BAC Information

Click to search

BAC

Clone NameB6Ng01-003J17
Chromosome15 (Build37)
Map Location 99,703,995 - 99,834,828
singlet/doubletdoublet
Overlap geneLOC100042918, 1700030F18Rik, Gm920, D330037H05Rik
Upstream geneRhebl1, Dhh, Lmbr1l, Tuba1b, Tuba1a, EG668092, Tuba1c, Prph1, Troap, C1ql4, 2810451A06Rik, Spats2, Kcnh3, Mcrs1, EG545136, Prpf40b, Fmnl3, Tegt, C230021P08Rik, 4930556P03Rik, Faim2, LOC545137, Aqp2, Aqp5, Aqp6, Racgap1, LOC100043473, Accn2, Smarcd1, Gpd1, 2310016M24Rik, Lass5, Lima1, LOC100043481
Downstream gene4930478M13Rik, Dip2b, Atf1, 4930478A21Rik, EG432981, Mettl7a, ENSMUSG00000058057, LOC554292, Ubie, Yghl1-4, Slc11a2, EG432982, Letmd1, BC035295, Tcfcp2, Pou6f1, Dazap2, BC004728, Bin2, Ela1, Galnt6, Slc4a8, Scn8a
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-003J17.bB6Ng01-003J17.g
ACCDH841268DH841269
length1,138687
definitionDH841268|Mus musculus domesticus DNA, BAC clone: B6Ng01-003J17, 5' end.DH841269|Mus musculus domesticus DNA, BAC clone: B6Ng01-003J17, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(99,833,690 - 99,834,828)(99,703,995 - 99,704,675)
sequence
gaattctaacacttcaatccttacacgacttctcagtcatatttctaaga
tcccactctggcagaaaggctctcctgctctgcccacaaagcatctttgt
ttccatttccttctagccaaccttaagcctttgaaactgacattttaatg
tattatatcacaaatctaccttcttttccactctttctttctaagagaag
gtcacacttagtctggcctcaagcttgtgagtttaaaatactaagattgt
aaatgtaaggatgagtcacagggtgagtgagatagctctcaggtcatgcc
catagcacatgccacaaaaacttgacaccctgagctcagtatcttgactc
catagtccaaggactaaaagctgtcctctgcacaaagaaagtttccagta
tctacagaagtttgagaatgtaacatgtcaagaccgacaaaaccaatata
aataacatttactgaattttattttaaaaaagattaggaatctatgtagg
aatctatgatggatagttttatttaaagatttatgtgtgaacatttgcct
gcatgtacgtctgtgaaccacatgtgtattattccatgcctgtagaaatc
agaaaaagatggtcaatccccagaaactggaatttaagatagttgtgaat
tactgtgtaggtgctgggaattgaacctgagccatcacaatgtacagcag
tttaaccaatgacaaccaatgcctctcaagcctgttcattttttgagaac
aacaacaacaacaacagggtctcactttggcctaaaatttatatgcagat
caggctgaccttggactctcagagacacaagtgcctctgccttttgtgtg
ctaggactaaaagtgtgtgcctacatgcctggctattggttttcaattgt
taacttaacatagcctagaactgctgagaaagcttcagtaggcatctgac
tacaccaggctgctctaagtgatgtggaaaacctgcctcaaacataggca
gtccttctatactggatgagaaaaaggaacaggtatagaaaactttttca
ttacctgaacgtcactctgtatagtcagttcactcactcttgttaagaaa
cagcttcttcggttttttctttttggtggccttccaga
gaattcctaacataatttagtaccatgttaccttgttgaaccaatgcaca
tatatgtgcatgcagacctttaaaaagagctaagctttttcaggctggga
agatggctcatcagggaaaaggtgcttgccatgaagcctgatgcactgag
ttcaaaccctggaacccgcaggggttccaggaagaatcctggaagaaaag
aacagaccccacagttctcatctgacctacattcaatgcacatgccatgg
cgcatgcgcacacgcgcgcatgcacacactataaatgtaaaaaagcaaaa
gaaggaaagaaagaaagaaagaaagaaagtaaggaagaaagaaagaaagg
aaggaagaagaaaagaaagaaagaaagaaagaaagaaagaaagaaagaaa
gaaagaaaggacgaacgaacttctctgggctggcaagatggctcagaaga
tgaaaacctttgctgcacaagactaaggaccagagtttgatcctcaaatc
ctaagttagagagaaccaactcctataagctgccctctgacctccacaag
cctaccatagcacgatggctggtattcatgcacacacatcacacaaatgg
taatttttaaaatatatatatatatatatatatatatatatatatatata
tatatatatattgaaatatatgtatatagggatatat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr15_99833690_99834828
seq2: B6Ng01-003J17.b_44_1181 (reverse)

