BAC Information

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BAC

Clone NameB6Ng01-002M22
Chromosome15 (Build37)
Map Location 27,957,246 - 28,090,141
singlet/doubletdoublet
Overlap geneLOC667126
Upstream geneAnk, BC087945, LOC100040622, BC052328, Trio
Downstream geneDnahc5, EG382974, LOC100040675, LOC100040689, LOC100040702, LOC667153
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-002M22.bB6Ng01-002M22.g
ACCDH840720DH840721
length9151,139
definitionDH840720|Mus musculus domesticus DNA, BAC clone: B6Ng01-002M22, 5' end.DH840721|Mus musculus domesticus DNA, BAC clone: B6Ng01-002M22, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(28,089,229 - 28,090,141)(27,957,246 - 27,958,219)
sequence
gaattcagacctcagtacccatggaaagctgaagtgcagaggctcacacc
cataaacccaaacccagcagcagcaggaagaggcagcaagagcctggagg
ctctcagacccgctggccgacctgaaccaccgctccttgagaaacccagt
cacaaaatataagttagagactgatagaagaaagacctccctccatggca
gccaatgcatgtgcatgcaaagtaaatctgcacacacacacatacacaca
cacacacagccagtacacatacacacaaagtaaacttccatagagaaaga
ggtgggggagggcaggctctggccaatatacaaacatgcaaagtaaatct
gcacacacacacttgtgtgcatgcacacgcatgtatgtgcacacacacat
acacacacacacacacagccagtacacatacacacaaagtaaacttccat
agagaaagaggtgggggagggcaggctctggccaatatacaaacatgcaa
agtaaatctatgcgtgtgcacacacagggggctgggagggagagaagaag
agacagggagagagagaaagagacagaaagacagactatggccaatactc
acatgcaaattaaaactacagaaacaccacaaagagacagtctctggctg
tgcaaacatgcgcatgcaaagtaatcctacttgctgtacacacacacaca
cacacagagagagagagagagagagagagagagagagagagagagagaga
gaaaggcaatctatatgaaggaaaagaggaaagaggcaaagaaatggagg
aaggagagagaaagggaaagaggaaaaataaaatgacaaaagcaaaatgg
gaaggaaaggacagagtgaaggagggaaaaagagagggagagatggagat
aaggaaagggacaga
gaattcaggctctttgggaaaatgggtgattctggtagtggggcaggaag
tatttaacatgagcaccctgttgtgccagaaggtaaggaaatgacttccc
aagggggggggggggaagcagcacagaaaaagattacccaggacacaaag
gaaacagtcgaaagagctcttcatggcccaagccagaacaatttcagaaa
gacaacatagcactgtttgattacaagcaaaaaaaataaataaatatttt
tgagtccatactgatgtaaaggaataagcaaatggggtagaagtgacaaa
ggcagaagtacaagtaacttaggtagagattgtcccgagtgagacagagc
agaactcccctctcgcagggtacaggctgcacactaccttccaaagagaa
caaaactggtaaggaactttctaacagagaaaccattactctgccccagc
ccgttgatcaaggtgaacttaagaatcagtaagtcaccttgacactgtgt
tctagatataataaaagtggcagtgttcctccctgtgcctcccctccaaa
actccaagctccaaatgaagataacagcatcctatgaatgaggcacttcc
tataaattacctcaccagcactctcccagactttcaaggtcagcaaaaat
aagaaaaggcaaacagatagttgtagaatgctgcgagaaccatgggatgg
tgttagaactcagtgcagtgtggtggtttgctcgtgttgttttgttctgt
gacaggttttccatccatggcccaagctggccttgaactctccattctct
tacatgggcctcccaagtacgttttactagatgtgtaagtacaaacaaat
cagttgtgtgccaccacatttggctcagtgtaggtggttttgatgggtct
caaaaggactcctgagatttaaactggagtaaatctgaatagcgtgtggg
ggtattagtcaatacaccaaattccatagtagcgagaaactagaactggg
gttcatgggagcttcttctccacaacttcttagtagaggtctttctcatt
tagattaaaagtattttaaagctaactttttaatctgaatgagcagctct
ttacaagaagtagttcaggtcagcaaggtcccaatctca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr15_28089229_28090141
seq2: B6Ng01-002M22.b_49_963 (reverse)

seq1  TCTGTCCCCTTCCTTCTCTCCCTCTCTCCCTCTC-TTCTCCCTCCTTCAC  49
      |||||||| |||||| ||||| |||||||||||| || ||||||||||||
seq2  TCTGTCCCTTTCCTTATCTCCATCTCTCCCTCTCTTTTTCCCTCCTTCAC  50

