BAC Information

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BAC

Clone NameB6Ng01-004D05
Chromosome15 (Build37)
Map Location 12,715,831 - 12,821,477
singlet/doubletdoublet
Overlap gene6030458C11Rik, Rnasen
Upstream geneNpr3, LOC381002, Sub1, LOC100040027, Zfr, LOC100040052, LOC100040066, Mtmr12, LOC100039846, Golph3, Pdzd2, LOC100040109
Downstream geneCdh6, LOC100039907, LOC666686, LOC239338, LOC666708
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-004D05.bB6Ng01-004D05.g
ACCDH841679DH841680
length1,1481,038
definitionDH841679|Mus musculus domesticus DNA, BAC clone: B6Ng01-004D05, 5' end.DH841680|Mus musculus domesticus DNA, BAC clone: B6Ng01-004D05, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(12,715,831 - 12,716,983)(12,820,439 - 12,821,477)
sequence
gaattcatttttgttgttgttgttgctgctactgttgtttttgtttttga
cttgaggtctctctgtgtaacagccctggctgtccccacactctctttat
aaaccagaatggtttctgcaggtaagtactgagattaaaggtatgtgctg
ccacagccagtggagacttcatttctgatggcaccattgtcacataagct
ttgtattaagtagatttgtttatgacttagaccattttgtgctgtgttag
cagttaccatagataggatgatttacatggaatagaagacgggtttccat
gctatggaagttgggaaatctgaggtaccgtaaggcatgtactacgtgca
gcatcaccatatggcagaaagcaacagaaggcacaggaggagagagtaaa
ggaactgaattcccccgtcataaactcacctcctcggtaatgatatcact
tcattatgaggccaaagccttcaggcctattctcctcataaaagtgtgtc
ctctttgcttttggtgctgtatctcagacctgggcctctcatgtacacca
aaccctgcaccattccctcagcctggtctcttaatgctgtttcaatggtc
attaagtttcaatgtgaatttgggaggagatgaacatcaaagcatgctag
tgtgtagccctttggtcacaggactcttaggcaggatccttggtgttagg
gaagaaatcttctcttccaacaggggtattcaggtaggaacaaaacacat
cgtctttctagtcatcccaagcaaaggttttgttgatttcactcacctaa
gacattgggtgttcacttttctagactcctgtggtatcttccttagtgct
tgactaacctcccccacgtctccttctgtcttgtaagccagagcttcatg
tgctgaatttcaccatagcagcatcctgtacgacagtgggtctcaacctg
tgggtcatgaccttctggcaatctctgtcttcaaaccatgtacattacga
tccacaacagtagtaaacttcattacgaagtagagcctccaaaactattt
acattacaactcataacagtagccagtactatttatgagtagtgataaaa
cagtgttatgggtttgggaggcatcacccacgaatgagggagcgtatt
gaattcattaagatttgtttgtctcaaaggacatcaggagattaaaaggc
aatctttagaacaaggaaagattttgtaaatcatgtatttgataagagtc
tcatctagaatgtaaaaaaagttgatttaaattattaattaaaaaaacta
aagatgtgagagagatatgaactaatatttttccaaacaaccagtaagta
caggcatcagtgccgaacatcatggcacatcaggggataatgaaaaacta
catccaactaggatggctagggtctgaaagaggcagacatgtcacataga
caattacataaaagccctagacaaggctggggctttggctcagtggaaac
acaaggacctgaactcaaatctccagcatccatgtgagcagttgggcaca
gcttgcaggcctgcgcctcacccagggggatcccggagctcggtgtcagt
cagcctggcaaaaggacaggcttttggttcggctagagagcccatcttag
tacaataaggtagaaagcaatagagaaagtgcacacacacactatgtata
catgcactatactaaaacacacacacacacacacacacacacacacacgc
atgcacgcacttacacaaaccaaaattttaaattaaaatgtttttaagag
acatagtatatactgctattgtgaatttttaaagaaagttccttaaaaga
taaaacagttaccatatgacctcaaaattccattcctggataaatatcaa
gaaaagtcaaagcatatgtccacaagcccaacaaccactgagtgaataaa
caaaatgtgttagatttcacaccatggcgtattatttagcaagagaagaa
ataagggatatctgttacacagaaatcctatgtccaaaagagtgaggtgc
agaagacacggagcgcagcgctgctcccagactgtgcagaaaggtgttag
cgaagaggtgaccgttgtgtagggctggggagcctgagagctacaggact
actcgtgggcataggtattggatttatatgagaaatgc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr15_12715831_12716983
seq2: B6Ng01-004D05.b_48_1195

