BAC Information

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BAC

Clone NameB6Ng01-005P04
Chromosome15 (Build37)
Map Location 21,969,040 - 22,135,880
singlet/doubletdoublet
Overlap genenone
Upstream geneCdh12, LOC100040351
Downstream geneEG545091, Cdh18
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-005P04.bB6Ng01-005P04.g
ACCDH842943DH842944
length1,1481,127
definitionDH842943|Mus musculus domesticus DNA, BAC clone: B6Ng01-005P04, 5' end.DH842944|Mus musculus domesticus DNA, BAC clone: B6Ng01-005P04, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(22,134,817 - 22,135,880)(21,969,040 - 21,970,180)
sequence
gaattctctgtttagttctgtgccccatgttttaattaggttatttggat
tgttggagactaccttcttgagttctttatatattttgtatattagcagt
gtatcaaatataggtttagtgaagatccctccccaatctgtaggctgctg
ttttgttgtattgacagtgtccttttccttactggagcttttctgtttca
caaagttacaatttatcaattggtgatcttagagcctgagccactggtgt
tctgttcaggaaattgttgcctgtaccaatgagtctctatatctgctccc
aaaaggtgctcaatgaatcctcttagattacaattggactgatacacact
gatctgagtatagtagaacatcattaagaatcatttcattgattttttgt
ttgattttttaatttttaatatttatttatttatttatttatttatttat
ttattaccagtcttatttgcttctttcataggtctctgattcctggctat
ccaggcactgtaaggcagtgtatgatggtacatgatcccctgcacctgta
gcaccagggtatatcatgatatatttcaggcagtgtaagcatccacacac
acacagtttaacacacacacacacacacacacacacacacacacacacag
aaatctttaaagaaaaattacagtatgttgactggatgacatgtctattg
gtgagaggatggtattgatgtcttctactctcactgtttgagggtcaata
tgcaatttaagctgtaatagtggttattttataaacttgagtatccttgt
gtttggggcataggtggtaagaactgaaatgtcatcttggtagatttttc
tttgatgagtatatagttttctttccaactcttttgattagttttagttt
gaagtctattttggtgggtattattatggctatatcagctggtttttagg
tccatttgctgaaaatttttatcagccctttctccagttaatggctatct
ttgatactgagttatgtttgcacatgcacagaaggtggatctgtcttgct
ttgatctgcttttatattatattattataaatttatgaacacaatatcag
gcctctttctatatcctcacaaatcttttccattccattccctctctc
gaattccctagatgtttcatttagcatgatgttataagcactctacaaca
tgatcttaaattataataaagttaaatttttgctataaattaaaactttt
taagaatgttgaaatataatttctactttaggatctttttcataaattaa
ttatttttcctttttcattgtcacaatgatcctattgtgtcataataatg
ttacattcataaatgcatttaaaatacacgttaaaagtttcttaaaggat
attataatcaatactatgaattatatgtataatatataattatttcctta
gataataataaatttaattacaacaaattgttgacaagttgacagtacct
tctaaaataaggtaacctaaagtggaacaacagctagacataatgtaaga
atttgcaggatggagagccgatgaatttgcctactatagagaagttgcac
ctgcctagaactaaaggtgtgtaaaatcatgcccaggtatcactggttct
ttaagtccacaatgtccttgcaatgcacacccaatgctctcaagttcaca
gtttttaatgaggttccaatctaataatgatctgtccctaatttttccat
tttaaaataatactgagatttttgtcataaccttttcttttctctctatg
tcaaacttagaaaattttatttgtccttgaccaaatggacatctcttaat
ctgttatttcagaaactcatatctttatgtagcccaatcatgaggtacat
atatgttactttcagatatttctagagactaaatgcaacagaatacaaat
gtgtgggtattgggatatttaccctcacttgaagtttttatcaggtgaca
taatggaaatttgtatttgtttgaaagtgttttacaaaattaatgtaatg
agttatgtgggaggttatttttcttttttattggatattttatttatgta
cattcaactgttatccccccacttccctctggtttctctcacaaccaccc
tatcccatccccacacccctgctctatggaggtgttccccccacatgcac
tctacctcacctcattgggcatcccattacactaggcatcagctctcacg
gacaggtcctcttccactgatgacaga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr15_22134817_22135880
seq2: B6Ng01-005P04.b_158_1195 (reverse)

