BAC Information

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BAC

Clone NameB6Ng01-004D09
Chromosome15 (Build37)
Map Location 23,015,971 - 23,150,749
singlet/doubletdoublet
Overlap genenone
Upstream geneEG545091, Cdh18
Downstream geneLOC624863, LOC666989
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-004D09.bB6Ng01-004D09.g
ACCDH841687DH841688
length1,1721,057
definitionDH841687|Mus musculus domesticus DNA, BAC clone: B6Ng01-004D09, 5' end.DH841688|Mus musculus domesticus DNA, BAC clone: B6Ng01-004D09, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(23,015,971 - 23,016,792)(23,149,677 - 23,150,749)
sequence
gaattctttgtttagctctgtaccccatttttaaattaggttatttgttt
ctcaggagtttaagggaaatgggggtagctgctagacagtcccagatgcc
atggaagcaagaggttctcaggacccaacagggatgactttagctgaaat
acccaacaaagagaagattgaagctgtagagaccatatccagtggatatg
catggcccccatttgagggatggggccacccaccctccttaaaaaaatta
acccagaattgttcctctcaaaaggagattcaggaacaaagagtggaaaa
gataccgaaggtataggccatccagagaccaccccgcctaggaatgcatc
ccatccgcagacactaaaactcagacactattgctgatgccaaggaacac
tggcaggagcctggcatagctgtttcctgagatgctctgccagaacctaa
ccactacagttgcagatgcttgcagccaaccataggactgaggatggcaa
ccccaatggaagaattagggaaaggaatgaaggggattgcaacctaatta
gaacaacaatagcaaataactggaccccatagagttcccagggaataaac
caccaacaaagaatacacatggagggacccatgtctacagctgcgtatgt
agcagaggattaccttatctggcatcaatgggaggggagccccttggtcc
tgtggaagttcgatgccccccagtgcaggggaatgctaaggatggtgagg
caggagtaggtgggtggagaagcaccctcacagaggcagcagagagaaaa
gggtttcagaggggaaaccagtaagggggacaacatttgaaatgtaaata
aataaaataaccaataaaaatgaacaaaaatacacaaataattcatttat
agattgaacaaaattcttccagtaaataaacatgccaacactacataatt
tagaaaagtcatgttccttgcagtctaattcatccatgctgtggagagat
attgtacatgtgaaaaccaattgttattcagaagacaaatgagaatgatc
agaacgatcagtgatggatgttcatatgtctcattctacttatgttgtgg
ccaataaggggatgcttcttgcaattaacatgaaacctcaattcttctaa
atatgttttcttcctttacttt
gaattcactccataaaactgtttatgctccctagaccacattaggatcat
gacctaaaaatttatagctttcactccaatgcacaattgctagccaagat
aatatgtgattccttacagacgaataattttaaaaggttaaggacatggt
ggcaaagtcattaattttgaaagttactttgagttaggacttcaagctct
attacaaaggtgggtcacaaagttaaaaatgtaatatagtgttgacacaa
tatttgagtaattgaaatgctcatctttatatttcagtagaagaaggaaa
taagtgtcgatatgcaatgttagcaacctctcatcaaaccaacactgatt
tttcataaaaatattgatgaagcaatgtgatattagcctaattccaagtt
ggggatcttgaagtacaatattagaagcctcatttctcaataatttgaag
tggtagtagtatcaacactgtgactttggaatatttatctagtcgtgcag
ggttagtacaaaagaccaaaagaaaaattaagaaaatttcaacacttctt
tctgttttggaagcatatgaagcctcacacaagaatcaaagagaggtcgc
ttgaaactaacaacaacaataacaacaacaacaaactatgaattttttcc
tgatactataaaaatgatagaaagtctgcccaactctttctttttttaaa
aaactctgtaagaacaatctagaacttactgtcaattaaatttattagag
atgcattttcatgcttttaaatgattgattttagagaatttgctgtagca
gtaggaacagtctaactcagaattctgaaaaggcacactaaggaattcca
tttcagcacattacagagaggcaaaatgcttacaagtgttcacctaaggc
gggaagttcacacagaaaggaaagatttttagaaatcctagtgaagatta
ctaaactagacgctctctgatcagagagctcgagaggggaggggcccagc
tatcagagctcatatagatgtcagtcacacggaaatgcatgaaataggag
gctataa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr15_23015971_23016792
seq2: B6Ng01-004D09.b_417_1216

seq1  AGACACTATTGCTGATGCCAAGGAACACTGGCAGGAGCCTGGCATAGCTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACACTATTGCTGATGCCAAGGAACACTGGCAGGAGCCTGGCATAGCTG  50

seq1  TTTCCTGAGATGCTCTGCCAGAACCTAACCACTACAGTTGCAGATGCTTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCTGAGATGCTCTGCCAGAACCTAACCACTACAGTTGCAGATGCTTG  100

