BAC Information

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BAC

Clone NameB6Ng01-001J10
Chromosome15 (Build37)
Map Location 47,343,318 - 47,476,235
singlet/doubletdoublet
Overlap geneLOC100039493, Csmd3
Upstream geneLOC100039438, LOC665130, LOC100039485
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-001J10.bB6Ng01-001J10.g
ACCDH839867DH839868
length1,1661,102
definitionDH839867|Mus musculus domesticus DNA, BAC clone: B6Ng01-001J10, 5' end.DH839868|Mus musculus domesticus DNA, BAC clone: B6Ng01-001J10, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(47,475,054 - 47,476,235)(47,343,318 - 47,344,433)
sequence
gaattctttattgatttcttaattttcaatttaatatgataaatttcatt
tttctaaaagtaataattttctccaaaattttaatgtgattaacaaaaat
aactcaaatgggatctttattcaatctatatttagcacaatttttaggag
ttattatgatctccaaaaattactttaatttatttgtgtttccatctaca
cagatatcagactattatgccaaaagttctgggatttctggagtatttgg
tttatttgactaaattcacttctgaaatgaaggtttctttaaaattcaaa
gatttatacctaggtaatttatattattcctaaagtacctcttatctttt
tcttttctttagtggtgaactgttctgatcctggaattccagccaattcc
aaaagagaaagcaaaatagaacatggaaattttacctatggcactgtggt
attctatgactgcaacccaggctattttttatttggctcttcagttttga
tatgtcagccaaatggacaatgggacaaacctttaccagaatgtatcagt
aagtagataatatgaattgttcctacaaaaatatgtcatggaaacaacat
tcatgtttattgccatatctcaaactatacacaggaagaaattaccttga
cttaattgatcagtttcaagatcacatattcacatatttcattaattcat
tgacttaattgtttttcagtaatatcactttactttttaaaatgtaaaca
ttcttctattatagctataatactatggctattcctagagatgatggaaa
ggacatctacttctcccagataaagaatccacaaatcatggcaagaaccc
atggggttatgtacaagaagttgaatgaaaggttaaagcaagaatgacta
atagacaggtggttcactctaagtccaccatgcgtgtcagttcaagaaag
ctaaaacccagagtgtactgcacacttacttaagcttagacattataggc
tgtcactttagcagcttagatgtaggacctcttatagttctctgcatctt
tcagtgcttgcctgattgtgacctcttatctcttgacgtgtctcttgcag
tcttacctgctctattactcgggaagaggggaggtgttaagatctggtct
atttcagttttgattc
gaattctctggtgttagatgttctagctgtctctgcctggagcttgttac
tcctgtgattctgttagcctctgtcagcactcctgggagtccatctctct
cctgagtctcagtggtcagagccctctctgcaggcaagctttcctgtttc
gagaaaggtgcctagaggtctggttctcagctctgcctcctggctgagga
tgaaggaccaaagggagctctgttgcttctctggcccaagtgctttcctg
catggactggtctctgagagacctgggatacaagatggcattctcatctg
agacctgtggtcagagccctctctggaggctgactgtcctcagtgatcct
taaatcctgggtgtgctttggcacctgcagcatggaaagtaccatgggga
ccttggaaccatctgctgagttttcactcaaggtgaatgaaccccagatg
ctggctgggtgggtttcctgtgtccctgttcctgcttgcacaggccactc
ccagtgttttggaacagatgttccattccactcaccattgatcccaagat
cctgggtttgctagggtgcctgtggtgtggaaagtcctcaggggacggtg
gaaccatccgcagagtttgcacccaaggtggcatgtggctggtgcacact
gtaacctgtttggtaattttaagtagtaaaaactagcttagagttgggca
gtggtagcagctcatgcctttaatcccagaacttgggaggcagaggcagg
tggatttctgagttcaaggccagcctggtctacagagtgagttccaggtc
agccagagctatacacagaaactctgtctcaaaaataaataaataataaa
taaaataaaataaaatttaaaaactagtttagaattattttgtaatcttt
gaaaatcatgagaaaagtaaaaggatctcataagaggttatatgtatgta
cagacagtcatatgaaactaataaaacatgttagctattatacaacaaat
ataaaatgatcatttggtatgaaatgcagtacattatattgtgaaaaaca
aatttcagaaagtgacatatttgatcttaaatgccattaagaaattaata
at
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr15_47475054_47476235
seq2: B6Ng01-001J10.b_46_1211 (reverse)