seq1  GAATTCATTTTTGTTGTTGTTGTTGCTGCTACTGTTGTTTTTGTTTTTGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATTTTTGTTGTTGTTGTTGCTGCTACTGTTGTTTTTGTTTTTGA  50

seq1  CTTGAGGTCTCTCTGTGTAACAGCCCTGGCTGTCCCCACACTCTCTTTAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGAGGTCTCTCTGTGTAACAGCCCTGGCTGTCCCCACACTCTCTTTAT  100

seq1  AAACCAGAATGGTTTCTGCAGGTAAGTACTGAGATTAAAGGTATGTGCTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACCAGAATGGTTTCTGCAGGTAAGTACTGAGATTAAAGGTATGTGCTG  150

seq1  CCACAGCCAGTGGAGACTTCATTTCTGATGGCACCATTGTCACATAAGCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACAGCCAGTGGAGACTTCATTTCTGATGGCACCATTGTCACATAAGCT  200

seq1  TTGTATTAAGTAGATTTGTTTATGACTTAGACCATTTTGTGCTGTGTTAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTATTAAGTAGATTTGTTTATGACTTAGACCATTTTGTGCTGTGTTAG  250

seq1  CAGTTACCATAGATAGGATGATTTACATGGAATAGAAGACGGGTTTCCAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTTACCATAGATAGGATGATTTACATGGAATAGAAGACGGGTTTCCAT  300

seq1  GCTATGGAAGTTGGGAAATCTGAGGTACCGTAAGGCATGTACTACGTGCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTATGGAAGTTGGGAAATCTGAGGTACCGTAAGGCATGTACTACGTGCA  350

seq1  GCATCACCATATGGCAGAAAGCAACAGAAGGCACAGGAGGAGAGAGTAAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATCACCATATGGCAGAAAGCAACAGAAGGCACAGGAGGAGAGAGTAAA  400

seq1  GGAACTGAATTCCCCCGTCATAAACTCACCTCCTCGGTAATGATATCACT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAACTGAATTCCCCCGTCATAAACTCACCTCCTCGGTAATGATATCACT  450

seq1  TCATTATGAGGCCAAAGCCTTCAGGCCTATTCTCCTCATAAAAGTGTGTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTATGAGGCCAAAGCCTTCAGGCCTATTCTCCTCATAAAAGTGTGTC  500

seq1  CTCTTTGCTTTTGGTGCTGTATCTCAGACCTGGGCCTCTCATGTACACCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTTGCTTTTGGTGCTGTATCTCAGACCTGGGCCTCTCATGTACACCA  550

seq1  AACCCTGCACCATTCCCTCAGCCTGGTCTCTTAATGCTGTTTCAATGGTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCCTGCACCATTCCCTCAGCCTGGTCTCTTAATGCTGTTTCAATGGTC  600

seq1  ATTAAGTTTCAATGTGAATTTGGGAGGAGATGAACATCAAAGCATGCTAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAAGTTTCAATGTGAATTTGGGAGGAGATGAACATCAAAGCATGCTAG  650

seq1  TGTGTAGCCCTTTGGTCACAGGACTCTTAGGCAGGATCCTTGGTGTTAGG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTAGCCCTTTGGTCACAGGACTCTTAGGCAGGATCCTTGGTGTTAGG  700

seq1  GAAGAAATCTTCTCTTCCAACAGGGGTATTCAGGTAGGAAC-AAACACAT  749
      ||||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  GAAGAAATCTTCTCTTCCAACAGGGGTATTCAGGTAGGAACAAAACACAT  750