seq1  CAGCCAACCATAGGACTGAGGATGGCAACCCCAATGGAAGAATTAGGGAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCCAACCATAGGACTGAGGATGGCAACCCCAATGGAAGAATTAGGGAA  150

seq1  AGGAATGAAGGGGATTGCAACCTAATTAGAACAACAATAGCAAATAACTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAATGAAGGGGATTGCAACCTAATTAGAACAACAATAGCAAATAACTG  200

seq1  GACCCCATAGAGTTCCCAGGGAATAAACCACCAACAAAGAATACACATGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCCCATAGAGTTCCCAGGGAATAAACCACCAACAAAGAATACACATGG  250

seq1  AGGGACCCATGTCTACAGCTGCGTATGTAGCAGAGGATTACCTTATCTGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGACCCATGTCTACAGCTGCGTATGTAGCAGAGGATTACCTTATCTGG  300

seq1  CATCAATGGGAGGGGAGCCCCTTGGTCCTGTGGAAGTTCGATGCCCCCCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCAATGGGAGGGGAGCCCCTTGGTCCTGTGGAAGTTCGATGCCCCCCA  350

seq1  GTGCAGGGGAATGCTAAGGATGGTGAGGCAGGAGTAGGTGGGTGGAGAAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCAGGGGAATGCTAAGGATGGTGAGGCAGGAGTAGGTGGGTGGAGAAG  400

seq1  CACCCTCACAGAGGCAGCAGAGAGAAAAGGGTTTCAGAGGGGAAACCAGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCCTCACAGAGGCAGCAGAGAGAAAAGGGTTTCAGAGGGGAAACCAGT  450

seq1  AAGGGGGACAACATTTGAAATGTAAATAAATAAAATAACCAATAAAAATG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGGGGACAACATTTGAAATGTAAATAAATAAAATAACCAATAAAAATG  500

seq1  AACAAAAATACACAAATAATTCATTTATAGATTGAACAAAAATTCTTCCA  550
      ||||||||||||||||||||||||||||||||||||| ||||||||||||
seq2  AACAAAAATACACAAATAATTCATTTATAGATTGAAC-AAAATTCTTCCA  549

seq1  GTAAATAAACATGCCAACACTACATAATTTAGAAAAGTCATGTTCCTTGC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAATAAACATGCCAACACTACATAATTTAGAAAAGTCATGTTCCTTGC  599

seq1  AGTCTAATTCATCCATGCTTGTGGAGAGATAATGTACATGTTGAAAACCA  650
      |||||||||||||||||| |||||||||||| |||||||| |||||||||
seq2  AGTCTAATTCATCCATGC-TGTGGAGAGATATTGTACATG-TGAAAACCA  647

seq1  AATGTTATTCAGAAGACAAATGAGAAATGATCAGAAACGATTCAGTGGTA  700
      | |||||||||||||||||||||| ||||||||| ||||| |||||| | 
seq2  ATTGTTATTCAGAAGACAAATGAG-AATGATCAG-AACGA-TCAGTGAT-  693

seq1  TGATGTTCATAATGTCTCATATCTACTTTATGTTGGTGCCACATAAAGGT  750
       ||||||||| ||||||||| ||||| ||||||||  |||| || |||| 
seq2  GGATGTTCAT-ATGTCTCAT-TCTAC-TTATGTTGTGGCCA-AT-AAGGG  738

seq1  GATGCTTTCTTGCAATTTTACATGGATACTCAATTCTCTCTTACAAATAT  800
      ||||| ||||||||| || ||||| |  ||||||||| |||   ||||||
seq2  GATGC-TTCTTGCAA-TTAACATGAAACCTCAATTCT-TCT---AAATAT  782

seq1  GTATTTTCTTTCCACTTACTTT  822
      |  |||||||  |  |||||||
seq2  G--TTTTCTT--CCTTTACTTT  800

seq1: chr15_23149677_23150749
seq2: B6Ng01-004D09.g_67_1123 (reverse)

seq1  TTATAAGCCTCCCTATTTCATGCATTTCCGGTTGTGAACTGACATCTATA  50
      |||| ||||| |||||||||||||||||||  |||| |||||||||||||
seq2  TTAT-AGCCT-CCTATTTCATGCATTTCCG--TGTG-ACTGACATCTATA  45

seq1  TGAGGCTCTGATAGCCTTGGGCCCCTCCCCTTCTCCGAGCTCTTCTGATC  100
      ||| |||||||||||  ||||||||||||| ||| ||||||| |||||||
seq2  TGA-GCTCTGATAGC--TGGGCCCCTCCCC-TCT-CGAGCTC-TCTGATC  89

