BAC Information

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BAC

Clone NameB6Ng01-005B18
Chromosome15 (Build37)
Map Location 5,265,737 - 5,380,834
singlet/doubletdoublet
Overlap geneLOC100039308
Upstream genePlcxd3, C6, LOC100039214, 4930455B06Rik, C7, Card6, Rpl37, LOC100039281, Prkaa1, Ttc33, Ptger4, LOC100039322
Downstream geneLOC666291, LOC666319, LOC100039358, LOC666323, Dab2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-005B18.bB6Ng01-005B18.g
ACCDH842338DH842339
length1,144894
definitionDH842338|Mus musculus domesticus DNA, BAC clone: B6Ng01-005B18, 5' end.DH842339|Mus musculus domesticus DNA, BAC clone: B6Ng01-005B18, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(5,379,675 - 5,380,834)(5,265,737 - 5,266,686)
sequence
gaattcctgtcctgacatccttcaatgatgaacagtgatttggaagcata
agccaaataaaacctttcctccccaagttattttggccatgatgtttaaa
caaagcagtgataaccctaactaagacacgtggtgtgccaattctcaaga
tttaatatttaggcatatttgagagcttaaaaacaaatatccaattcact
tgagcttgatttattttcattgtagtcaccaaactgtagcatcctaagag
cctcttcatgtactgtgtcaggcttattgagtgtattgaatttttctgca
ataaaagtatcttgtaacaggaaatttgaattatgtggcagaaatgaacc
ctggaagctattgtttatttaaagtcgtttgggtttaacattatcactga
agatgcaaagtgagttttcaactaagcaaaatacaattacccagtccatt
atctcttggaatctcatagcctcaaaacctcagctgtcatcaaattcaac
ctccaggctagtgcagaagcccactccccacctggctggctctttcgctt
ccgaagccaggctgctctttcctacctagcacagatgtcaatgaagtaaa
tcattgttaactcttagttgcctccaactccctgacacttttgtttattg
agaccatctatgtttcctaagaacctcaaccaagaacaggttctaccctc
atgagtaccgaatgtattaccttctttctgtgcatctgtcctgtgactga
ataaattagaatcacctctactatttagtctttttgcattcacatcaaat
ttctcctccctctgctagaggcctcacatgacttgattctcactgtattc
atcctaactaccttttctctagctaccaataatcccaaagactttcaaat
acttctatctttaagaagactctatggttccaggatattcacatggcgct
gagtttccactttgaaatgatgacagccttctattgctatagtattgtgt
catttgtcacatgtgtcttcagttgtgaaataacttttgatagacatgtc
ttcagacagtgtctgtccactttaatgctccacatcaaattctcccactt
catggttgaatgatgaaagaagacttgatttttgtgttggaatg
gaattccttggcttgcaatataagagcctcatagtctctcccttccttcc
acatacagatgactgcaaacaggagaaagacaaggatgagggagctgagt
tgtatgtatcaagttggtatgaatcataaggaaaggtatgtacaggagag
ctagtgttccaagcaggaaccatgcctgcttctggctaaccctttggggc
tgttggccctccaggtccttaggaagcagcactattctccatgggaaaga
ggtttactttattaggtctggaggccaaggctcattttcctcaagatgat
cagaagccatctgaaggctgtgttaagaccctggtgtgtatcaactcatc
tcattcctgcagcaaatactccattcggtctgccccactgacctctgcat
cctattggctgcaggcatttcctctctagtccaggggaaaaaaaagcgct
actcttcagtcctggaaaagtttgcaactggctcactgtcatttcctcta
acactacatctgtcaggatgctcagtgatattcttctctgcctgaaaaca
ttctagttctcaggacttgcagtttttcaatcttctctattagaggtgac
tgtgtctcagctgcttgctcacaaggaaataactctgatttccttatttc
caaagaaatctacccaaccaataacccccgtttcagacatcctccttcca
gtcacaacatcagcctttggaacttacttgtatgactatctcaaccctaa
caatcttctctgaatgcccccctctgcctccctcgcctcacttcccttct
gattgtcataagtttctttttgcttttgttttgtttatttttttttttgg
ctgtggatttagatttttattttaaatgtttcccttccttccct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr15_5379675_5380834
seq2: B6Ng01-005B18.b_47_1190 (reverse)

seq1  CATTCAAAACAC-AACATCAAGTCCTTTCTTTTCATTTCATCTCAACCCA  49
      |||||  ||||| || ||||||||  ||| |||||  |||| |||| |||
seq2  CATTC-CAACACAAAAATCAAGTC--TTC-TTTCA--TCAT-TCAA-CCA  42

seq1  TGAAAGTGGAGAATTTGATGTGGAGCATTTAAGTGGACAGACAACCTGGT  99
      ||||   |||||||||||||||||||||| |||||||||||||  |||  
seq2  TGAAGTGGGAGAATTTGATGTGGAGCATTAAAGTGGACAGACA--CTG--  88