seq1  CGTCTTTCTAGTCATCCCAAGCAAAGGTTTTGTTGATTTCACTCACCTAA  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTCTTTCTAGTCATCCCAAGCAAAGGTTTTGTTGATTTCACTCACCTAA  800

seq1  GACATTGGGTGTTCAC-TTTCTAGACTCCTGTGGTATCTTCCTTAGTGCT  848
      |||||||||||||||| |||||||||||||||||||||||||||||||||
seq2  GACATTGGGTGTTCACTTTTCTAGACTCCTGTGGTATCTTCCTTAGTGCT  850

seq1  TGACTAACCTCCCCCACGTCTCCTTCTGTCTTGTAAGCCAGAGCTTCATG  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACTAACCTCCCCCACGTCTCCTTCTGTCTTGTAAGCCAGAGCTTCATG  900

seq1  TGCTGAATTTCACCATAGCAGCATCCCTGTACGACAGTGGTTCTCAACCT  948
      |||||||||||||||||||||||| ||||||||||||||| |||||||||
seq2  TGCTGAATTTCACCATAGCAGCAT-CCTGTACGACAGTGGGTCTCAACCT  949

seq1  GTGGGTCATGACCCTTCTGGCAAATCTCTGTCTCCAAAACCATGTACATT  998
      ||||||||||| ||||||||| ||||||||||| | ||||||||||||||
seq2  GTGGGTCATGA-CCTTCTGGC-AATCTCTGTCTTC-AAACCATGTACATT  996

seq1  ACGATCCACAACAGTAGTAAACTTTCAATTACGAAGTAGAGCCTCCAAAA  1048
      ||||||||||||||||||||||||   |||||||||||||||||||||||
seq2  ACGATCCACAACAGTAGTAAACTT--CATTACGAAGTAGAGCCTCCAAAA  1044

seq1  CTATTTACATTACAACCCATAACAGTAGCCAAGGTACTA-TTATGAAGTA  1097
      |||||||||||||||| ||||||||||||||  |||||| ||||| ||||
seq2  CTATTTACATTACAACTCATAACAGTAGCCA--GTACTATTTATG-AGTA  1091

seq1  GTGATAAAAACAGTGTTATGG--TTGGGAGGCATCA-CCACGACATGAGG  1144
      ||||| |||||||||||||||  ||||||||||||| |||||| ||||||
seq2  GTGAT-AAAACAGTGTTATGGGTTTGGGAGGCATCACCCACGA-ATGAGG  1139

seq1  AAGCGTATT  1153
       ||||||||
seq2  GAGCGTATT  1148

seq1: chr15_12820439_12821477
seq2: B6Ng01-004D05.g_67_1101 (reverse)

seq1  TTTCTTCATATTAAATCCAATACCCTATGCCCACGAGTAGTCCTGGTAGC  50
      |||| ||||| ||||||||||| ||||||||||||||||||||| |||||
seq2  TTTC-TCATA-TAAATCCAATA-CCTATGCCCACGAGTAGTCCT-GTAGC  46

seq1  TCTCAGGCTCCCCAGCCCTACACAACGGTCACCTCTTCGCTAACACCTTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCAGGCTCCCCAGCCCTACACAACGGTCACCTCTTCGCTAACACCTTT  96

seq1  CTGCACAGTCTGGGAGCAGCGCTGCGCTCCGTGTCTTCTGCACCTCACTT  150
      |||||||||||||||||||||||||||||||||||||||||||||||| |
seq2  CTGCACAGTCTGGGAGCAGCGCTGCGCTCCGTGTCTTCTGCACCTCAC-T  145

seq1  CTCTTGG-CATAGGATTTCTGTGTAACAGATATCCCTTATTTCTTCTCTT  199
      || |||| ||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTGGACATAGGATTTCTGTGTAACAGATATCCCTTATTTCTTCTCTT  195

