BAC Information

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BAC

Clone NameB6Ng01-005K05
Chromosome15 (Build37)
Map Location 75,778,294 - 75,987,197
singlet/doubletdoublet
Overlap geneZfp623, Eif2s3x-ps1, Zfp707, 2410075B13Rik, Mapk15, AA409316, K230010J24Rik, Scrib, 2410104I19Rik, Nrbp2, Eppk1, BC024139
Upstream geneLy6e, Ly6i, LOC666240, LOC100041528, Ly6a, Ly6c, LOC546642, EG625737, LOC100041546, I830127L07Rik, LOC100041070, LOC546644, LOC100041087, BC025446, LOC100041092, Ly6f, LOC100041652, LOC100041107, 9030619P08Rik, Ly6h, Gpihbp1, Zfp41, 2810039B14Rik, Top1mt, Rhpn1, Mafa, Zc3h3, LOC672572, Gsdmdc1, Naprt1, Eef1d, Tigd5, Pycrl, Tsta3
Downstream genePlec1, LOC671535, Grina, Spatc1, LOC100041269, Oplah, Exosc4, Gpaa1, Cyc1, Sharpin, Maf1, EG626280, Brp16, Tssk5, Bop1, Scx, Hsf1, Dgat1, Scrt1, LOC666497, EG666504, Fbxl6, Gpr172b, Adck5, Cpsf1, Slc39a4, Vps28, Nfkbil2, Cyhr1, Kifc2, Foxh1, Ppp1r16a, Gpt1, Mfsd3, Recql4, Lrrc14, Lrrc24, C030006K11Rik, D15Wsu169e, Zfp251, Zfp7, Commd5, Rpl8, Zfp647, 1110038F14Rik, Mb, Apol6, Rbm9
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-005K05.bB6Ng01-005K05.g
ACCDH842719DH842720
length1,101818
definitionDH842719|Mus musculus domesticus DNA, BAC clone: B6Ng01-005K05, 5' end.DH842720|Mus musculus domesticus DNA, BAC clone: B6Ng01-005K05, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(75,986,099 - 75,987,197)(75,778,294 - 75,779,110)
sequence
gaattcaccagccttgattctcacacattccatagcctgttaggaggaaa
gtctgaatcctccaaatgacaagagtcagcaagatatccaggagggtggt
gcagtatcaagagagggcatttgctgtaggactggatggggccaccgttt
aaaggactattagccacagaaggtcagagaagaatagatgggagtcatta
aggaccttaggctcgtcttcccttccctgggttcctctttcaggtttggt
caaaagatgttgggccctggggccctgggcgacactggatggccaggctg
ctggctgggcccctgtcttcaccctcacatctcaccagttgaggccctgc
ctggccctccttgaggacaggggttgcaagagacagatcgggatatatgc
taaaagcacttcaaatttctcccctggcctgacctttcttctgtcttgga
ggccagctcagagctgctccagcaaggacccctgggctgaggagccgcag
agctgcagagtctcagagtcgcggagtcgcagagccacctctgagatgca
ctgttgtgtcactgacttctcccttagttgtttcatgacttcatgtgtgt
atttttaacaaagcagccaggcgctgttatgagacgcgtccagcagaggg
tagcaaaggctcttgttccaacaaactcaagggctcctggctcatgcgtg
ttgccaacagaagaaagaggggtattgtgttggatctgagaggatccacc
tcagctctttgcaggaccaaaggcctgggcagcctgacattcatctcaaa
caacccgtgcccttgacacttgacacacagctgaccagggtctctggaga
gacgtcgctgtctggggacagcaaacatccattgagtgcatcctggaaca
gactcttcctcacacacaagatcctatcgcccaacacgtggactccaggc
agaaagctttaggaaactctttgataggagttcttctaactggataactc
tcttctcttttttagaagggtcttctatggaagagagatgggccttcgaa
ctcatcttactcttgcctctttgagttctgagaattaagggcttgggcca
c
gaattcacacaggagaaaggccctatgagtgtaacgagtgtgggaaatcc
ttcattcggagttcaagccttatccgccattaccagatccacacagaagt
taaacagtatgagtgcagagactgcggcaaagccttccgacaccgctcgg
acctcatcgagcaccagaggattcacactggagagcggcccttcgagtgt
caggagtgtgggaaggcctttattcggagctcgaaactcattcagcacca
gcggattcacacgggagagcggccttacgtgtgcaacgagtgtgggaagc
gtttcagtcagacatccaacttcacccagcaccagcgaatccacagtgga
gaaaaactctatgagtgtaacgaatgtgggaaggcgttctttctgagctc
atacctcatacgacaccagaagatccacactggtgaacgggtgtatgagt
gtaaggagtgtgggaaggctttcctgcagaaggcccacctcactgagcat
cagaagatccacactggagacagaccctttgagtgcaaagactgtgggaa
agccttcatccagagttctaagctattgctgcatcagattgttcataccg
gggagaagccctatgtgtgcagttactgcgggaaaggctttattcagaga
tccaacttccttcagcaccagaagatgcacacggaagagaagcgctacac
gtatagccaacttgggaaagatcttaccccatccccagatcttgtccacc
aggaggatctttccctgagtgagaccttccgtttatttaggagagaggtc
ttcagatcgggagtgtgg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr15_75986099_75987197
seq2: B6Ng01-005K05.b_41_1141 (reverse)

