ATGCAATGAAGGCTG-AACCTTATTGTT-GTCA  86

seq1  TGCAGAAAGTAGCACAAAGGGAACATCCCACACAGGTCCTATGGGTCATG  150
      ||||||||||||||||||||| |||||||||||||   ||||||||||||
seq2  TGCAGAAAGTAGCACAAAGGG-ACATCCCACACAG--TCTATGGGTCATG  133

seq1  ATTAGGAATCCCGAGGTTAAGGGCTATTTGTCCTAGATGACTTTGTGGTC  200
      | |||||   |||| ||  | |||||||||||||||||||| ||||||||
seq2  A-TAGGA--TCCGAAGT--AAGGCTATTTGTCCTAGATGAC-TTGTGGTC  177

seq1  AGGGCAATGGCTTT-CTGTTTTCCACAAACTGTCAGATATCCTGAGATCA  249
      ||||| |||||||| ||||||||||||||||||||||||| |||||||||
seq2  AGGGC-ATGGCTTTCCTGTTTTCCACAAACTGTCAGATAT-CTGAGATCA  225

seq1  ATGAAAGGCAGCAATTTCCCTCTTCTGCCTCAAGGTAAAGGCTGCAGCTG  299
      |||||||||||||||||||||||||||||||||||| |||||||||||||
seq2  ATGAAAGGCAGCAATTTCCCTCTTCTGCCTCAAGGT-AAGGCTGCAGCTG  274

seq1  GTTCCGGCAATAGCATCCTTTTTTTGCCTCAACCAGTCCTTAGATAATGA  349
      |||||||||||||||||| |||||||||||| ||||||||||||||||||
seq2  GTTCCGGCAATAGCATCC-TTTTTTGCCTCACCCAGTCCTTAGATAATGA  323

seq1  CAAATCCCTTTTGCTTGCTCCCCATTATTTCATTGTAAATGAGAAAGTAA  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATCCCTTTTGCTTGCTCCCCATTATTTCATTGTAAATGAGAAAGTAA  373

seq1  TAAAGCAAGGCTGCAACTGGACTAATTAAATCAGCCATTTCTAATCCCAT  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAGCAAGGCTGCAACTGGACTAATTAAATCAGCCATTTCTAATCCCAT  423

seq1  CGATCCGGGAAGACCGGGTGGAGGGCCGGAAGGGAAAGTGGTTTCTAATG  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGATCCGGGAAGACCGGGTGGAGGGCCGGAAGGGAAAGTGGTTTCTAATG  473

seq1  CAGAGTGAGCCAAATCCATTTCTGTCACAGTACAGGGACAGAAGAAGTGA  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGTGAGCCAAATCCATTTCTGTCACAGTACAGGGACAGAAGAAGTGA  523

seq1  GAAAGAAACAGGTCTGGATTGGGATGTGAGGCCTGTAGGGGAAGGAGTGG  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGAAACAGGTCTGGATTGGGATGTGAGGCCTGTAGGGGAAGGAGTGG  573

seq1  GCATATATAGAGCTGGCAAACACCCCATCTCACCAAGCAGGCTGGACAGA  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATATATAGAGCTGGCAAACACCCCATCTCACCAAGCAGGCTGGACAGA  623

seq1  GCTAGCCACTGTTTTTCTTTTGAAAACAAAAGGTCTGAAGAGAGAAGGAA  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTAGCCACTGTTTTTCTTTTGAAAACAAAAGGTCTGAAGAGAGAAGGAA  673

seq1  AGGCTGTTGGAGCTGGAATCTCACCCTTTGTTGCTGGGGAATATTCGATG  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCTGTTGGAGCTGGAATCTCACCCTTTGTTGCTGGGGAATATTCGATG  723

seq1  TAGGGTTAAAAAATCAGTACCAAAGGCAACAAAAGTAAGTATGTGAATAA  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGGTTAAAAAATCAGTACCAAAGGCAACAAAAGTAAGTATGTGAATAA  773

seq1  ATAAATAAATGTTTTAAAAGCTACCAGCAGGAAGCCAGCCAGTGTGATTT  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAATAAATGTTTTAAAAGCTACCAGCAGGAAGCCAGCCAGTGTGATTT  823

seq1  TAAGGGCCAGCTAAGAATCACATGCCAGTATTGAGTTTAGAAGTAGCTTT  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGGGCCAGCTAAGAATCACATGCCAGTATTGAGTTTAGAAGTAGCTTT  873

seq1  TCTTTGCTTTTCTGTGGAAGATCGTTTTTATCTGTCACATGGATGAGCCT  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTGCTTTTCTGTGGAAGATCGTTTTTATCTGTCACATGGATGAGCCT  923

seq1  AGCTCCTACCACCTGTGGCCTCCTCTTGCATCTCCTTGGCTGGCTAGGAC  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTCCTACCACCTGTGGCCTCCTCTTGCATCTCCTTGGCTGGCTAGGAC  973

seq1  TGGAAGGCTGTCAATTTTTTTGGAGACAACAGTGATCCATCTTCATTGCC  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAAGGCTGTCAATTTTTTTGGAGACAACAGTGATCCATCTTCATTGCC  1023

seq1  TCAGTCTTCCTGCTGATCCCTAACTCCCTGGGCTTCTTCTATGCCCTCCC  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGTCTTCCTGCTGATCCCTAACTCCCTGGGCTTCTTCTATGCCCTCCC  1073

seq1  AGAGGATTATACATTGTGTGATCTCTGCTCAGGTTATGTGAAAACCCCGG  1149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGGATTATACATTGTGTGATCTCTGCTCAGGTTATGTGAAAACCCCGG  1123

seq1  AGGTTGTGCTGAAAATGCACCCCCAAGGTGAATTC  1184
      |||||||||||||||||||||||||||||||||||
seq2  AGGTTGTGCTGAAAATGCACCCCCAAGGTGAATTC  1158