BAC Information

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BAC

Clone NameB6Ng01-005K15
Chromosome15 (Build37)
Map Location 74,600,561 - 74,705,414
singlet/doubletdoublet
Overlap geneD730001G18Rik, Ly6k, Gml, Hemt1, Cyp11b1, Cyp11b2
Upstream geneGm628, LOC100041273, EG625276, LOC100040966, EG666113, LOC100041307, LOC100040984, Bai1, 1700016M24Rik, Arc, Jrk, 4933427E11Rik, Psca, 4930572J05Rik, Slurp1, Lypd2, 2300005B03Rik, Lynx1, Ly6d
Downstream gene2010109I03Rik, LOC625653, Ly6e, Ly6i, LOC666240, LOC100041528, Ly6a, Ly6c, LOC546642, EG625737, LOC100041546, I830127L07Rik, LOC100041070, LOC546644, LOC100041087, BC025446, LOC100041092, Ly6f, LOC100041652, LOC100041107, 9030619P08Rik, Ly6h, Gpihbp1, Zfp41, 2810039B14Rik, Top1mt, Rhpn1, Mafa, Zc3h3, LOC672572, Gsdmdc1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-005K15.bB6Ng01-005K15.g
ACCDH842738DH842739
length8081,074
definitionDH842738|Mus musculus domesticus DNA, BAC clone: B6Ng01-005K15, 5' end.DH842739|Mus musculus domesticus DNA, BAC clone: B6Ng01-005K15, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(74,704,646 - 74,705,414)(74,600,561 - 74,601,650)
sequence
gaattctcaacacctggggcaatcattaacactacactttcatcattgaa
ttcctcctctgggttgttcttgtcagtgccctgaatggagtgtcacattt
tcagtctggcccgggaaaagaccaaggcagcaaggataaggatgtctgct
gttaaccagagagttcctaatacttccttccttaggtctcagagagaaga
gcattctgtccagagagataggtaaatgcccttacacaggcttaaggctt
attcatttcactatttaggttttttttttttttttttttttttttttttt
tttttttgaaaaagggcctcaattgacctggaatttatgacaaaactcag
gatggcctggagtttgcaggaatctatctatcttaaccttctgaatgctg
acattgcagtcatgagccaccctggggtggtttgaataggtatgggccct
cataaacccctgtgtttgaatgcttggcccccagggagctgtactattaa
taggggtggcctcattggagtatgtgttgccttgttggaggaagtgtatc
actgtggaggggggccttgaagtcttctatatgcacaagttttgcccagt
aaagctcaatcttctgctgcctatgaataagatgtagaactcaactcctc
cagcaccatgtttgcctgcatgctgccatgtttcccccctgatgataatg
gactaaacccctgaaactataagcccgcccaattgaatgtttttcttttt
aaaactgctttgggaatggggctcctcacagaaaaaaactctaagatccc
cccccccc
gaattctatctccagcctcagttgtaaagagtaaagaattaggaaacagt
gaagagacatgtcttttagcctctgggcaagatgcagaagagcagggtga
ggacctggggctggataggtaagctagcaggcccggcagctctcagaggc
ctggagacagggaaaactcagggctacaagccccaaacctgagcaagctc
ctaggctgccccatacgggacagagcaggctctcgcgagaccagagcagg
tatgattgtgttagatgtcaacttgaaagaatcgccattcacttgggaga
cgagactccagccatatccatgaaggattatcctgattgtattatttgag
gtgagaagacccaccatggttgggatcccgaattgtagaagtagagaaaa
gaaaactgactaggctgtgagagggttcaggagttaagagcactggctac
tcatccagaccagcctggtttggatgccagcacccacatggcagctcaca
accatgtagctccagttccaagggatctgatattctttttctgaccttcc
tgggtaccaggccacatatgtggtatgcaaacatgcatgcagagaaaaca
ctaatatgcataaaagaaactatttttcaaagggaactgggcagcgagca
tgtgcttctctgtttttctggactgtggacgcagtgtgatctgatgcttc
ggtcctggctgccttgacctcttcaccttgatgaactggaccttcaacgg
cgagcccaaatcaactttctctccagctgttttttgtcagagtgttttat
tacagggacaggcaaagacagcaggggtagggaataaaacgctccagact
tgaagggctctgctctgcccctcaagaagagccccttccctcccccaaag
agatgtgctttgagtggcctcaagtactgtgactgttcagaagctgaggt
tgttgtgctgccacacaaagttggactttggggaccaggccctgtgaaga
tgcaatccttcaccagttagcagcccagggactcctatctcataaagact
ctctagggaaacccttctagtttg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr15_74704646_74705414
seq2: B6Ng01-005K15.b_32_796 (reverse)

seq1  TACCAAAGCAGCTCTTATAAAAGAAAAACATTCAATTGGGGCTGGCTTAT  50
      | ||||||||| | ||| ||||||||||||||||||| |||| |||||||
seq2  TCCCAAAGCAG-TTTTA-AAAAGAAAAACATTCAATT-GGGCGGGCTTAT  47

