BAC Information

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BAC

Clone NameB6Ng01-006M16
Chromosome15 (Build37)
Map Location 101,520,894 - 101,618,045
singlet/doubletdoublet
Overlap geneKrt6a, Krt5, Krt71, Krt74, Krt72
Upstream geneGalnt6, Slc4a8, Scn8a, EG668225, Ankrd33, Acvrl1, Acvr1b, Grasp, Nr4a1, 9430023L20Rik, 6030408B16Rik, Krt80, Krt7, Krt85, Krt83, 1700011A15Rik, 5430421N21Rik, EG574415, Krt84, Krt82, 4732456N10Rik, Krt75, EG432985, EG432986, EG406223, EG432987, Krt6b
Downstream geneKrt73, Krt2, LOC100043001, Krt1, Krt77, Krt76, Krt4, Krt79, Krt78, Krt8, Krt18, LOC676882, Eif4b, Tenc1, Spryd3, Igfbp6, Soat2, Csad, Zfp740, Itgb7, Rarg, D15Mgi27, Espl1, Pfdn5, Myg1, Aaas, Sp7, Sp1, Amhr2, Prr13, Pcbp2, Map3k12, Tarbp2, Npff, Atf7, LOC100043600, Atp5g2, Calcoco1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-006M16.bB6Ng01-006M16.g
ACCDH843554DH843555
length1,122574
definitionDH843554|Mus musculus domesticus DNA, BAC clone: B6Ng01-006M16, 5' end.DH843555|Mus musculus domesticus DNA, BAC clone: B6Ng01-006M16, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(101,616,916 - 101,618,045)(101,520,894 - 101,521,466)
sequence
gaattcctgattcatccagcaatggagccctcagggggcgataagaaaag
atcattgttacctgttctctacctggggacgaggagacctggcccaagag
gacagagacgtctctgtgccttggtttttaggaaaaagtgactgcaaagg
ttacttttataagccaacgttccataaggattatcagctattaacagctt
tcttaattttcctgttcttaatggctagcatcaattaactcttgttcttg
ttgtgaggaaaacacgggttaaaaattgagtgggtgggactgaaataata
tattgctaaaagcacagcctggagtttcttaagggcctgttgaccccacc
cctacccccagcagcacagagagcccacttcttccccatagggacacctc
aggctcctctatctgttcatctcttcctggcgccgccatcttcgccactc
ccaatacccacatcacactgtccaatgtgggcaaacggcttagctgttat
tatgccctctgatgggctcactggaagccatgtcagtagcccccagggac
tgccccaaggtaaggactaagctccaatgtaaggaagagccctgtctgag
gcacttgtgtctttcaaagtcatccccaacataccaaggcttgttctgca
tgccgggagtacgggagagaagagttaatctgggctaggctgtcaatcat
atggggaatttctggagcagagccaacctagacatctcccctaggcccct
acaagccagacccactggaattttctactgatgatcttggtagtgatgac
ctacataattggagggaagcctatggagataaggttgtgaaattattata
atgcaggagacgagcacgggaaattcggggttctgggccattttatagaa
ggttcgtggacaggtgaagtggagagacagaaatctttgcaagtgaacgg
taatttcctaaatgaaggaccgaagagatcgtccccccactccaccccaa
tgacccaaaggggtttccaacatacaattagctgactccattcttgccag
cccagcaggactatttaaggggcggctggcgccagatgcagctgttatcg
gcccaggcctgctgctgccgtc
actgcctgtagctcttcttgctggaggaggtggtggtgtatttgatggta
gaagagctgaggccaccagaagagctgaggccacctccgatggctctgcc
actgccagcactgaagccacctccaaggccatggctgctgctataggagt
agctgctgcctccacccaggcctaagctgctgctggcacccccggcactg
ccatagccgctggacacggtggactgcaccacagctgtgaaggaggaaaa
ggacaccacagacatggtcagcccactgtgaccagataattaagccacaa
agtaaggagaaggggattcggacaagcagagtacttacagatgttgactg
gtccaacaccttcaccattcaacctacaagaggaaagcaacaggtgagaa
ctaggcagccatcacttcagcctgaatgggaagcctcaatctagtgaagg
ctcagagagaatccactagagttttgtttttgggttgattgtttgtttgt
ttgttttgttttgttttgttttgtttaaaaatatttttttatttttgtat
atgtattttatgtttttctgtagc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr15_101616916_101618045
seq2: B6Ng01-006M16.b_46_1167 (reverse)