seq1  GAATCAAAAACTGAAAATGACCAGATTCTATACACCT-CCCTCTTCCCGA  49
      ||||| ||||||||||  ||||||| |||  |||||| ||||||||||||
seq2  GAATC-AAAACTGAAATAGACCAGA-TCTTAACACCTCCCCTCTTCCCGA  48

seq1  GTAAATAGGAGCAGTTAAAGACTGCCAAGAGACACTGTCAAAGAGATAAA  99
      || |||| |||||| | ||||||| |||||||||| ||| ||||||| ||
seq2  GT-AATA-GAGCAGGT-AAGACTG-CAAGAGACAC-GTC-AAGAGAT-AA  91

seq1  GAGGTTCAC-ATCAGCCAAGCAACTGAAAGATGCAGAGAACTATAAGAGG  148
      |||| |||| ||||| ||||| ||||||||||||||||||||||||||||
seq2  GAGG-TCACAATCAGGCAAGC-ACTGAAAGATGCAGAGAACTATAAGAGG  139

seq1  TTCCTACCATCTAAGCTGCCTAAAAGTGACAGCCTATAATTGTCTAAGCT  198
       ||||| ||||||||||||   ||||||||||||||||| ||||||||||
seq2  -TCCTA-CATCTAAGCTGC--TAAAGTGACAGCCTATAA-TGTCTAAGCT  184

seq1  TAAGTAAGTTGTGCAGTACACTCTGGGTTTTTAGCTTTCTTGAACTGACA  248
      |||||||| |||||||||||||||||| ||||||||||||||||||||||
seq2  TAAGTAAG-TGTGCAGTACACTCTGGG-TTTTAGCTTTCTTGAACTGACA  232

seq1  CGCATGGTGGACTTAGAGTGAACCACCTGTCTATTAGTCATTCTTGCTTT  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCATGGTGGACTTAGAGTGAACCACCTGTCTATTAGTCATTCTTGCTTT  282

seq1  AACCTTTCATTCAACTTCTTGTACATAACCCCATGGGTTCTTGCCATGAT  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCTTTCATTCAACTTCTTGTACATAACCCCATGGGTTCTTGCCATGAT  332

seq1  TTGTGGATTCTTTATCTGGGAGAAGTAGATGTCCTTTCCATCATCTCTAG  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTGGATTCTTTATCTGGGAGAAGTAGATGTCCTTTCCATCATCTCTAG  382

seq1  GAATAGCCATAGTATTATAGCTATAATAGAAGAATGTTTACATTTTAAAA  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATAGCCATAGTATTATAGCTATAATAGAAGAATGTTTACATTTTAAAA  432

seq1  AGTAAAGTGATATTACTGAAAAACAATTAAGTCAATGAATTAATGAAATA  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAAAGTGATATTACTGAAAAACAATTAAGTCAATGAATTAATGAAATA  482

seq1  TGTGAATATGTGATCTTGAAACTGATCAATTAAGTCAAGGTAATTTCTTC  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGAATATGTGATCTTGAAACTGATCAATTAAGTCAAGGTAATTTCTTC  532

seq1  CTGTGTATAGTTTGAGATATGGCAATAAACATGAATGTTGTTTCCATGAC  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGTATAGTTTGAGATATGGCAATAAACATGAATGTTGTTTCCATGAC  582

seq1  ATATTTTTGTAGGAACAATTCATATTATCTACTTACTGATACATTCTGGT  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTTTTGTAGGAACAATTCATATTATCTACTTACTGATACATTCTGGT  632

seq1  AAAGGTTTGTCCCATTGTCCATTTGGCTGACATATCAAAACTGAAGAGCC  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGTTTGTCCCATTGTCCATTTGGCTGACATATCAAAACTGAAGAGCC  682