seq1  TCTGGAAAGACCACAAAAAGAAAAACCCGAAGAAGCTGTTTC-TAAC-AG  48
      ||||||| | |  |||||||||||| |||||||||||||||| |||| ||
seq2  TCTGGAAGGCCACCAAAAAGAAAAAACCGAAGAAGCTGTTTCTTAACAAG  50

seq1  GGTAGATGAACTGACTATACAGAGTGACGTTCAGGTAATTGAAAAGTTTT  98
       ||   |||||||||||||||||||||||||||||||||  |||||||||
seq2  AGTGAGTGAACTGACTATACAGAGTGACGTTCAGGTAATGAAAAAGTTTT  100

seq1  TCTTATTCCTTGTCCTTTTTTCTCATCCAGTAATAGAAGGACTGCCTATG  148
         ||| || ||| | ||||||||||||||| ||||||||||||||||||
seq2  --CTATACC-TGTTCCTTTTTCTCATCCAGT-ATAGAAGGACTGCCTATG  146

seq1  TTTGGGGCAGGTTCTCCCACATCACTTAGAGCAGCCTGGTGTAGTCAGAT  198
      |||| |||||||| | ||||||||||||||||||||||||||||||||||
seq2  TTTGAGGCAGGTT-TTCCACATCACTTAGAGCAGCCTGGTGTAGTCAGAT  195

seq1  GCCTACTGAAGCTTTCTCAGCAGTTCTAGGCTATGTTAAGTTAAC-ATTG  247
      ||||||||||||||||||||||||||||||||||||||||||||| ||||
seq2  GCCTACTGAAGCTTTCTCAGCAGTTCTAGGCTATGTTAAGTTAACAATTG  245

seq1  AAAACCAATAGCCAGGCATGTAGGCACACACCTTTAGTCCTAGCACACAA  297
      ||||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  AAAACCAATAGCCAGGCATGTAGGCACACACTTTTAGTCCTAGCACACAA  295

seq1  GAGGCAGAGGCACTTGTGTCTCTGAGAGTCCAAGGTCAGCCTGATCTGCA  347
       |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGCAGAGGCACTTGTGTCTCTGAGAGTCCAAGGTCAGCCTGATCTGCA  345

seq1  TATAAATTTTAGGCCAAAGTGAGACCCTGTTGTTGTTGTTGTTGTTCTCA  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAAATTTTAGGCCAAAGTGAGACCCTGTTGTTGTTGTTGTTGTTCTCA  395

seq1  AAAAATGAACAGGCTTGAGAGGCATTGGTTGTCATTGGTT-AACTGCTGT  446
      |||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  AAAAATGAACAGGCTTGAGAGGCATTGGTTGTCATTGGTTAAACTGCTGT  445

seq1  ACATTGTGATGGCTCAGGTTCAATTCCCAGCACCTACACAGTAATTCACA  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATTGTGATGGCTCAGGTTCAATTCCCAGCACCTACACAGTAATTCACA  495

seq1  ACTATCTTAAATTCCAGTTTCTGGGGATTGACCATCTTTTTCTGATTTCT  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTATCTTAAATTCCAGTTTCTGGGGATTGACCATCTTTTTCTGATTTCT  545

seq1  ACAGGCATGGAATAATACACATGTGGTTCACAGACGTACATGCAGGCAAA  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGGCATGGAATAATACACATGTGGTTCACAGACGTACATGCAGGCAAA  595

seq1  TGTTCACACATAAATCTTTAAATAAAACTATCCATCATAGATTCCTACAT  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTCACACATAAATCTTTAAATAAAACTATCCATCATAGATTCCTACAT  645

seq1  AGATTCCTAATCTTTTTTAAAATAAAATTCAGTAAATGTTATTTATATTG  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATTCCTAATCTTTTTTAAAATAAAATTCAGTAAATGTTATTTATATTG  695

seq1  GTTTTGTCGGTCTTGACATGTTACATTCTCAAACTTCTGTAGATACTGGA  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTGTCGGTCTTGACATGTTACATTCTCAAACTTCTGTAGATACTGGA  745

seq1  AACTTTCTTTGTGCAGAGGACAGCTTTTAGTCCTTGGACTATGGAGTCAA  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTTTCTTTGTGCAGAGGACAGCTTTTAGTCCTTGGACTATGGAGTCAA  795

seq1  GATACTGAGCTCAGGGTGTCAAGTTTTTGTGGCATGTGCTATGGGCATGA  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATACTGAGCTCAGGGTGTCAAGTTTTTGTGGCATGTGCTATGGGCATGA  845