seq1  AGTTTCAGAGGTTTAGTCCATTATCATCATGGTGGGAAGCATGGCAGCAT  100
      |||||||| |||||||||||||||||||| || ||||| |||||||||||
seq2  AGTTTCAGGGGTTTAGTCCATTATCATCA-GGGGGGAAACATGGCAGCAT  96

seq1  GCAGGCAGACATGGTGCTGGAGGAGCTGAGTTCTACATCTTGATTCATAG  150
      ||||||| ||||||||||||||||| ||||||||||||||| ||||||||
seq2  GCAGGCAAACATGGTGCTGGAGGAGTTGAGTTCTACATCTT-ATTCATAG  145

seq1  GCAGCAGAAGACTGAGCCTTACTGGGCATAACTTGTGCATATAGAAGACT  200
      ||||||||||| ||||| |||||||||| |||||||||||||||||||||
seq2  GCAGCAGAAGATTGAGCTTTACTGGGCAAAACTTGTGCATATAGAAGACT  195

seq1  TCAAGGCCCACCTCCACAGTGATACACTTCCTCCAACAAGGCAACACATA  250
      ||||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  TCAAGGCCCCCCTCCACAGTGATACACTTCCTCCAACAAGGCAACACATA  245

seq1  CTCCAATGAGGCCACACCTACTAATAGTACAGCTCCCTGTGGGCCAAGCA  300
      ||||||||||||||| |||| |||||||||||||||||| ||||||||||
seq2  CTCCAATGAGGCCACCCCTATTAATAGTACAGCTCCCTGGGGGCCAAGCA  295

seq1  TTCAAACACATGGGTCTATGAGGGACCATACCTATTCAAACCACCACAGG  350
      |||||||||| |||| |||||||| |||||||||||||||||||| ||||
seq2  TTCAAACACAGGGGTTTATGAGGGCCCATACCTATTCAAACCACCCCAGG  345

seq1  GTGGCTCATGACTGCAATGTCAGCATTCAGAAGGCTAAGATAGATAGATT  400
      |||||||||||||||||||||||||||||||||| |||||||||||||||
seq2  GTGGCTCATGACTGCAATGTCAGCATTCAGAAGGTTAAGATAGATAGATT  395

seq1  CCTGCAAACTCCAGGCCATCCTGAGCTTTGTCATAAATTCCAGGTCAATT  450
      ||||||||||||||||||||||||| ||||||||||||||||||||||||
seq2  CCTGCAAACTCCAGGCCATCCTGAGTTTTGTCATAAATTCCAGGTCAATT  445

seq1  GAGGCCCTGTCTC-AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA  499
      |||||||| | || ||||||||||||||||||||||||||||||||||||
seq2  GAGGCCCTTTTTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA  495

seq1  ACCTAAATAGTGAAATGAATAAGCCTTAAGCCTGTGTAAGGGCATTTACC  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTAAATAGTGAAATGAATAAGCCTTAAGCCTGTGTAAGGGCATTTACC  545

seq1  TATCTCTCTGGACAGAATGCTCTTCTCTCTGAGACCTAAGGAAGGAAGTA  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCTCTCTGGACAGAATGCTCTTCTCTCTGAGACCTAAGGAAGGAAGTA  595

seq1  TTAGGAACTCTCTGGTTAACAGCAGACATCCTTATCCTTGCTGCCTTGGT  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGGAACTCTCTGGTTAACAGCAGACATCCTTATCCTTGCTGCCTTGGT  645

seq1  CTTTTCCCGGGCCAGACTGAAAATGTGACACTCCATTCAGGGCACTGACA  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTCCCGGGCCAGACTGAAAATGTGACACTCCATTCAGGGCACTGACA  695

seq1  AGAACAACCCAGAGGAGGAATTCAATGATGAAAGTGTAGTGTTAATGATT  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAACAACCCAGAGGAGGAATTCAATGATGAAAGTGTAGTGTTAATGATT  745

seq1  GCCCCAGGTGTTGAGAATTC  769
      ||||||||||||||||||||
seq2  GCCCCAGGTGTTGAGAATTC  765

seq1: chr15_74600561_74601650
seq2: B6Ng01-005K15.g_67_1140

seq1  GAATTCTATCTCCAGCCTCAGTTGTAAAGAGTAAAGAATTAGGAAACAGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTATCTCCAGCCTCAGTTGTAAAGAGTAAAGAATTAGGAAACAGT  50

seq1  GAAGAGACATGTCTTTTAGCCTCTGGGCAAGATGCAGAAGAGCAGGGTGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGAGACATGTCTTTTAGCCTCTGGGCAAGATGCAGAAGAGCAGGGTGA  100

seq1  GGACCTGGGGCTGGATAGGTAAGCTAGCAGGCCCGGCAGCTCTCAGAGGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACCTGGGGCTGGATAGGTAAGCTAGCAGGCCCGGCAGCTCTCAGAGGC  150

seq1  CTGGAGACAGGGAAAACTCAGGGCTACAAGCCCCAAACCTGAGCAAGCTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGAGACAGGGAAAACTCAGGGCTACAAGCCCCAAACCTGAGCAAGCTC  200