seq1  GACGGCAGCAGGCAGGCCTGGGGCACGGAT-ACAGCTGCACTCCTGGCG-  48
      |||||||||| |||||||||||   | ||| |||||||||   |||||| 
seq2  GACGGCAGCA-GCAGGCCTGGG---CCGATAACAGCTGCA--TCTGGCGC  44

seq1  CAGCTCGCCCCTTAAATAGTCCTGCTTGGGCTGGC-AGGATGGAGTCAGC  97
      |||| |||||||||||||||||||| ||||||||| || |||||||||||
seq2  CAGC-CGCCCCTTAAATAGTCCTGC-TGGGCTGGCAAGAATGGAGTCAGC  92

seq1  TAATTTGTATGTTGGAAACCCCTTTTGGGTCATTGGGGTGGAGTGGGGGG  147
      ||| |||||||||||||||||| |||||||||||||||||||||||||||
seq2  TAA-TTGTATGTTGGAAACCCC-TTTGGGTCATTGGGGTGGAGTGGGGGG  140

seq1  ACGATCTCTTCGGTCCTTCATTTAGGAAATTACCGTTCACTTGCAAAGAT  197
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGATCTCTTCGGTCCTTCATTTAGGAAATTACCGTTCACTTGCAAAGAT  190

seq1  TTCTGTCTCTTCCACTTCACCTGTCCACGAACCTTCTATAAAATGGCCCA  247
      ||||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGTCTC-TCCACTTCACCTGTCCACGAACCTTCTATAAAATGGCCCA  239

seq1  GAACCCCGAATTTCCCGTGCTCGTCTCCTGCATTATAATAATTTCACAAC  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACCCCGAATTTCCCGTGCTCGTCTCCTGCATTATAATAATTTCACAAC  289

seq1  CTTATCTCCATAGGCTTCCCTCCAATTATGTAGGTCATCACTACCAAGAT  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTATCTCCATAGGCTTCCCTCCAATTATGTAGGTCATCACTACCAAGAT  339

seq1  CATCAGTAGAAAATTCCAGTGGGTCTGGCTTGTAGGGGCCTAGGGGAGAT  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCAGTAGAAAATTCCAGTGGGTCTGGCTTGTAGGGGCCTAGGGGAGAT  389

seq1  GTCTAGGTTGGCTCTGCTCCAGAAATTCCCCATATGATTGACAGCCTAGC  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTAGGTTGGCTCTGCTCCAGAAATTCCCCATATGATTGACAGCCTAGC  439

seq1  CCAGATTAACTCTTCTCTCCCGTACTCCCGGCATGCAGAACAAGCCTTGG  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGATTAACTCTTCTCTCCCGTACTCCCGGCATGCAGAACAAGCCTTGG  489

seq1  TATGTTGGGGATGACTTTGAAAGACACAAGTGCCTCAGACAGGGCTCTTC  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGTTGGGGATGACTTTGAAAGACACAAGTGCCTCAGACAGGGCTCTTC  539

seq1  CTTACATTGGAGCTTAGTCCTTACCTTGGGGCAGTCCCTGGGGGCTACTG  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTACATTGGAGCTTAGTCCTTACCTTGGGGCAGTCCCTGGGGGCTACTG  589

seq1  ACATGGCTTCCAGTGAGCCCATCAGAGGGCATAATAACAGCTAAGCCGTT  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATGGCTTCCAGTGAGCCCATCAGAGGGCATAATAACAGCTAAGCCGTT  639

seq1  TGCCCACATTGGACAGTGTGATGTGGGTATTGGGAGTGGCGAAGATGGCG  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCCACATTGGACAGTGTGATGTGGGTATTGGGAGTGGCGAAGATGGCG  689

seq1  GCGCCAGGAAGAGATGAACAGATAGAGGAGCCTGAGGTGTCCCTATGGGG  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGCCAGGAAGAGATGAACAGATAGAGGAGCCTGAGGTGTCCCTATGGGG  739

seq1  AAGAAGTGGGCTCTCTGTGCTGCTGGGGGTAGGGGTGGGGTCAACAGGCC  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAGTGGGCTCTCTGTGCTGCTGGGGGTAGGGGTGGGGTCAACAGGCC  789

seq1  CTTAAGAAACTCCAGGCTGTGCTTTTAGCAATATATTATTTCAGTCCCAC  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAAGAAACTCCAGGCTGTGCTTTTAGCAATATATTATTTCAGTCCCAC  839