seq1  AAATAAAAAATAGCCTGGGTTGCAGTCATAGAATACCACAGTGCCATAGG  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAAAAAATAGCCTGGGTTGCAGTCATAGAATACCACAGTGCCATAGG  732

seq1  TAAAATTTCCATGTTCTATTTTGCTTTCTCTTTTGGAATTGGCTGGAATT  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAATTTCCATGTTCTATTTTGCTTTCTCTTTTGGAATTGGCTGGAATT  782

seq1  CCAGGATCAGAACAGTTCACCACTAAAGAAAAGAAAAAGATAAGAGGTAC  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGGATCAGAACAGTTCACCACTAAAGAAAAGAAAAAGATAAGAGGTAC  832

seq1  TTTAGGAATAATATAAATTACCTAGGTATAAATCTTTGAATTTTAAAGAA  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAGGAATAATATAAATTACCTAGGTATAAATCTTTGAATTTTAAAGAA  882

seq1  ACCTTCATTTCAGAAGTGAATTTAGTCAAATAAACCAAATACTCCAGAAA  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTTCATTTCAGAAGTGAATTTAGTCAAATAAACCAAATACTCCAGAAA  932

seq1  TCCCAGAACTTTTGGCATAATAGTCTGATATCTGTGTAGATGGAAACACA  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCAGAACTTTTGGCATAATAGTCTGATATCTGTGTAGATGGAAACACA  982

seq1  AATAAATTAAAGTAATTTTTGGAGATCATAATAACTCCTAAAAATTGTGC  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAAATTAAAGTAATTTTTGGAGATCATAATAACTCCTAAAAATTGTGC  1032

seq1  TAAATATAGATTGAATAAAGATCCCATTTGAGTTATTTTTGTTAATCACA  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATATAGATTGAATAAAGATCCCATTTGAGTTATTTTTGTTAATCACA  1082

seq1  TTAAAATTTTGGAGAAAATTATTACTTTTAGAAAAATGAAATTTATCATA  1148
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAAATTTTGGAGAAAATTATTACTTTTAGAAAAATGAAATTTATCATA  1132

seq1  TTAAATTGAAAATTAAGAAATCAATAAAGAATTC  1182
      ||||||||||||||||||||||||||||||||||
seq2  TTAAATTGAAAATTAAGAAATCAATAAAGAATTC  1166

seq1: chr15_47343318_47344433
seq2: B6Ng01-001J10.g_69_1170

seq1  GAATTCTCTGGTGTTAGATGTTCTAGCTGTCTCTGCCTGGAGCTTGTTAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCTGGTGTTAGATGTTCTAGCTGTCTCTGCCTGGAGCTTGTTAC  50

seq1  TCCTGTGATTCTGTTAGCCTCTGTCAGCACTCCTGGGAGTCCATCTCTCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGTGATTCTGTTAGCCTCTGTCAGCACTCCTGGGAGTCCATCTCTCT  100

seq1  CCTGAGTCTCAGTGGTCAGAGCCCTCTCTGCAGGCAAGCTTTCCTGTTTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGAGTCTCAGTGGTCAGAGCCCTCTCTGCAGGCAAGCTTTCCTGTTTC  150

seq1  GAGAAAGGTGCCTAGAGGTCTGGTTCTCAGCTCTGCCTCCTGGCTGAGGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAAAGGTGCCTAGAGGTCTGGTTCTCAGCTCTGCCTCCTGGCTGAGGA  200

seq1  TGAAGGACCAAAGGGAGCTCTGTTGCTTCTCTGGCCCAAGTGCTTTCCTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAGGACCAAAGGGAGCTCTGTTGCTTCTCTGGCCCAAGTGCTTTCCTG  250

seq1  CATGGACTGGTCTCTGAGAGACCTGGGATACAAGATGGCATTCTCATCTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGGACTGGTCTCTGAGAGACCTGGGATACAAGATGGCATTCTCATCTG  300

seq1  AGACCTGTGGTCAGAGCCCTCTCTGGAGGCTGACTGTCCTCAGTGATCCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACCTGTGGTCAGAGCCCTCTCTGGAGGCTGACTGTCCTCAGTGATCCT  350