seq1  AGAAGAGCGTCTTAGTTTAGTAATCTTTCACTAGGATTTCTAAAAATCTT  150
      || |||||||| ||||||||||||| ||||||||||||||||||||||||
seq2  AG-AGAGCGTC-TAGTTTAGTAATC-TTCACTAGGATTTCTAAAAATCTT  136

seq1  TCCTTTCTTGTGTGAACTTCCCGCCTTAGGTGAACACTTGTTAAGCATTT  200
      ||||||| |||||||||||||||||||||||||||||||| |||||||||
seq2  TCCTTTC-TGTGTGAACTTCCCGCCTTAGGTGAACACTTG-TAAGCATTT  184

seq1  TGCCTCTCTGTAATGTGCTGAAATGGAATTCCTTAGTGTGCCTTTTCAGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCTCTCTGTAATGTGCTGAAATGGAATTCCTTAGTGTGCCTTTTCAGA  234

seq1  ATTCTGAGTTAGACTGTTCCTACTGCTACAGCAAATTCTCTAAAATCAAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTGAGTTAGACTGTTCCTACTGCTACAGCAAATTCTCTAAAATCAAT  284

seq1  CATTTAAAAGCATGAAAATGCATCTCTAATAAATTTAATTGACAGTAAGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTAAAAGCATGAAAATGCATCTCTAATAAATTTAATTGACAGTAAGT  334

seq1  TCTAGATTGTTCTTACAGAGTTTTTTAAAAAAAGAAAGAGTTGGGCAGAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAGATTGTTCTTACAGAGTTTTTTAAAAAAAGAAAGAGTTGGGCAGAC  384

seq1  TTTCTATCATTTTTATAGTATCAGGAAAAAATTCATAGTTTGTTGTTGTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTATCATTTTTATAGTATCAGGAAAAAATTCATAGTTTGTTGTTGTT  434

seq1  GTTATTGTTGTTGTTAGTTTCAAGCGACCTCTCTTTGATTCTTGTGTGAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTATTGTTGTTGTTAGTTTCAAGCGACCTCTCTTTGATTCTTGTGTGAG  484

seq1  GCTTCATATGCTTCCAAAACAGAAAGAAGTGTTGAAATTTTCTTAATTTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTCATATGCTTCCAAAACAGAAAGAAGTGTTGAAATTTTCTTAATTTT  534

seq1  TCTTTTGGTCTTTTGTACTAACCCTGCACGACTAGATAAATATTCCAAAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTTGGTCTTTTGTACTAACCCTGCACGACTAGATAAATATTCCAAAG  584

seq1  TCACAGTGTTGATACTACTACCACTTCAAATTATTGAGAAATGAGGCTTC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACAGTGTTGATACTACTACCACTTCAAATTATTGAGAAATGAGGCTTC  634

seq1  TAATATTGTACTTCAAGATCCCCAACTTGGAATTAGGCTAATATCACATT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATATTGTACTTCAAGATCCCCAACTTGGAATTAGGCTAATATCACATT  684

seq1  GCTTCATCAATATTTTTATGAAAAATCAGTGTTGGTTTGATGAGAGGTTG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTCATCAATATTTTTATGAAAAATCAGTGTTGGTTTGATGAGAGGTTG  734

seq1  CTAACATTGCATATCGACACTTATTTCCTTCTTCTACTGAAATATAAAGA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAACATTGCATATCGACACTTATTTCCTTCTTCTACTGAAATATAAAGA  784

seq1  TGAGCATTTCAATTACTCAAATATTGTGTCAACACTATATTACATTTTTA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGCATTTCAATTACTCAAATATTGTGTCAACACTATATTACATTTTTA  834

seq1  ACTTTGTGACCCACCTTTGTAATAGAGCTTGAAGTCCTAACTCAAAGTAA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTGTGACCCACCTTTGTAATAGAGCTTGAAGTCCTAACTCAAAGTAA  884

seq1  CTTTCAAAATTAATGACTTTGCCACCATGTCCTTAACCTTTTAAAATTAT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCAAAATTAATGACTTTGCCACCATGTCCTTAACCTTTTAAAATTAT  934

seq1  TCGTCTGTAAGGAATCACATATTATCTTGGCTAGCAATTGTGCATTGGAG  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGTCTGTAAGGAATCACATATTATCTTGGCTAGCAATTGTGCATTGGAG  984

seq1  TGAAAGCTATAAATTTTTAGGTCATGATCCTAATGTGGTCTAGGGAGCAT  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAAGCTATAAATTTTTAGGTCATGATCCTAATGTGGTCTAGGGAGCAT  1034

seq1  AAACAGTTTTATGGAGTGAATTC  1073
      |||||||||||||||||||||||
seq2  AAACAGTTTTATGGAGTGAATTC  1057