seq1  GAGAAAGGGA---GAATGGGAGAAAGATTTGTGTGAGGATATTAGGAAAG  47
      |||| |||||   ||||||   |||||||  |||||||||||   |||||
seq2  GAGAGAGGGAATGGAATGG--AAAAGATT--TGTGAGGATAT--AGAAAG  44

seq1  GAAGGGCTGATATTGTGTTATAAATAAATTTAATTAATAATAATAATAAT  97
        ||| |||||||||||||    |||||||||  ||||||| ||||| ||
seq2  --AGGCCTGATATTGTGTT---CATAAATTTA--TAATAAT-ATAAT-AT  85

seq1  AAAAGCAGATACAAAAGCAAAGACAGAATCCACCCTTCTGGTGCATTGTG  147
      ||||||||||   ||||| ||||||| ||||| |||||| ||||| ||||
seq2  AAAAGCAGAT--CAAAGC-AAGACAG-ATCCA-CCTTCT-GTGCA-TGTG  128

seq1  CAAACATAACTCAGTATCAAAGATAGCCATTAACTGGGAGAAAAGGGCTG  197
      ||||||||||||||||||||||||||||||||||| |||| |||||||||
seq2  CAAACATAACTCAGTATCAAAGATAGCCATTAACT-GGAG-AAAGGGCTG  176

seq1  ATAAAAATTTTTCAAGCAAATGGACCTAAAAAACCAGCTGATATAGCCAT  247
      |||||||||||   ||||||||||||| ||||||||||||||||||||||
seq2  ATAAAAATTTT--CAGCAAATGGACCT-AAAAACCAGCTGATATAGCCAT  223

seq1  AATAATACCCACCAAAATAGACTTCAAACTAAAACTAATCAAAAGAGTTT  297
      ||||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  AATAATACCCACCAAAATAGACTTCAAACTAAAACTAATCAAAAGAG-TT  272

seq1  GGAAAGAAAACTATATACTCATCAAAGGAAAAATCTACCAAGATGACATT  347
      |||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  GGAAAGAAAACTATATACTCATCAAA-GAAAAATCTACCAAGATGACATT  321

seq1  TCAGTTCTTACCACCTATGCCCCAAACACAAGGATACTCAAGTTTATAAA  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGTTCTTACCACCTATGCCCCAAACACAAGGATACTCAAGTTTATAAA  371

seq1  ATAACCACTATTACAGCTTAAATTGCATATTGACCCTCAAACAGTGAGAG  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAACCACTATTACAGCTTAAATTGCATATTGACCCTCAAACAGTGAGAG  421

seq1  TAGAAGACATCAATACCATCCTCTCACCAATAGACATGTCATCCAGTCAA  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAAGACATCAATACCATCCTCTCACCAATAGACATGTCATCCAGTCAA  471

seq1  CATACTGTAATTTTTCTTTAAAGATTTCTGTGTGTGTGTGTGTGTGTGTG  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATACTGTAATTTTTCTTTAAAGATTTCTGTGTGTGTGTGTGTGTGTGTG  521

seq1  TGTGTGTGTGTGTGTGTTAAACTGTGTGTGTGTGGATGCTTACACTGCCT  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTGTGTGTGTGTGTTAAACTGTGTGTGTGTGGATGCTTACACTGCCT  571

