BAC Information

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BAC

Clone NameB6Ng01-007D20
Chromosome15 (Build37)
Map Location 93,442,318 - 93,627,974
singlet/doubletdoublet
Overlap geneZfp42-ps1, LOC100042627, LOC100042631
Upstream genePdzrn4, LOC100042552, LOC100043283, Glt8d3, Yaf2, Zcrb1, Pphln1, LOC627623, Prickle1
Downstream geneD630010B17Rik, Adamts20, Pus7l, Irak4, Twf1, Tmem117
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-007D20.bB6Ng01-007D20.g
ACCDH843872DH843873
length1,105954
definitionDH843872|Mus musculus domesticus DNA, BAC clone: B6Ng01-007D20, 5' end.DH843873|Mus musculus domesticus DNA, BAC clone: B6Ng01-007D20, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(93,442,318 - 93,443,448)(93,627,033 - 93,627,974)
sequence
gaattctctccttgggtttggaagtgtggattctgtatctctttaaaaaa
cgtaatatttgatcttggggaccctgggcagccgttttatactcatgaac
ggagagagcggcaccgcgctaagaaggaggtgggagagttgtaatgagcg
tctggcgctctcttctccccttctagccctctgctcctgcacttgggctt
tgggataaagtcatccatctgcccctctttgtgaccagagcgagtgagtg
gctttttaatggaaagacgacttcaagcatctctgtatccagacgcggct
gcaaaaagcagggcaaagcaacagacaaaaggacagaggtgtatacaaac
ggttgggaaactggaccgttcctttgttcctttctgggaagtttacagca
agcagagccctgagcggagactaaccaatgatgagcatgatatggccacg
gccggaaacgccaggagcgcatctatgtgagttttgagacggggtttctt
gcactccaggtctagccttggatttgctattgcagctaaggctgaccttc
tgtttctgatcctcctgcttgctaatgccaactgctgtgacctcaggtgc
tttcactgtgccctagaatcagcttttaagaggtgatgagtcacacttgg
aagtttcacctagagcctggtcctctccggcagatgaaacctggaatcag
atcctttcccaggacgcgaactcttggtgggagccagagatcatttatct
ctgaaatacgactcagggtgttttgaagtgtgtatatcaccattgttttg
catcgcaaagacggaagggaggactttgaaagttgtttcgaaaatcagca
tttcctttccctcttctgacacagataatttatatgccacttgtggtgtg
acttactcagacaccattatgttcaacacaaatattctgtatttcattat
acaaataactgctgctgtcagagccagtttggggggagcagcctgtctgc
tcccatgaacacattctgctctgcttggcacattctgtctcgttgacatg
gaatgggggactctcatggtggctggagctagcttttgtgggaggtctga
aatga
gaattcaagccagaataaaagatggctggtttatgccaatggaaggtgtg
acttagaacagagatgatataaaactaaatactgatgtgacagatacaca
caaatatgtaaagtaaagggtaatagaaacatacataatactgaaaattg
ccttttcagaaggcacctgccagtgggtttatttctgacaagtttaataa
aaacaaacaatataaaatatagttgtttatgcaacatacagtcttgataa
atggttggacactccataaaatgaaattctttctactcaaaagtaggact
gcttaccgcagcatttacatggaatgatacaaaggaagcatcaggaatcc
cagcaagaggcaggaaatgagcctcatcatgtgatttttgtaaaaaaaaa
aaaagaagaagaagaagaagaagaagaagaagaagaagaagaagaagaag
aagaagaagaagaagaagaagaagaagaagaagttgttttaagcctttta
attgcaatttgctatcatttagccatttaaacagacttgtgaataatgag
ctaaaagattgaaagcctttaagagactccaaccttgtcatatactgact
gaccccagtgacataagaaactgaggaaacacacacacaaaaatacacac
acacatacatacaaatacacacacatatacacaaacatacacatacacac
acataaacacacacaaacaatacacacacctgagttgccttgagagcgag
caggcctcagtagagtctccattccctctctggaacctcataggtcaggc
cttctctgactacaatttttttcccagcctgctgatctttcacactccca
tcagaaatgtccctgaaaaattctgctttggttgtaaaaaatataatgtt
taataacaaaaatgtgtgtgtgtgtgtatgttgtgtgtgtgctgtggttg
tgtg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr15_93442318_93443448
seq2: B6Ng01-007D20.b_42_1146

seq1  GAATTCTCTCCTTGGGTTTGGAAGTGTGGATTCTGTATCTCTTTAAAAAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCTCCTTGGGTTTGGAAGTGTGGATTCTGTATCTCTTTAAAAAA  50

seq1  CGTAATATTTGATCTTGGGGACCCTGGGCAGCCGTTTTATACTCATGAAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTAATATTTGATCTTGGGGACCCTGGGCAGCCGTTTTATACTCATGAAC  100

seq1  GGAGAGAGCGGCACCGCGCTAAGAAGGAGGTGGGAGAGTTGTAATGAGCG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGAGAGCGGCACCGCGCTAAGAAGGAGGTGGGAGAGTTGTAATGAGCG  150