seq1  GTGGCACAAGCCTTTAA-TCTCAGCACTC-AAGAGGC-AGAGGTAGGTGA  47
      ||||| |||||| |||| |||||| |||| ||||||| ||||  || |||
seq2  GTGGCCCAAGCCCTTAATTCTCAGAACTCAAAGAGGCAAGAGTAAGATGA  50

seq1  GTTCG-AGGCCCATCTCCTCTCCATAGTGAGACCCTGTCTTAAAAAAGAG  96
      ||||| |||||||||||   |||||||  ||||||| || ||||||||||
seq2  GTTCGAAGGCCCATCTCTCTTCCATAG-AAGACCCT-TC-TAAAAAAGAG  97

seq1  AGAGA-AGTTAT-CAGTTAGAAGAACTCCTATTCAATGAGTTTCCTAAAG  144
      | ||| |||||| |||||||||||||||||| |||| |||||||||||||
seq2  A-AGAGAGTTATCCAGTTAGAAGAACTCCTA-TCAAAGAGTTTCCTAAAG  145

seq1  CTTTTCTGCCTGGGGTCACGGTGTTTGGCGATATGGAATCTTGTGTGTGA  194
      | ||||||||||| |||   ||||| |||||||  | |||||||||||||
seq2  C-TTTCTGCCTGGAGTCCACGTGTTGGGCGATA--GGATCTTGTGTGTGA  192

seq1  GG-AGAGTCTGTTCCAGGATGCACTCACTGGCTGTTTGCTGTCCCCAGAC  243
      || |||||||||||||||||||||||| ||| ||||||||||||||||||
seq2  GGAAGAGTCTGTTCCAGGATGCACTCAATGGATGTTTGCTGTCCCCAGAC  242

seq1  AGCGACGTCTCTCCAGAGACCCTGGTCAGCTGTGTGTTCAAGTGTCAAGG  293
      |||||||||||||||||||||||||||||||||||| |||||||||||||
seq2  AGCGACGTCTCTCCAGAGACCCTGGTCAGCTGTGTG-TCAAGTGTCAAGG  291

seq1  GCACGGGTTGTTTGAGATG-ATGTCAGGCTGCCCAGGCCTTTGGTCCTGC  342
      ||||||||||||||||||| ||||||||||||||||||||||||||||||
seq2  GCACGGGTTGTTTGAGATGAATGTCAGGCTGCCCAGGCCTTTGGTCCTGC  341

seq1  -AAGAGCTGAGGTGGCTCCTCTCAGATCCAACACAATA-CCCTCTTTCTT  390
       |||||||||||||| |||||||||||||||||||||| |||||||||||
seq2  AAAGAGCTGAGGTGGATCCTCTCAGATCCAACACAATACCCCTCTTTCTT  391