seq1  GAAATATATCATGATATACCCTGGTGCTACAGGTGCAGGGGATCATGTAC  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATATATCATGATATACCCTGGTGCTACAGGTGCAGGGGATCATGTAC  621

seq1  CATCATACACTGCCTTACAGTGCCTGGATAGCCAGGAATCAGAGACCTAT  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCATACACTGCCTTACAGTGCCTGGATAGCCAGGAATCAGAGACCTAT  671

seq1  GAAAGAAGCAAATAAGACTGGTAATAAATAAATAAATAAATAAATAAATA  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGAAGCAAATAAGACTGGTAATAAATAAATAAATAAATAAATAAATA  721

seq1  AATAAATATTAAAAATTAAAAAATCAAACAAAAAATCAATGAAATGATTC  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAAATATTAAAAATTAAAAAATCAAACAAAAAATCAATGAAATGATTC  771

seq1  TTAATGATGTTCTACTATACTCAGATCAGTGTGTATCAGTCCAATTGTAA  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATGATGTTCTACTATACTCAGATCAGTGTGTATCAGTCCAATTGTAA  821

seq1  TCTAAGAGGATTCATTGAGCACCTTTTGGGAGCAGATATAGAGACTCATT  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAAGAGGATTCATTGAGCACCTTTTGGGAGCAGATATAGAGACTCATT  871

seq1  GGTACAGGCAACAATTTCCTGAACAGAACACCAGTGGCTCAGGCTCTAAG  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTACAGGCAACAATTTCCTGAACAGAACACCAGTGGCTCAGGCTCTAAG  921

seq1  ATCACCAATTGATAAATTGTAACTTTGTGAAACAGAAAAGCTCCAGTAAG  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCACCAATTGATAAATTGTAACTTTGTGAAACAGAAAAGCTCCAGTAAG  971

seq1  GAAAAGGACACTGTCAATACAACAAAACAGCAGCCTACAGATTGGGGAGG  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAAGGACACTGTCAATACAACAAAACAGCAGCCTACAGATTGGGGAGG  1021

seq1  GATCTTCACTAAACCTA  1064
      |||||||||||||||||
seq2  GATCTTCACTAAACCTA  1038

seq1: chr15_21969040_21970180
seq2: B6Ng01-005P04.g_68_1194

seq1  GAATTCCCTAGATGTTTCATTTAGCATGATGTTATAAGCACTCTACAACA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCCTAGATGTTTCATTTAGCATGATGTTATAAGCACTCTACAACA  50

seq1  TGATCTTAAATTATAATAAAGTTAAATTTTTGCTATAAATTAAAACTTTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATCTTAAATTATAATAAAGTTAAATTTTTGCTATAAATTAAAACTTTT  100

seq1  TAAGAATGTTGAAATATAATTTCTACTTTAGGATCTTTTTCATAAATTAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGAATGTTGAAATATAATTTCTACTTTAGGATCTTTTTCATAAATTAA  150

seq1  TTATTTTTCCTTTTTCATTGTCACAATGATCCTATTGTGTCATAATAATG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTTTTCCTTTTTCATTGTCACAATGATCCTATTGTGTCATAATAATG  200

seq1  TTACATTCATAAATGCATTTAAAATACACGTTAAAAGTTTCTTAAAGGAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACATTCATAAATGCATTTAAAATACACGTTAAAAGTTTCTTAAAGGAT  250

seq1  ATTATAATCAATACTATGAATTATATGTATAATATATAATTATTTCCTTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATAATCAATACTATGAATTATATGTATAATATATAATTATTTCCTTA  300

seq1  GATAATAATAAATTTAATTACAACAAATTGTTGACAAGTTGACAGTACCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAATAATAAATTTAATTACAACAAATTGTTGACAAGTTGACAGTACCT  350

seq1  TCTAAAATAAGGTAACCTAAAGTGGAACAACAGCTAGACATAATGTAAGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAAAATAAGGTAACCTAAAGTGGAACAACAGCTAGACATAATGTAAGA  400