seq1  TCTTGAAGACATGTCTTATCAAAAGGTTATTTCAC-ACTGAAGAACACCA  148
      || |||||||||||| |||||||| |||||||||| ||||||| ||| ||
seq2  TC-TGAAGACATGTC-TATCAAAA-GTTATTTCACAACTGAAG-ACA-CA  133

seq1  TGGTGACAAATGACACAATACTATAGCAATAGAAGGCTGTCATTCATTTC  198
      | |||||||||||||||||||||||||||||||||||||||| |||||||
seq2  T-GTGACAAATGACACAATACTATAGCAATAGAAGGCTGTCA-TCATTTC  181

seq1  AAAGTGGAAACTCAGCGCCATGTGAATATCCTGGAACCATAGAGTCTTCT  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTGGAAACTCAGCGCCATGTGAATATCCTGGAACCATAGAGTCTTCT  231

seq1  TATAGATAG-AGTATTTGAAAGTCTTTGGGATTATTGGTAGCTAGAG-AA  296
      || |||||| ||||||||||||||||||||||||||||||||||||| ||
seq2  TAAAGATAGAAGTATTTGAAAGTCTTTGGGATTATTGGTAGCTAGAGAAA  281

seq1  AGGTAGTTAGGATGAAATACAGTGAGAATCAAGTCATGTGAGGCCTCTAG  346
      |||||||||||||| |||||||||||||||||||||||||||||||||||
seq2  AGGTAGTTAGGATG-AATACAGTGAGAATCAAGTCATGTGAGGCCTCTAG  330

seq1  CAGAGGGAGGAGAAATTTGATGTGAATGCAAAAAGACTAAATAGTAGAGG  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGGGAGGAGAAATTTGATGTGAATGCAAAAAGACTAAATAGTAGAGG  380

seq1  TGATTCTAATTTATTCAGTCACAGGACAGATGCACAGAAAGAAGGTAATA  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATTCTAATTTATTCAGTCACAGGACAGATGCACAGAAAGAAGGTAATA  430

seq1  CATTCGGTACTCATGAGGGTAGAACCTGTTCTTGGTTGAGGTTCTTAGGA  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTCGGTACTCATGAGGGTAGAACCTGTTCTTGGTTGAGGTTCTTAGGA  480

seq1  AACATAGATGGTCTCAATAAACAAAAGTGTCAGGGAGTTGGAGGCAACTA  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACATAGATGGTCTCAATAAACAAAAGTGTCAGGGAGTTGGAGGCAACTA  530

seq1  AGAGTTAACAATGATTTACTTCATTGACATCTGTGCTAGGTAGGAAAGAG  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGTTAACAATGATTTACTTCATTGACATCTGTGCTAGGTAGGAAAGAG  580

seq1  CAGCCTGGCTTCGGAAGCGAAAGAGCCAGCCAGGTGGGGAGTGGGCTTCT  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCCTGGCTTCGGAAGCGAAAGAGCCAGCCAGGTGGGGAGTGGGCTTCT  630

seq1  GCACTAGCCTGGAGGTTGAATTTGATGACAGCTGAGGTTTTGAGGCTATG  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACTAGCCTGGAGGTTGAATTTGATGACAGCTGAGGTTTTGAGGCTATG  680

seq1  AGATTCCAAGAGATAATGGACTGGGTAATTGTATTTTGCTTAGTTGAAAA  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATTCCAAGAGATAATGGACTGGGTAATTGTATTTTGCTTAGTTGAAAA  730

seq1  CTCACTTTGCATCTTCAGTGATAATGTTAAACCCAAACGACTTTAAATAA  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCACTTTGCATCTTCAGTGATAATGTTAAACCCAAACGACTTTAAATAA  780

seq1  ACAATAGCTTCCAGGGTTCATTTCTGCCACATAATTCAAATTTCCTGTTA  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAATAGCTTCCAGGGTTCATTTCTGCCACATAATTCAAATTTCCTGTTA  830

seq1  CAAGATACTTTTATTGCAGAAAAATTCAATACACTCAATAAGCCTGACAC  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGATACTTTTATTGCAGAAAAATTCAATACACTCAATAAGCCTGACAC  880

seq1  AGTACATGAAGAGGCTCTTAGGATGCTACAGTTTGGTGACTACAATGAAA  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTACATGAAGAGGCTCTTAGGATGCTACAGTTTGGTGACTACAATGAAA  930

seq1  ATAAATCAAGCTCAAGTGAATTGGATATTTGTTTTTAAGCTCTCAAATAT  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAATCAAGCTCAAGTGAATTGGATATTTGTTTTTAAGCTCTCAAATAT  980

seq1  GCCTAAATATTAAATCTTGAGAATTGGCACACCACGTGTCTTAGTTAGGG  1046
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTAAATATTAAATCTTGAGAATTGGCACACCACGTGTCTTAGTTAGGG  1030

seq1  TTATCACTGCTTTGTTTAAACATCATGGCCAAAATAACTTGGGGAGGAAA  1096
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATCACTGCTTTGTTTAAACATCATGGCCAAAATAACTTGGGGAGGAAA  1080

