BAC Information

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BAC

Clone NameB6Ng01-004M22
Chromosome15 (Build37)
Map Location 98,178,627 - 98,332,549
singlet/doubletdoublet
Overlap geneOlfr283, 1700031M16Rik, LOC100042818, Olfr282, LOC629549, Olfr281, Olfr240-ps1, GA_x5J8B7W76D0-7895713-7896429, Lalba, Olfr234, Olfr278-ps1
Upstream geneBC038822, LOC100042774, D15Ertd682e, Pp11r, Rapgef3, 4930570C03Rik, Hdac7a, Vdr, Tmem106c, Col2a1, Senp1, Pfkm, Asb8, AI836003, Olfr288, LOC634104, EG629524, H1fnt, Zfp641, Olfr285, Olfr284
Downstream gene2310037I24Rik, LOC100043418, Ccnt1, 4930415O20Rik, Adcy6, Cacnb3, Ddx23, Rnd1, Ccdc65, Fkbp11, Arf3, 5830427D03Rik, Wnt10b, Wnt1, Ddn, Prkag1, Mll2, Rhebl1, Dhh, Lmbr1l, Tuba1b, Tuba1a, EG668092, Tuba1c, Prph1, Troap, C1ql4, 2810451A06Rik, Spats2, Kcnh3, Mcrs1, EG545136, Prpf40b, Fmnl3, Tegt, C230021P08Rik, 4930556P03Rik, Faim2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-004M22.bB6Ng01-004M22.g
ACCDH842117DH842118
length682159
definitionDH842117|Mus musculus domesticus DNA, BAC clone: B6Ng01-004M22, 5' end.DH842118|Mus musculus domesticus DNA, BAC clone: B6Ng01-004M22, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(98,178,627 - 98,179,307)(98,332,391 - 98,332,549)
sequence
gaattcttgaatacctcccctcttcttcttggacccatgataggaccaac
gtttctgctccacacactcctcatcatgatgccccagactcacagtggaa
tcaaccctccatggactaaaaccttgaaaccatgaaccaaaataaagctc
ttctcctttacatgtgtttctgccagatatgaatgtctgtcacagtcgta
agggactgggtttcataatgggtatactgctgttaatccactgagcaaat
aaggttcattggattgtttctgatttgtggctggtataatatggctatga
gtgtggtgacaattttggaattttaaattcttttaaaaacacagaaatat
aacaccatgtttttgttttaatcccaggtgtggggtacagggctgcttca
tattgttcacaatagctgactatgatttgcctcatgctctagcagggacg
tgattttgccagcagcagttagtttctgtgactatgtgacatttggaatt
ctggggacttttcagagggtatataaatgctagagccctgagaggcatgg
tgggttgttagttattattgtttgctcttgtttgttattggttgtttgct
attggttgttgttggttgcttcctgttgattgttgttggttattggttgc
tgttgattattggttgttgttttgattgttgt
attacatagaccaggctggcctagaactcacagagatcagcctgtctctg
actgctgaatgatgggattagaggtgtgtgtcaccaccacccaactggat
tttccttttgaccttaaggcaaagaataaataccacagaggtagttgtgt
gtgtgtgtg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr15_98178627_98179307
seq2: B6Ng01-004M22.b_50_731

seq1  GAATTCTTGAATACCTCCCCTCTTCTTCTTGGACCCATGATAGGACCAAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTGAATACCTCCCCTCTTCTTCTTGGACCCATGATAGGACCAAC  50

seq1  GTTTCTGCTCCACACACTCCTCATCATGATGCCCCAGACTCACAGTGGAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTCTGCTCCACACACTCCTCATCATGATGCCCCAGACTCACAGTGGAA  100

seq1  TCAACCCTCCATGGACTAAAACCTTGAAACCATGAACCAAAATAAAGCTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAACCCTCCATGGACTAAAACCTTGAAACCATGAACCAAAATAAAGCTC  150

seq1  TTCTCCTTTACATGTGTTTCTGCCAGATATGAATGTCTGTCACAGTCGTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCCTTTACATGTGTTTCTGCCAGATATGAATGTCTGTCACAGTCGTA  200

seq1  AGGGACTGGGTTTCATAATGGGTATACTGCTGTTAATCCACTGAGCAAAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGACTGGGTTTCATAATGGGTATACTGCTGTTAATCCACTGAGCAAAT  250

seq1  AAGGTTCATTGGATTGTTTCTGATTTGTGGCTGGTATAATATGGCTATGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGTTCATTGGATTGTTTCTGATTTGTGGCTGGTATAATATGGCTATGA  300

seq1  GTGTGGTGACAATTTTGGAATTTTAAATTCTTTTAAAAACACAGAAATAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGGTGACAATTTTGGAATTTTAAATTCTTTTAAAAACACAGAAATAT  350

seq1  AACACCATGTTTTTGTTTTAATCCCAGGTGTGGGGTACAGGGCTGCTTCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACACCATGTTTTTGTTTTAATCCCAGGTGTGGGGTACAGGGCTGCTTCA  400

seq1  TATTGTTCACAATAGCTGACTATGATTTGCCTCATGCTCTAGCAGGGACG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTGTTCACAATAGCTGACTATGATTTGCCTCATGCTCTAGCAGGGACG  450

seq1  TGATTTTGCCAGCAGCAGTTAGTTTCTGTGACTATGTGACATTTGGAATT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATTTTGCCAGCAGCAGTTAGTTTCTGTGACTATGTGACATTTGGAATT  500

seq1  CTGGGGACTTTTCAGAGGGTATATAAATGCTAGAGCCCTGAGAGGCATGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGGGACTTTTCAGAGGGTATATAAATGCTAGAGCCCTGAGAGGCATGG  550

seq1  TGGGTTGTTAGTTATTATTGTTTGCTCTTGTTTGTTATTGGTTGTTTGCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGTTGTTAGTTATTATTGTTTGCTCTTGTTTGTTATTGGTTGTTTGCT  600

seq1  ATTGGTTGTTGTTGGTTGCTTCCTGTTGATTGTTGTTGGTTATTGGTTGC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGGTTGTTGTTGGTTGCTTCCTGTTGATTGTTGTTGGTTATTGGTTGC  650

seq1  TGTTGATTATTGGTTGTTG-TTTGATTGTTGT  681
      ||||||||||||||||||| ||||||||||||
seq2  TGTTGATTATTGGTTGTTGTTTTGATTGTTGT  682

seq1: chr15_98332391_98332549
seq2: B6Ng01-004M22.g_73_231 (reverse)

seq1  CACACACACACACAACTACCTCTGTGGTATTTATTCTTTGCCTTAAGGTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACACACACACAACTACCTCTGTGGTATTTATTCTTTGCCTTAAGGTC  50

seq1  AAAAGGAAAATCCAGTTGGGTGGTGGTGACACACACCTCTAATCCCATCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGGAAAATCCAGTTGGGTGGTGGTGACACACACCTCTAATCCCATCA  100

seq1  TTCAGCAGTCAGAGACAGGCTGATCTCTGTGAGTTCTAGGCCAGCCTGGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGCAGTCAGAGACAGGCTGATCTCTGTGAGTTCTAGGCCAGCCTGGT  150

seq1  CTATGTAAT  159
      |||||||||
seq2  CTATGTAAT  159