seq1  CTGTTGGCAACACGCATGAGCCAGGAGCCCTTGAGTTTGTTGGAACAAGA  440
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTTGGCAACACGCATGAGCCAGGAGCCCTTGAGTTTGTTGGAACAAGA  441

seq1  GCCTTTGCTACCCTCTGCTGGACGCGTCTCATAACAGCGCCTGGCTGCTT  490
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTTTGCTACCCTCTGCTGGACGCGTCTCATAACAGCGCCTGGCTGCTT  491

seq1  TGTT-AAAATACACACATGAAGTCATGAAACAACTAAGGGAGAAGTCAGT  539
      |||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTAAAAATACACACATGAAGTCATGAAACAACTAAGGGAGAAGTCAGT  541

seq1  GACACAACAGTGCATCTCAGAGGTGGCTCTGCGACTCCGCGACTCTGAGA  589
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACACAACAGTGCATCTCAGAGGTGGCTCTGCGACTCCGCGACTCTGAGA  591

seq1  CTCTGCAGCTCTGCGGCTCCTCAGCCCAGGGGTCCTTGCTGGAGCAGCTC  639
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGCAGCTCTGCGGCTCCTCAGCCCAGGGGTCCTTGCTGGAGCAGCTC  641

seq1  TGAGCTGGCCTCCAAGACAGAAGAAAGGTCAGGCCAGGGGAGAAATTTGA  689
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGCTGGCCTCCAAGACAGAAGAAAGGTCAGGCCAGGGGAGAAATTTGA  691

seq1  AGTGCTTTTAGCATATATCCCGATCTGTCTCTTGCAACCCCTGTCCTCAA  739
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGCTTTTAGCATATATCCCGATCTGTCTCTTGCAACCCCTGTCCTCAA  741

seq1  GGAGGGCCAGGCAGGGCCTCAACTGGTGAGATGTGAGGGTGAAGACAGGG  789
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGGGCCAGGCAGGGCCTCAACTGGTGAGATGTGAGGGTGAAGACAGGG  791

seq1  GCCCAGCCAGCAGCCTGGCCATCCAGTGTCGCCCAGGGCCCCAGGGCCCA  839
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCAGCCAGCAGCCTGGCCATCCAGTGTCGCCCAGGGCCCCAGGGCCCA  841

seq1  ACATCTTTTGACCAAACCTGAAAGAGGAACCCAGGGAAGGGAAGACGAGC  889
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATCTTTTGACCAAACCTGAAAGAGGAACCCAGGGAAGGGAAGACGAGC  891

seq1  CTAAGGTCCTTAATGACTCCCATCTATTCTTCTCTGACCTTCTGTGGCTA  939
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAGGTCCTTAATGACTCCCATCTATTCTTCTCTGACCTTCTGTGGCTA  941

seq1  ATAGTCCTTTAAACGGTGGCCCCATCCAGTCCTACAGCAAATGCCCTCTC  989
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGTCCTTTAAACGGTGGCCCCATCCAGTCCTACAGCAAATGCCCTCTC  991

seq1  TTGATACTGCACCACCCTCCTGGATATCTTGCTGACTCTTGTCATTTGGA  1039
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGATACTGCACCACCCTCCTGGATATCTTGCTGACTCTTGTCATTTGGA  1041

seq1  GGATTCAGACTTTCCTCCTAACAGGCTCTGGAATGTGTGAGAATCAAGGC  1089
      ||||||||||||||||||||||||||| ||||||||||||||||||||||
seq2  GGATTCAGACTTTCCTCCTAACAGGCTATGGAATGTGTGAGAATCAAGGC  1091

seq1  TGGTGAATTC  1099
      ||||||||||
seq2  TGGTGAATTC  1101

seq1: chr15_75778294_75779110
seq2: B6Ng01-005K05.g_69_886

seq1  GAATTCACACAGGAGAAAGGCCCTATGAGTGTAACGAGTGTGGGAAATCC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACACAGGAGAAAGGCCCTATGAGTGTAACGAGTGTGGGAAATCC  50