seq1  GGTTTTATTTGGCTTATGCTTCCAAATCACTGTTCATCATTGAAGGATGT  1146
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTTTATTTGGCTTATGCTTCCAAATCACTGTTCATCATTGAAGGATGT  1130

seq1  CAGGACAGGAATTC  1160
      ||||||||||||||
seq2  CAGGACAGGAATTC  1144

seq1: chr15_5265737_5266686
seq2: B6Ng01-005B18.g_68_961

seq1  GAATTCCTTGGCTTGCAATATAAGAGCCTCATAGTCTCTCCCTTCCTTCC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTTGGCTTGCAATATAAGAGCCTCATAGTCTCTCCCTTCCTTCC  50

seq1  ACATACAGATGACTGCAAACAGGAGAAAGACAAGGATGAGGGAGCTGAGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATACAGATGACTGCAAACAGGAGAAAGACAAGGATGAGGGAGCTGAGT  100

seq1  TGTATGTATCAAGTTGGTATGAATCATAAGGAAAGGTATGTACAGGAGAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTATGTATCAAGTTGGTATGAATCATAAGGAAAGGTATGTACAGGAGAG  150

seq1  CTAGTGTTCCAAGCAGGAACCATGCCTGCTTCTGGCTAACCCTTTGGGGC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGTGTTCCAAGCAGGAACCATGCCTGCTTCTGGCTAACCCTTTGGGGC  200

seq1  TGTTGGCCCTCCAGGTCCTTAGGAAGCAGCACTATTCTCCATGGGAAAGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTGGCCCTCCAGGTCCTTAGGAAGCAGCACTATTCTCCATGGGAAAGA  250

seq1  GGTTTACTTTATTAGGTCTGGAGGCCAAGGCTCATTTTCCTCAAGATGAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTTACTTTATTAGGTCTGGAGGCCAAGGCTCATTTTCCTCAAGATGAT  300

seq1  CAGAAGCCATCTGAAGGCTGTGTTAAGACCCTGGTGTGTATCAACTCATC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAAGCCATCTGAAGGCTGTGTTAAGACCCTGGTGTGTATCAACTCATC  350

seq1  TCATTCCTGCAGCAAATACTCCATTCGGTCTGCCCCACTGACCTCTGCAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTCCTGCAGCAAATACTCCATTCGGTCTGCCCCACTGACCTCTGCAT  400

seq1  CCTATTGGCTGCAGGCATTTCCTCTCTAGTCCAGGGGAAAAAAAAGCGCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTATTGGCTGCAGGCATTTCCTCTCTAGTCCAGGGGAAAAAAAAGCGCT  450

seq1  ACTCTTCAGTCCTGGAAAAGTTTGCAACTGGCTCACTGTCATTTCCTCTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCTTCAGTCCTGGAAAAGTTTGCAACTGGCTCACTGTCATTTCCTCTA  500

seq1  ACACTACATCTGTCAGGATGCTCAGTGATATTCTTCTCTGCCTGAAAACA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACTACATCTGTCAGGATGCTCAGTGATATTCTTCTCTGCCTGAAAACA  550

seq1  TTCTAGTTCTCAGGACTTGCAGTTTTTCAATCTTCTCTATTAGAGGTGAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTAGTTCTCAGGACTTGCAGTTTTTCAATCTTCTCTATTAGAGGTGAC  600

seq1  TGTGTCTCAGCTGCTTGCTCACAAGGAAATAACTCTGATTTCCTTATTTC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTCTCAGCTGCTTGCTCACAAGGAAATAACTCTGATTTCCTTATTTC  650

seq1  CAAAGAAATCTACCCAACCAATAACCCCCGTTTCAGACATCCTCCTTCCA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGAAATCTACCCAACCAATAACCCCCGTTTCAGACATCCTCCTTCCA  700

seq1  GTCACAACATCAGCCTTTGGAACTTACTTGTATGACTATCTCAACCCTAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCACAACATCAGCCTTTGGAACTTACTTGTATGACTATCTCAACCCTAA  750

seq1  CAATCTTCTCTGAATGCCCCCCTCTGCCTCCCTCGCCTCACTT-CCTTCT  799
      ||||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  CAATCTTCTCTGAATGCCCCCCTCTGCCTCCCTCGCCTCACTTCCCTTCT  800

seq1  GATTGTCATAAGTTTCTTTTTGCTTTTGTTTTTGTTTA-TTTTTTTTTTG  848
      |||||||||||||||||||||||||||| ||||||||| |||||||||||
seq2  GATTGTCATAAGTTTCTTTTTGCTTTTG-TTTTGTTTATTTTTTTTTTTG  849

seq1  GCTGTGGATTTAGATTTTTATTTTTAAAATGTTT-CCTTCCTTCCTTCCT  897
      ||||||||||||||||||||||||  |||||||| |||||||||| |   
seq2  GCTGTGGATTTAGATTTTTATTTT--AAATGTTTCCCTTCCTTCCCT---  894

seq1  TCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTC  947
                                                        
seq2  --------------------------------------------------  894

seq1  CCT  950
         
seq2  ---  894