seq1  TAAATCCTGGGTGTGCTTTGGCACCTGCAGCATGGAAAGTACCATGGGGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATCCTGGGTGTGCTTTGGCACCTGCAGCATGGAAAGTACCATGGGGA  400

seq1  CCTTGGAACCATCTGCTGAGTTTTCACTCAAGGTGAATGAACCCCAGATG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTGGAACCATCTGCTGAGTTTTCACTCAAGGTGAATGAACCCCAGATG  450

seq1  CTGGCTGGGTGGGTTTCCTGTGTCCCTGTTCCTGCTTGCACAGGCCACTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGCTGGGTGGGTTTCCTGTGTCCCTGTTCCTGCTTGCACAGGCCACTC  500

seq1  CCAGTGTTTTGGAACAGATGTTCCATTCCACTCACCATTGATCCCAAGAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGTGTTTTGGAACAGATGTTCCATTCCACTCACCATTGATCCCAAGAT  550

seq1  CCTGGGTTTGCTAGGGTGCCTGTGGTGTGGAAAGTCCTCAGGGGACGGTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGGGTTTGCTAGGGTGCCTGTGGTGTGGAAAGTCCTCAGGGGACGGTG  600

seq1  GAACCATCCGCAGAGTTTGCACCCAAGGTGGCATGTGGCTGGTGCACACT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACCATCCGCAGAGTTTGCACCCAAGGTGGCATGTGGCTGGTGCACACT  650

seq1  GTAACCTGTTTGGTAATTTTAAGTAGTAAAAACTAGCTTAGAGTTGGGCA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAACCTGTTTGGTAATTTTAAGTAGTAAAAACTAGCTTAGAGTTGGGCA  700

seq1  GTGGTAGCAGCTCATGCCTTTAATCCCAGAACTTGGGAGGCAGAGGCAGG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGTAGCAGCTCATGCCTTTAATCCCAGAACTTGGGAGGCAGAGGCAGG  750

seq1  TGGATTTCTGAGTTCAAGGCCAGCCTGGTCTACAGAGTGAGTTCCAGGTC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGATTTCTGAGTTCAAGGCCAGCCTGGTCTACAGAGTGAGTTCCAGGTC  800

seq1  AGCCAGAGCTATACACAGAAACCCTGTCTCAAAAAATAAATAAATAAATA  850
      |||||||||||||||||||||| ||||||| |||||||||||||| ||||
seq2  AGCCAGAGCTATACACAGAAACTCTGTCTC-AAAAATAAATAAAT-AATA  848

seq1  AATAAAATAAAATAAAATTTAAAAACTAGTTTAGAATTATTTTGTAATCT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAAAATAAAATAAAATTTAAAAACTAGTTTAGAATTATTTTGTAATCT  898

seq1  TTGAAAATCATGAGAAAAGTAAAAGGATCTCAATAAGAGGTTATATGTAT  950
      ||||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  TTGAAAATCATGAGAAAAGTAAAAGGATCTC-ATAAGAGGTTATATGTAT  947

seq1  GTACAAGACAGTCAATATGAAAACTAATAAAAACATGTTAGCATATATAC  1000
      |||| |||||||| ||||| |||||||| |||||||||||||   |||||
seq2  GTAC-AGACAGTC-ATATG-AAACTAAT-AAAACATGTTAGCTATTATAC  993

seq1  AACAAAATATAAAATGATCATTTGGTATGATATGCAGGTACA-TATATGG  1049
      ||| |||||||||||||||||||||||||| ||||| ||||| ||||| |
seq2  AAC-AAATATAAAATGATCATTTGGTATGAAATGCA-GTACATTATATTG  1041

seq1  TGAAAAACAAATTCCAGAAAAGTGACCAATATTTGATCTAAAATGCAATT  1099
      ||||||||||||| ||| ||||||||  ||||||||||| |||||| |||
seq2  TGAAAAACAAATTTCAG-AAAGTGAC--ATATTTGATCTTAAATGCCATT  1088

seq1  AAAGAAATTTAAATAAT  1116
       ||||||||  ||||||
seq2  -AAGAAATT--AATAAT  1102