seq1  CTAGGCTGCCCCATACGGGACAGAGCAGGCTCTCGCGAGACCAGAGCAGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGGCTGCCCCATACGGGACAGAGCAGGCTCTCGCGAGACCAGAGCAGG  250

seq1  TATGATTGTGTTAGATGTCAACTTGAAAGAATCGCCATTCACTTGGGAGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGATTGTGTTAGATGTCAACTTGAAAGAATCGCCATTCACTTGGGAGA  300

seq1  CGAGACTCCAGCCATATCCATGAAGGATTATCCTGATTGTATTATTTGAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGAGACTCCAGCCATATCCATGAAGGATTATCCTGATTGTATTATTTGAG  350

seq1  GTGAGAAGACCCACCATGGTTGGGATCCCGAATTGTAGAAGTAGAGAAAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAGAAGACCCACCATGGTTGGGATCCCGAATTGTAGAAGTAGAGAAAA  400

seq1  GAAAACTGACTAGGCTGTGAGAGGGTTCAGGAGTTAAGAGCACTGGCTAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAACTGACTAGGCTGTGAGAGGGTTCAGGAGTTAAGAGCACTGGCTAC  450

seq1  TCATCCAGACCAGCCTGGTTTGGATGCCAGCACCCACATGGCAGCTCACA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATCCAGACCAGCCTGGTTTGGATGCCAGCACCCACATGGCAGCTCACA  500

seq1  ACCATGTAGCTCCAGTTCCAAGGGATCTGATATTCTTTTTCTGACCTTCC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCATGTAGCTCCAGTTCCAAGGGATCTGATATTCTTTTTCTGACCTTCC  550

seq1  TGGGTACCAGGCCACATATGTGGTATGCAAACATGCATGCAGAGAAAACA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGTACCAGGCCACATATGTGGTATGCAAACATGCATGCAGAGAAAACA  600

seq1  CTAATATGCATAAAAGAAACTA-TTTTCAAAGGGAACTGGGCAGCGAGCA  649
      |||||||||||||||||||||| |||||||||||||||||||||||||||
seq2  CTAATATGCATAAAAGAAACTATTTTTCAAAGGGAACTGGGCAGCGAGCA  650

seq1  TGTGCTTCTCTGTTTTTCTGGACTGTGGACGCAGTGTGATCTGATGCTTC  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGCTTCTCTGTTTTTCTGGACTGTGGACGCAGTGTGATCTGATGCTTC  700

seq1  AGGTCCTGGCTGCCTTGACCTCTTCACCTTGATGAACTGGACCTTCAACG  749
       |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  -GGTCCTGGCTGCCTTGACCTCTTCACCTTGATGAACTGGACCTTCAACG  749

seq1  GCGAGCCCAAATCAACTTTCTCTCCAGCTG-TTTTTGTCAGAGTGTTTTA  798
      |||||||||||||||||||||||||||||| |||||||||||||||||||
seq2  GCGAGCCCAAATCAACTTTCTCTCCAGCTGTTTTTTGTCAGAGTGTTTTA  799

seq1  TTACAGGGACAGGCAAAGACAGCAGGGGTAGGGAATAAAACGCTCCAGAC  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACAGGGACAGGCAAAGACAGCAGGGGTAGGGAATAAAACGCTCCAGAC  849

seq1  TTGAAGGGCTCTGGCTCTGCCCCTCAAGAAGAGCCCCTTCCCTCCCCCCA  898
      |||||||||||| |||||||||||||||||||||||||||||| ||||||
seq2  TTGAAGGGCTCT-GCTCTGCCCCTCAAGAAGAGCCCCTTCCCT-CCCCCA  897

seq1  AGGAGATGTGGCTTTGAGTGGCCTCAGAGTACTGGTGACTGTTCAGAAAG  948
      | ||||||| |||||||||||||||| |||||| |||||||||||| |||
seq2  AAGAGATGT-GCTTTGAGTGGCCTCA-AGTACT-GTGACTGTTCAG-AAG  943

seq1  CTGAGGGTTTGTTGTGCTGCCAACACAAAAGTATGGACTTTTGGGGACCA  998
      ||||||  ||||||||||||| |||| ||||| ||||| |||||||||||
seq2  CTGAGG--TTGTTGTGCTGCC-ACAC-AAAGT-TGGAC-TTTGGGGACCA  987

seq1  GGGCACACTGTGACAGATGCAAACACTTCACCAGTTAGCAGCACCAGGGA  1048
      ||   | |||||| |||||||| | ||||||||||||||||| |||||||
seq2  GG---CCCTGTGA-AGATGCAATC-CTTCACCAGTTAGCAGC-CCAGGGA  1031

seq1  CATCATATCTCAGAAGAGCTCTC-AGGG-AACCCTTCTAGGTTG  1090
      | || ||||||| ||   ||||| |||| ||||||||||| |||
seq2  C-TCCTATCTCATAAAGACTCTCTAGGGAAACCCTTCTAGTTTG  1074