seq1  TCTGTCCTTTCCTTCCCATTTTGCTTTTGTCATTTTATTTTTCCTCTTTC  99
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTCCTTTCCTTCCCATTTTGCTTTTGTCATTTTATTTTTCCTCTTTC  100

seq1  CCTTTCTCTCTCCTTCCTCCATTTCTTTGCCTCTTTCCTCTTTTCCTTCA  149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTCTCTCTCCTTCCTCCATTTCTTTGCCTCTTTCCTCTTTTCCTTCA  150

seq1  TATAGATTGCC-TTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCT  198
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  TATAGATTGCCTTTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCT  200

seq1  CTCTCTCTCTGTGTGTGTGTGTGTGTGTACAGCAAGTAGGATTACTTTGC  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCTCTCTGTGTGTGTGTGTGTGTGTACAGCAAGTAGGATTACTTTGC  250

seq1  ATGCGCATGTTTGCACAGCCAGAGACTGTCTCTTTGTGGTGTTTCTGTAG  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCGCATGTTTGCACAGCCAGAGACTGTCTCTTTGTGGTGTTTCTGTAG  300

seq1  TTTTAATTTGCATGTGAGTATTGGCCATAGTCTGTCTTTCTGTCTCTTTC  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTAATTTGCATGTGAGTATTGGCCATAGTCTGTCTTTCTGTCTCTTTC  350

seq1  TCTCTCTCCCTGTCTCTTCTTCTCTCCCTCCCAGCCCCCTGTGTGTGCAC  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTCTCCCTGTCTCTTCTTCTCTCCCTCCCAGCCCCCTGTGTGTGCAC  400

seq1  ACGCATAGATTTACTTTGCATGTTTGTATATTGGCCAGAGCCTGCCCTCC  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGCATAGATTTACTTTGCATGTTTGTATATTGGCCAGAGCCTGCCCTCC  450

seq1  CCCACCTCTTTCTCTATGGAAGTTTACTTTGTGTGTATGTGTACTGGCTG  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCACCTCTTTCTCTATGGAAGTTTACTTTGTGTGTATGTGTACTGGCTG  500

seq1  TGTGTGTGTGTGTGTATGTGTGTGTGCACATACATGCGTGTGCATGCACA  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTGTGTGTGTGTATGTGTGTGTGCACATACATGCGTGTGCATGCACA  550

seq1  CAAGTGTGTGTGTGCAGATTTACTTTGCATGTTTGTATATTGGCCAGAGC  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGTGTGTGTGTGCAGATTTACTTTGCATGTTTGTATATTGGCCAGAGC  600

seq1  CTGCCCTCCCCCACCTCTTTCTCTATGGAAGTTTACTTTGTGTGTATGTG  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCCCTCCCCCACCTCTTTCTCTATGGAAGTTTACTTTGTGTGTATGTG  650

seq1  TACTGGCTGTGTGTGTGTGTGTATGTGTGTGTGTGCAGATTTACTTTGCA  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTGGCTGTGTGTGTGTGTGTATGTGTGTGTGTGCAGATTTACTTTGCA  700

seq1  TGCACATGCATTGGCTGCCATGGAGGGAGGTCTTTCTTCTATCAGTCTCT  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCACATGCATTGGCTGCCATGGAGGGAGGTCTTTCTTCTATCAGTCTCT  750

seq1  AACTTATATTTTGTGACTGGGTTTCTCAAGGAGCGGTGGTTCAGGTCGGC  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTTATATTTTGTGACTGGGTTTCTCAAGGAGCGGTGGTTCAGGTCGGC  800

seq1  CAGCGGGTCTGAGAGCCTCCAGGCTCTTGCTGCCTCTTCCTGCTGCTGCT  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCGGGTCTGAGAGCCTCCAGGCTCTTGCTGCCTCTTCCTGCTGCTGCT  850

seq1  GGGTTTGGGTTTATGGGTGTGAGCCTCTGCACTTCAGCTTTCCATGGGTA  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTTTGGGTTTATGGGTGTGAGCCTCTGCACTTCAGCTTTCCATGGGTA  900

seq1  CTGAGGTCTGAATTC  913
      |||||||||||||||
seq2  CTGAGGTCTGAATTC  915

seq1: chr15_27957246_27958219
seq2: B6Ng01-002M22.g_231_1207

seq1  AGAGCTCTTCATGGCCCAAGCCAGAACAATTTCAGAAAGACAACATAGCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGCTCTTCATGGCCCAAGCCAGAACAATTTCAGAAAGACAACATAGCA  50

seq1  CTGTTTGATTACAAGCAAAAAAAATAAATAAATATTTTTGAGTCCATACT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTTTGATTACAAGCAAAAAAAATAAATAAATATTTTTGAGTCCATACT  100