seq1  CCTGAGAGCTATCTCACTCACCCTGTGACTCATCCTTACATTTACAATCT  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGAGAGCTATCTCACTCACCCTGTGACTCATCCTTACATTTACAATCT  895

seq1  TAGTATTTTAAACTCACAAGCTTGAGGCCAGACTAAGTGTGACCTTCTCT  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTATTTTAAACTCACAAGCTTGAGGCCAGACTAAGTGTGACCTTCTCT  945

seq1  TAGAAAGAAAGAGTGGAAAAGAAGGTAGATTTGTGATATAATACATTAAA  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAAAGAAAGAGTGGAAAAGAAGGTAGATTTGTGATATAATACATTAAA  995

seq1  ATGTCAGTTTCAAAGGCTTAAGGTTGGCTAGAAGGAAATGGAAACAAAGA  1046
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTCAGTTTCAAAGGCTTAAGGTTGGCTAGAAGGAAATGGAAACAAAGA  1045

seq1  TGCTTTGTGGGCAGAGCAGGAGAGCCTTTCTGCCAGAGTGGGATCTTAGA  1096
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTTTGTGGGCAGAGCAGGAGAGCCTTTCTGCCAGAGTGGGATCTTAGA  1095

seq1  AATATGACTGAGAAGTCGTGTAAGGATTGAAGTGTTAGAATTC  1139
      |||||||||||||||||||||||||||||||||||||||||||
seq2  AATATGACTGAGAAGTCGTGTAAGGATTGAAGTGTTAGAATTC  1138

seq1: chr15_99703995_99704675
seq2: B6Ng01-003J17.g_63_749

seq1  GAATTCCTAACATAATTTAGTACCATGTTACCTTGTTGAACCAATGCACA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTAACATAATTTAGTACCATGTTACCTTGTTGAACCAATGCACA  50

seq1  TATATGTGCATGCAGACCTTTAAAAAGAGCTAAGCTTTTTCAGGCTGGGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATGTGCATGCAGACCTTTAAAAAGAGCTAAGCTTTTTCAGGCTGGGA  100

seq1  AGATGGCTCATCAGGGAAAAGGTGCTTGCCATGAAGCCTGATGCACTGAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATGGCTCATCAGGGAAAAGGTGCTTGCCATGAAGCCTGATGCACTGAG  150

seq1  TTCAAACCCTGGAACCCGCAGGGGTTCCAGGAAGAATCCTGGAAGAAAAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAAACCCTGGAACCCGCAGGGGTTCCAGGAAGAATCCTGGAAGAAAAG  200

seq1  AACAGACCCCACAGTTCTCATCTGACCTACATTCAATGCACATGCCATGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAGACCCCACAGTTCTCATCTGACCTACATTCAATGCACATGCCATGG  250

seq1  CGCATGCGCACACGCGCGCATGCACACACTATAAATGTAAAAAAGCAAAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCATGCGCACACGCGCGCATGCACACACTATAAATGTAAAAAAGCAAAA  300

seq1  GAAGGAAAGAAAGAAAGAAAGAAAGAAAGTAAGGAAGAAAGAAAGAAAGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGGAAAGAAAGAAAGAAAGAAAGAAAGTAAGGAAGAAAGAAAGAAAGG  350

seq1  AAGGAAGAAGAAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGAAGAAGAAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAA  400

seq1  GAAAGAAAGGACGAACGAACTTCTCTGGGCTGGCAAGATGGCTCAGAAGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGAAAGGACGAACGAACTTCTCTGGGCTGGCAAGATGGCTCAGAAGA  450

seq1  TGAAAACCTTTGCTGCACAAGACTAAGGACCAGAGTTTGATCCTCAAATC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAAACCTTTGCTGCACAAGACTAAGGACCAGAGTTTGATCCTCAAATC  500

seq1  CTAAGTTAGAGAGAACCAACTCCTATAAGCTGCCCTCTGACCTCCACAAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAGTTAGAGAGAACCAACTCCTATAAGCTGCCCTCTGACCTCCACAAG  550

seq1  CCTACCATAGCACGATGGCTGGTATTCATGCACACACATCACACAAATGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTACCATAGCACGATGGCTGGTATTCATGCACACACATCACACAAATGG  600

seq1  TAATTTTTAAAATATATATATATATATATATATATATATATATATATATA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTTTTAAAATATATATATATATATATATATATATATATATATATATA  650

seq1  TATATATATAT----ATATATATATATA--TATATAT  681
      |||||||||||    |||||| ||||||   ||||||
seq2  TATATATATATTGAAATATATGTATATAGGGATATAT  687