seq1  TCTGGCGCTCTCTTCTCCCCTTCTAGCCCTCTGCTCCTGCACTTGGGCTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGGCGCTCTCTTCTCCCCTTCTAGCCCTCTGCTCCTGCACTTGGGCTT  200

seq1  TGGGATAAAGTCATCCATCTGCCCCTCTTTGTGACCAGAGCGAGTGAGTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGATAAAGTCATCCATCTGCCCCTCTTTGTGACCAGAGCGAGTGAGTG  250

seq1  GCTTTTTAATGGAAAGACGACTTCAAGCATCTCTGTATCCAGACGCGGCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTTTTAATGGAAAGACGACTTCAAGCATCTCTGTATCCAGACGCGGCT  300

seq1  GCAAAAAGCAGGGCAAAGCAACAGACAAAAGGACAGAGGTGTATACAAAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAAAAGCAGGGCAAAGCAACAGACAAAAGGACAGAGGTGTATACAAAC  350

seq1  GGTTGGGAAACTGGACCGTTCCTTTGTTCCTTTCTGGGAAGTTTACAGCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTGGGAAACTGGACCGTTCCTTTGTTCCTTTCTGGGAAGTTTACAGCA  400

seq1  AGCAGAGCCCTGAGCGGAGACTAACCAATGATGAGCATGATATGGCCACG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAGAGCCCTGAGCGGAGACTAACCAATGATGAGCATGATATGGCCACG  450

seq1  GCCGGAAACGCCAGGAGCGCATCTATGTGAGTTTTGAGACGGGGTTTCTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCGGAAACGCCAGGAGCGCATCTATGTGAGTTTTGAGACGGGGTTTCTT  500

seq1  GCACTCCAGGTCTAGCCTTGGATTTGCTATTGCAGCTAAGGCTGACCTTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACTCCAGGTCTAGCCTTGGATTTGCTATTGCAGCTAAGGCTGACCTTC  550

seq1  TGTTTCTGATCCTCCTGCTTGCTAATGCCAACTGCTGTGACCTCAGGTGC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTCTGATCCTCCTGCTTGCTAATGCCAACTGCTGTGACCTCAGGTGC  600

seq1  TTTCACTGTGCCCTAGAATCAGCTTTTAAGAGGTGATGAGTCACACTTGG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCACTGTGCCCTAGAATCAGCTTTTAAGAGGTGATGAGTCACACTTGG  650

seq1  AAGTTTCACCTAGAGCCTGGTCCTCTCCGGCAGATGAAACCTGGAATCAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTTTCACCTAGAGCCTGGTCCTCTCCGGCAGATGAAACCTGGAATCAG  700

seq1  ATCCTTTCCCAGGACGCGAACTCTTGGTGGGAGCCAGAGATCATTTATCT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCTTTCCCAGGACGCGAACTCTTGGTGGGAGCCAGAGATCATTTATCT  750

seq1  CTGAAATACGACTCAGGGTGTTTTGAAGTGTGTATATCACCATTGTTTTG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAAATACGACTCAGGGTGTTTTGAAGTGTGTATATCACCATTGTTTTG  800

seq1  CATCGCAAAGACGGAAGGGAGGACTTTGAAAGTTGTTTCGAAAATCAGCA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCGCAAAGACGGAAGGGAGGACTTTGAAAGTTGTTTCGAAAATCAGCA  850

seq1  TTTCCTTTCCCTCTTCTGACACAGATAATTTATATGCCACTTGTGGTGTG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCTTTCCCTCTTCTGACACAGATAATTTATATGCCACTTGTGGTGTG  900

seq1  ACTTACTCAGACACCATTATGTTTCAAACACAAATATTCTTGTATTTTCA  950
      |||||||||||||||||||||||   ||||||||||||| |||| |||||
seq2  ACTTACTCAGACACCATTATGTT--CAACACAAATATTC-TGTA-TTTCA  946

seq1  TTATTACAAAATAACTTGCTGCTTGTCAGAGCCAAGTTTTGGGGGGAGCC  1000
      ||| ||| ||||||| |||||| |||||||||||   ||||||||||| |
seq2  TTA-TAC-AAATAAC-TGCTGC-TGTCAGAGCCA--GTTTGGGGGGAG-C  989

seq1  AGCCCTGTCTGCTTCCCATGAAACACATTTCTGCTCTGCCTTGTGCCAAC  1050
      || ||||||||| ||||||| |||||| |||||||||| |||| ||  ||
seq2  AG-CCTGTCTGC-TCCCATG-AACACA-TTCTGCTCTG-CTTG-GC--AC  1031

seq1  ATTCTGTCTCCGTTGACATGGATTGGGGGACTCTTCATTGTGGCTGAAGC  1100
      ||||||||| |||||||||||| |||||||||| |||| ||||||| |||
seq2  ATTCTGTCT-CGTTGACATGGAATGGGGGACTC-TCATGGTGGCTGGAGC  1079