seq1  CCACTCAATTTTTAACCCGTGTTTTCCTCACAACAAGAACAAGAGTTAAT  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACTCAATTTTTAACCCGTGTTTTCCTCACAACAAGAACAAGAGTTAAT  889

seq1  TGATGCTAGCCATTAAGAACAGGAAAATTAAGAAAGCTGTTAATAGCTGA  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATGCTAGCCATTAAGAACAGGAAAATTAAGAAAGCTGTTAATAGCTGA  939

seq1  TAATCCTTATGGAACGTTGGCTTATAAAAGTAACCTTTGCAGTCACTTTT  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATCCTTATGGAACGTTGGCTTATAAAAGTAACCTTTGCAGTCACTTTT  989

seq1  TCCTAAAAACCAAGGCACAGAGACGTCTCTGTCCTCTTGGGCCAGGTCTC  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTAAAAACCAAGGCACAGAGACGTCTCTGTCCTCTTGGGCCAGGTCTC  1039

seq1  CTCGTCCCCAGGTAGAGAACAGGTAACAATGATCTTTTCTTATCGCCCCC  1097
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCGTCCCCAGGTAGAGAACAGGTAACAATGATCTTTTCTTATCGCCCCC  1089

seq1  TGAGGGCTCCATTGCTGGATGAATCAGGAATTC  1130
      |||||||||||||||||||||||||||||||||
seq2  TGAGGGCTCCATTGCTGGATGAATCAGGAATTC  1122

seq1: chr15_101520894_101521466
seq2: B6Ng01-006M16.g_66_645

seq1  GAATTCACTGCCTGTAGCTCTTCTTGCTGGAGGAGGTGGTGGTGTATTTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACTGCCTGTAGCTCTTCTTGCTGGAGGAGGTGGTGGTGTATTTG  50

seq1  ATGGTAGAAGAGCTGAGGCCACCAGAAGAGCTGAGGCCACCTCCGATGGC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGTAGAAGAGCTGAGGCCACCAGAAGAGCTGAGGCCACCTCCGATGGC  100

seq1  TCTGCCACTGCCAGCACTGAAGCCACCTCCAAGGCCATGGCTGCTGCTAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGCCACTGCCAGCACTGAAGCCACCTCCAAGGCCATGGCTGCTGCTAT  150

seq1  AGGAGTAGCTGCTGCCTCCACCCAGGCCTAAGCTGCTGCTGGCACCCCCG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAGTAGCTGCTGCCTCCACCCAGGCCTAAGCTGCTGCTGGCACCCCCG  200

seq1  GCACTGCCATAGCCGCTGGACACGGTGGACTGCACCACAGCTGTGAAGGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACTGCCATAGCCGCTGGACACGGTGGACTGCACCACAGCTGTGAAGGA  250

seq1  GGAAAAGGACACCACAGACATGGTCAGCCCACTGTGACCAGATAATTAAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAAAGGACACCACAGACATGGTCAGCCCACTGTGACCAGATAATTAAG  300

seq1  CCACAAAGTAAGGAGAAGGGGATTCGGACAAGCAGAGTACTTACAGATGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACAAAGTAAGGAGAAGGGGATTCGGACAAGCAGAGTACTTACAGATGT  350

seq1  TGACTGGTCCAACACCTTCACCATTCAACCTACAAGAGGAAAGCAACAGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACTGGTCCAACACCTTCACCATTCAACCTACAAGAGGAAAGCAACAGG  400

seq1  TGAGAACTAGGCAGCCATCACTTCAGCCTGAATGGGAAGCCTCAATCTAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGAACTAGGCAGCCATCACTTCAGCCTGAATGGGAAGCCTCAATCTAG  450

seq1  TGAAGGCTCAGAGAGAATCCACTAGAGTTTTG-TTTTGGGTTGATTGTTT  499
      |||||||||||||||||||||||||||||||| |||||||||||||||||
seq2  TGAAGGCTCAGAGAGAATCCACTAGAGTTTTGTTTTTGGGTTGATTGTTT  500

seq1  GTTTGTTTGTTTTGTTTTGTTT--GTTTGTTTAAAAATATTCTTT--ATT  545
      ||||||||||||||||||||||   |||||||||||||||| |||   ||
seq2  GTTTGTTTGTTTTGTTTTGTTTTGTTTTGTTTAAAAATATTTTTTTATTT  550

seq1  TAGTATATGTATTTTA--GTTCACTGTAGC  573
      | ||||||||||||||   ||  |||||||
seq2  TTGTATATGTATTTTATGTTTTTCTGTAGC  580