seq1  GCTAAATAATACGCCATGGTGTGAAATCTAACACATTTTGTTTATTCACT  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTAAATAATACGCCATGGTGTGAAATCTAACACATTTTGTTTATTCACT  245

seq1  CAGTGGTTGTTGGGCTTGTGGACATATGCTTTGACTTTTCTTGATATTTA  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTGGTTGTTGGGCTTGTGGACATATGCTTTGACTTTTCTTGATATTTA  295

seq1  TCCAGGAATGGAATTTTGAGGTCATATGGTAACTGTTTTATCTTTTAAGG  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAGGAATGGAATTTTGAGGTCATATGGTAACTGTTTTATCTTTTAAGG  345

seq1  AACTTTCTTTAAAAATTCACAATAGCAGTATATACTATGTCTCTTAAAAA  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTTTCTTTAAAAATTCACAATAGCAGTATATACTATGTCTCTTAAAAA  395

seq1  CATTTTAATTTAAAATTTTGGTTTGTGTAAGTGCGTGCATGCGTGTGTGT  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTTAATTTAAAATTTTGGTTTGTGTAAGTGCGTGCATGCGTGTGTGT  445

seq1  GTGTGTGTGTGTGTGTGTGTGTGTTTTAGTATAGTGCATGTATACATAGT  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGTGTGTGTGTGTGTGTGTGTTTTAGTATAGTGCATGTATACATAGT  495

seq1  GTGTGTGTGCACTTTCTCTATTGCTTTCTACCTTATTGTACTAAGATGGG  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGTGTGCACTTTCTCTATTGCTTTCTACCTTATTGTACTAAGATGGG  545

seq1  CTCTCTAGCCGAACCAAAAGCCTGTCCTTTTGCCAGGCTGACTGACACCG  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCTAGCCGAACCAAAAGCCTGTCCTTTTGCCAGGCTGACTGACACCG  595

seq1  AGCTCCGGGATCCCCCTGGGTGAGGCGCAGGCCTGCAAGCTGTGCCCAAC  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTCCGGGATCCCCCTGGGTGAGGCGCAGGCCTGCAAGCTGTGCCCAAC  645

seq1  TGCTCACATGGATGCTGGAGATTTGAGTTCAGGTCCTTGTGTTTCCACTG  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTCACATGGATGCTGGAGATTTGAGTTCAGGTCCTTGTGTTTCCACTG  695

seq1  AGCCAAAGCCCCAGCCTTGTCTAGGGCTTTTATGTAATTGTCTATGTGAC  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCAAAGCCCCAGCCTTGTCTAGGGCTTTTATGTAATTGTCTATGTGAC  745

seq1  ATGTCTGCCTCTTTCAGACCCTAGCCATCCTAGTTGGATGTAGTTTTTCA  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTCTGCCTCTTTCAGACCCTAGCCATCCTAGTTGGATGTAGTTTTTCA  795

seq1  TTATCCCCTGATGTGCCATGATGTTCGGCACTGATGCCTGTACTTACTGG  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATCCCCTGATGTGCCATGATGTTCGGCACTGATGCCTGTACTTACTGG  845

seq1  TTGTTTGGAAAAATATTAGTTCATATCTCTCTCACATCTTTAGTTTTTTT  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTTGGAAAAATATTAGTTCATATCTCTCTCACATCTTTAGTTTTTTT  895

seq1  AATTAATAATTTAAATCAACTTTTTTTACATTCTAGATGAGACTCTTATC  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTAATAATTTAAATCAACTTTTTTTACATTCTAGATGAGACTCTTATC  945

seq1  AAATACATGATTTACAAAATCTTTCCTTGTTCTAAAGATTGCCTTTTAAT  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATACATGATTTACAAAATCTTTCCTTGTTCTAAAGATTGCCTTTTAAT  995

seq1  CTCCTGATGTCCTTTGAGACAAACAAATCTTAATGAATTC  1039
      ||||||||||||||||||||||||||||||||||||||||
seq2  CTCCTGATGTCCTTTGAGACAAACAAATCTTAATGAATTC  1035