seq1  ATTTGCAGGATGGAGAGCCGATGAATTTGCCTACTATAGAGAAGTTGCAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGCAGGATGGAGAGCCGATGAATTTGCCTACTATAGAGAAGTTGCAC  450

seq1  CTGCCTAGAACTAAAGGTGTGTAAAATCATGCCCAGGTATCACTGGTTCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCCTAGAACTAAAGGTGTGTAAAATCATGCCCAGGTATCACTGGTTCT  500

seq1  TTAAGTCCACAATGTCCTTGCAATGCACACCCAATGCTCTCAAGTTCACA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAGTCCACAATGTCCTTGCAATGCACACCCAATGCTCTCAAGTTCACA  550

seq1  GTTTTTAATGAGGTTCCAATCTAATAATGATCTGTCCCTAATTTTTCCAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTTAATGAGGTTCCAATCTAATAATGATCTGTCCCTAATTTTTCCAT  600

seq1  TTTAAAATAATACTGAGATTTTTGTCATAACCTTTTCTTTTCTCTCTATG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAAAATAATACTGAGATTTTTGTCATAACCTTTTCTTTTCTCTCTATG  650

seq1  TCAAACTTAGAAAATTTTATTTGTCCTTGACCAAATGGACATCTCTTAAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAACTTAGAAAATTTTATTTGTCCTTGACCAAATGGACATCTCTTAAT  700

seq1  CTGTTATTTCAGAAACTCATATCTTTATGTAGCCCAATCATGAGGTACAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTTATTTCAGAAACTCATATCTTTATGTAGCCCAATCATGAGGTACAT  750

seq1  ATATGTTACTTTCAGATATTTCTAGAGACTAAATGCAACAGAATACAAAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATGTTACTTTCAGATATTTCTAGAGACTAAATGCAACAGAATACAAAT  800

seq1  GTGTGGGTATTGGGATATTTACCCTCACTTGAAGTTTTTATCAGGTGACA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGGGTATTGGGATATTTACCCTCACTTGAAGTTTTTATCAGGTGACA  850

seq1  TAATGG-AATTTGTATTTGTTTGAAAGTGTTTTACAAAATTAATGTAATG  899
      |||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  TAATGGAAATTTGTATTTGTTTGAAAGTGTTTTACAAAATTAATGTAATG  900

seq1  AGTTATGTGGGAGGTTATTTTTCTTTTTTATTGGATATTTTATTTATGTA  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTATGTGGGAGGTTATTTTTCTTTTTTATTGGATATTTTATTTATGTA  950

seq1  CATTTCAACTGTTATCCCCCCCACTTCCCCTCCTGGTTTCTCCTCCACAA  999
      || |||||||||||| |||||||||||||   ||||||||||   |||||
seq2  CA-TTCAACTGTTAT-CCCCCCACTTCCC--TCTGGTTTCTC--TCACAA  994

seq1  CCACCCTATCCCATCCCCACACCCCTGCTCCTATGAGAGTGTTCCCCCAC  1049
      ||||||||||||||||||||||||||||| |||||   ||||||||||  
seq2  CCACCCTATCCCATCCCCACACCCCTGCT-CTATGGAGGTGTTCCCCCCA  1043

seq1  CATGCACTCCTACCTCACCTCATT-GGCATTCCCATACACTAGGGCATCA  1098
      |||||||| ||||||||||||||| ||||| ||  ||||||| |||||| 
seq2  CATGCACT-CTACCTCACCTCATTGGGCATCCCATTACACTA-GGCATC-  1090

seq1  AGCTCTCACAGAACCAAGGGTCTCTCTTCCCACTGATGACAGA  1141
      ||||||||| ||  ||  |||| ||||| ||||||||||||||
seq2  AGCTCTCACGGA--CA--GGTC-CTCTT-CCACTGATGACAGA  1127