seq1  GATGTAAAGGAATAAGCAAATGGGGTAGAAGTGACAAAGGCAGAAGTACA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGTAAAGGAATAAGCAAATGGGGTAGAAGTGACAAAGGCAGAAGTACA  150

seq1  AGTAACTTAGGTAGAGATTGTCCCGAGTGAGACAGAGCAGAACTCCCCTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAACTTAGGTAGAGATTGTCCCGAGTGAGACAGAGCAGAACTCCCCTC  200

seq1  TCGCAGGGTACAGGCTGCACACTACCTTCCAAAGAGAACAAAACTGGTAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGCAGGGTACAGGCTGCACACTACCTTCCAAAGAGAACAAAACTGGTAA  250

seq1  GGAACTTTCTAACAGAGAAACCATTACTCTGCCCCAGCCCGTTGATCAAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAACTTTCTAACAGAGAAACCATTACTCTGCCCCAGCCCGTTGATCAAG  300

seq1  GTGAACTTAAGAATCAGTAAGTCACCTTGACACTGTGTTCTAGATATAAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAACTTAAGAATCAGTAAGTCACCTTGACACTGTGTTCTAGATATAAT  350

seq1  AAAAGTGGCAGTGTTCCTCCCTGTGCCTCCCCTCCAAAACTCCAAGCTCC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGTGGCAGTGTTCCTCCCTGTGCCTCCCCTCCAAAACTCCAAGCTCC  400

seq1  AAATGAAGATAACAGCATCCTATGAATGAGGCACTTCCTATAAATTACCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGAAGATAACAGCATCCTATGAATGAGGCACTTCCTATAAATTACCT  450

seq1  CACCAGCACTCTCCCAGACTTTCAAGGTCAGCAAAAATAAGAAAAGGCAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCAGCACTCTCCCAGACTTTCAAGGTCAGCAAAAATAAGAAAAGGCAA  500

seq1  ACAGATAGTTGTAGAATGCTGCGAGAACCATGGGATGGTGTTAGAACTCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGATAGTTGTAGAATGCTGCGAGAACCATGGGATGGTGTTAGAACTCA  550

seq1  GTGCAGTGTGGTGGTTTGCTCGTGTTGTTTTGTTCTGTGACAGGTTTTCC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCAGTGTGGTGGTTTGCTCGTGTTGTTTTGTTCTGTGACAGGTTTTCC  600

seq1  ATCCATGGCCCAAGCTGGCCTTGAACTCTCCATTCTCTTACATGGGCCTC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCATGGCCCAAGCTGGCCTTGAACTCTCCATTCTCTTACATGGGCCTC  650

seq1  CCAAGTACG-TTTACTAGATGTGTAAGTACAAACAAATCAGTTGTGTGCC  699
      ||||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  CCAAGTACGTTTTACTAGATGTGTAAGTACAAACAAATCAGTTGTGTGCC  700

seq1  ACCACATTTGGCTCAGTGTA-GTGGTCTTGATGGGTCTCAAAAGAACTCC  748
      |||||||||||||||||||| ||||| ||||||||||||||||| |||||
seq2  ACCACATTTGGCTCAGTGTAGGTGGTTTTGATGGGTCTCAAAAGGACTCC  750

seq1  TGAGATTTAAACT-GAGTAAATCTGAATAGCGTGTTGGGGTATTAGTCAA  797
      ||||||||||||| ||||||||||||||||||||| ||||||||||||||
seq2  TGAGATTTAAACTGGAGTAAATCTGAATAGCGTGTGGGGGTATTAGTCAA  800

seq1  TAACACCAAA-TCCATAGTAAGCGAGAAACTAGACCTGGGGTTCATGGGA  846
      | |||||||| |||||||| |||||||||||||| |||||||||||||||
seq2  T-ACACCAAATTCCATAGT-AGCGAGAAACTAGAACTGGGGTTCATGGGA  848

seq1  GCT--CTCTCCACAACTTCTTAGTAAATGTCTATCTCATTTTAAGATTAA  894
      |||   ||||||||||||||||||| | |||| ||||||||  ||||| |
seq2  GCTTCTTCTCCACAACTTCTTAGTAGAGGTCTTTCTCATTT--AGATT-A  895

seq1  AAAGTATATTTAAAGCTTAC-TTTTAATCAG-ATGAGCAGCCTCTTACAA  942
      ||||||| ||||||||| || |||||||| | |||||||||   ||||||
seq2  AAAGTAT-TTTAAAGCTAACTTTTTAATCTGAATGAGCAGCTCTTTACAA  944

seq1  -AAGTAATTCAAGTCAGCAAGTCCACAATCTCA  974
       ||||| |||| |||||||||  | ||||||||
seq2  GAAGTAGTTCAGGTCAGCAAGGTCCCAATCTCA  977