seq1  TTCATTCGGAGTTCAAGCCTTATCCGCCATTACCAGATCCACACAGAAGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATTCGGAGTTCAAGCCTTATCCGCCATTACCAGATCCACACAGAAGT  100

seq1  TAAACAGTATGAGTGCAGAGACTGCGGCAAAGCCTTCCGACACCGCTCGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAACAGTATGAGTGCAGAGACTGCGGCAAAGCCTTCCGACACCGCTCGG  150

seq1  ACCTCATCGAGCACCAGAGGATTCACACTGGAGAGCGGCCCTTCGAGTGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTCATCGAGCACCAGAGGATTCACACTGGAGAGCGGCCCTTCGAGTGT  200

seq1  CAGGAGTGTGGGAAGGCCTTTATTCGGAGCTCGAAACTCATTCAGCACCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGAGTGTGGGAAGGCCTTTATTCGGAGCTCGAAACTCATTCAGCACCA  250

seq1  GCGGATTCACACGGGAGAGCGGCCTTACGTGTGCAACGAGTGTGGGAAGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGGATTCACACGGGAGAGCGGCCTTACGTGTGCAACGAGTGTGGGAAGC  300

seq1  GTTTCAGTCAGACATCCAACTTCACCCAGCACCAGCGAATCCACAGTGGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTCAGTCAGACATCCAACTTCACCCAGCACCAGCGAATCCACAGTGGA  350

seq1  GAAAAACTCTATGAGTGTAACGAATGTGGGAAGGCGTTCTTTCTGAGCTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAAACTCTATGAGTGTAACGAATGTGGGAAGGCGTTCTTTCTGAGCTC  400

seq1  ATACCTCATACGACACCAGAAGATCCACACTGGTGAACGGGTGTATGAGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACCTCATACGACACCAGAAGATCCACACTGGTGAACGGGTGTATGAGT  450

seq1  GTAAGGAGTGTGGGAAGGCTTTCCTGCAGAAGGCCCACCTCACTGAGCAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAGGAGTGTGGGAAGGCTTTCCTGCAGAAGGCCCACCTCACTGAGCAT  500

seq1  CAGAAGATCCACACTGGAGACAGACCCTTTGAGTGCAAAGACTGTGGGAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAAGATCCACACTGGAGACAGACCCTTTGAGTGCAAAGACTGTGGGAA  550

seq1  AGCCTTCATCCAGAGTTCTAAGCTATTGCTGCATCAGATTGTTCATACCG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCTTCATCCAGAGTTCTAAGCTATTGCTGCATCAGATTGTTCATACCG  600

seq1  GGGAGAAGCCCTATGTGTGCAGTTACTGCGGGAAAGGCTTTATTCAGAGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAGAAGCCCTATGTGTGCAGTTACTGCGGGAAAGGCTTTATTCAGAGA  650

seq1  TCCAACTTCCTTCAGCACCAGAAGATGCACACGGAAGAGAAGCGCTACAC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAACTTCCTTCAGCACCAGAAGATGCACACGGAAGAGAAGCGCTACAC  700

seq1  GTATAGCCAACTTGGGAAAGATCTTACCCCACCCCCAGATCTTGTCCACC  750
      ||||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  GTATAGCCAACTTGGGAAAGATCTTACCCCATCCCCAGATCTTGTCCACC  750

seq1  AGGAGGATCTTTCCCTGAGTGAGACC-TCCGTTCATTTAGGAGAGAGGTC  799
      |||||||||||||||||||||||||| |||||| ||||||||||||||||
seq2  AGGAGGATCTTTCCCTGAGTGAGACCTTCCGTTTATTTAGGAGAGAGGTC  800

seq1  TACAGATCGGGAGTGTTG  817
      | |||||||||||||| |
seq2  TTCAGATCGGGAGTGTGG  818