seq1  ATAGCTTTTTGTGGGGAGGGGTCTGAGATGA  1131
       |||| ||||||||   | ||||||| ||||
seq2  -TAGC-TTTTGTGG---GAGGTCTGAAATGA  1105

seq1: chr15_93627033_93627974
seq2: B6Ng01-007D20.g_67_1020 (reverse)

seq1  CACACAAACACA-CACACACAC-ACACACACACACACACACA-TATTGTT  47
      ||||||| |||| ||||||||| ||| ||||||||||||||| | |||||
seq2  CACACAACCACAGCACACACACAACATACACACACACACACATTTTTGTT  50

seq1  A-TAAACA-TATA-TATTTACAA-CAAAGCAGAGTTTGTCA-GGACA-TT  91
      | |||||| |||| | ||||||| ||||||||| ||| ||| ||||| ||
seq2  ATTAAACATTATATTTTTTACAACCAAAGCAGAATTTTTCAGGGACATTT  100

seq1  CTGATGGGAGTGTGAAAGATCAGCAGGCTGGGAAAAAA--TGTAGTCAGA  139
      ||||||||||||||||||||||||||||||||||||||  ||||||||||
seq2  CTGATGGGAGTGTGAAAGATCAGCAGGCTGGGAAAAAAATTGTAGTCAGA  150

seq1  GAAGGCCTGACCTATGAGGTTCCAGAGA-GGAATGGAGACTCTACTGAGG  188
      |||||||||||||||||||||||||||| |||||||||||||||||||||
seq2  GAAGGCCTGACCTATGAGGTTCCAGAGAGGGAATGGAGACTCTACTGAGG  200

seq1  CCTGCTCGCTCTCAAGGCAACTCAGGTGTGTGTATTGTTTGTGTGTGTTT  238
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGCTCGCTCTCAAGGCAACTCAGGTGTGTGTATTGTTTGTGTGTGTTT  250

seq1  ATGTGTGTGTATGTGTATGTTTGTGTATATGTGTGTGTATTTGTATGTAT  288
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTGTGTGTATGTGTATGTTTGTGTATATGTGTGTGTATTTGTATGTAT  300

seq1  GTGTGTGTGTATTTTTGTGTGTGTGTTTCCTCAGTTTCTTATGTCACTGG  338
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGTGTGTATTTTTGTGTGTGTGTTTCCTCAGTTTCTTATGTCACTGG  350

seq1  GGTCAGTCAGTATATGACAAGGTTGGAGTCTCTTAAAGGCTTTCAATCTT  388
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCAGTCAGTATATGACAAGGTTGGAGTCTCTTAAAGGCTTTCAATCTT  400

seq1  TTAGCTCATTATTCACAAGTCTGTTTAAATGGCTAAATGATAGCAAATTG  438
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGCTCATTATTCACAAGTCTGTTTAAATGGCTAAATGATAGCAAATTG  450

seq1  CAATTAAAAGGCTTAAAACAACTTCTTCTTCTTCTTCTTCTTCTTCTTCT  488
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATTAAAAGGCTTAAAACAACTTCTTCTTCTTCTTCTTCTTCTTCTTCT  500

seq1  TCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTC  538
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTC  550

seq1  TTTTTTTTTTTTTACAAAAATCACATGATGAGGCTCATTTCCTGCCTCTT  588
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTTTTTTTTACAAAAATCACATGATGAGGCTCATTTCCTGCCTCTT  600

seq1  GCTGGGATTCCTGATGCTTCCTTTGTATCATTCCATGTAAATGCTGCGGT  638
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGGGATTCCTGATGCTTCCTTTGTATCATTCCATGTAAATGCTGCGGT  650

seq1  AAGCAGTCCTACTTTTGAGTAGAAAGAATTTCATTTTATGGAGTGTCCAA  688
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCAGTCCTACTTTTGAGTAGAAAGAATTTCATTTTATGGAGTGTCCAA  700

seq1  CCATTTATCAAGACTGTATGTTGCATAAACAACTATATTTTATATTGTTT  738
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATTTATCAAGACTGTATGTTGCATAAACAACTATATTTTATATTGTTT  750

seq1  GTTTTTATTAAACTTGTCAGAAATAAACCCACTGGCAGGTGCCTTCTGAA  788
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTTATTAAACTTGTCAGAAATAAACCCACTGGCAGGTGCCTTCTGAA  800

seq1  AAGGCAATTTTCAGTATTATGTATGTTTCTATTACCCTTTACTTTACATA  838
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGCAATTTTCAGTATTATGTATGTTTCTATTACCCTTTACTTTACATA  850

seq1  TTTGTGTGTATCTGTCACATCAGTATTTAGTTTTATATCATCTCTGTTCT  888
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTGTGTATCTGTCACATCAGTATTTAGTTTTATATCATCTCTGTTCT  900

seq1  AAGTCACACCTTCCATTGGCATAAACCAGCCATCTTTTATTCTGGCTTGA  938
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTCACACCTTCCATTGGCATAAACCAGCCATCTTTTATTCTGGCTTGA  950

seq1  ATTC  942
      ||||
seq2  ATTC  954