BAC Information

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BAC

Clone NameB6Ng01-007I05
Chromosome15 (Build37)
Map Location 51,108,847 - 51,261,351
singlet/doubletdoublet
Overlap genenone
Upstream geneTrps1, LOC100039644
Downstream geneLOC100039662, Eif3s3, LOC100039679, D530033C11Rik, Rad21, Aard, LOC100039720, LOC665219, Slc30a8
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-007I05.bB6Ng01-007I05.g
ACCDH844061DH844062
length9221,049
definitionDH844061|Mus musculus domesticus DNA, BAC clone: B6Ng01-007I05, 5' end.DH844062|Mus musculus domesticus DNA, BAC clone: B6Ng01-007I05, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(51,108,847 - 51,109,766)(51,260,294 - 51,261,351)
sequence
gaattctccagtaaaaaatagattcaaactatgtcttctctttttatgtt
tatatatacgaccaacagtgggacaaagaacatgccagtagatagatgtg
taggatcttggtgtatataaggaagtattaactccttgtctatggccaca
acaaaacatttgattaatgtagtacaaagataggggctttattttggctt
acaatccagggaatgaactaatgaacatttgtatcccactcattttcttc
ttttccttcagcctgggatgttatactatggaatggtgcccttcctactg
agagtgagtattcttcactcaagtaacctagtctggatatataatcaccc
cccacccacacacacacacacacacagtcactgacttatttccaggtaac
tgctaaattacatcaagttaacaatgaagtctgagcatcatgtataaatc
tctgatttgacaactccatcactctcacagtggttttcacccttgaggca
tcaatcaagtgttacatactcaccagctcatttattctgttgaacaatgt
gggttagatataataattaatcaataatttttcatattaaaatatagcct
tagaaggataacaataagtgagatctaaatttctaaccaaataatgtcta
agcagaaccccccttttcttggttatattatacttctcagtgacaaaaag
taaagaatggaagttagcccttggcttcactgtgctaagacaatggggtc
tctcattctctcttctctctgtacttcctcattcaatcaagctcttctct
cttctttctctggtgattttccatttgcttcactttccttagatacaaag
gtttttttttctttttcatctattaaaaaagaatcctcaaatgatttgga
aactgttctacaaaaatatctt
gaattctaggggctagtatctaggtgtcagttatgtgctctttggatctc
ctagggaatccccttgtatgtttgaaaacaattgttcctgtatctttagt
catgtaaaagggggtcacctatcattttgataaaatgaaggtcttaggaa
gctaaggaatgttacacttgaaagctgtgttactaagttttcatggggga
aggaaggatgctcagacacagcaaaactttgcaagtactgtggtaaaaca
ttctttgcaagtgattctcacagcacactcttctaattataaatagtgtc
ctcaaaatgcttctgaaagatgtttctctgtgcttaaacgcaggcttact
aaattacaatttagttcttcaatgtctacaacctagagttttctagatag
ttcttggtttcctaggagtcacacttatttgctaaagggacctttcctac
acttcatcatctaccaccatcttcttcccacaacccccagcagtgccgcg
gacattcccatgaaattcagggtagaagctatttttctacttcaatgtta
tatctgatttctttctgtcattgtttctaatgggggaatctctcctactg
ttttaaaatgctttcaataccacaaattattttaacatgaatgatctaca
ctagagaatcttcttatttaaatgagaaacaatgtttggctgaagacagt
aaaatgtcacatccctaaaatgatgacatatgtcagcaaggtatgacatc
acatatggtgatccttgcatttgaaaacagatgaaggcatactgctataa
gtttgttagccagttggcctatacaaaaccttattttaaaaggatagcca
gggtacagtttaataactatctttaaaaagaattgcataaatattgcatt
agttagccatgattccatggattgagctttctttttttggactgtatcca
ttgggtgaagaaagaagttgtgggatatttagatgagaatttaattttaa
gtagaaaagatatgttagagcaagtaaataaaaaagacgaatgtcgtat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr15_51108847_51109766
seq2: B6Ng01-007I05.b_45_965

seq1  GAATTCTCCAGTAAAAAATAGATTCAAACTATGTCTTCTCTTTTTATGTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCCAGTAAAAAATAGATTCAAACTATGTCTTCTCTTTTTATGTT  50

seq1  TATATATACGACCAACAGTGGGACAAAGAACATGCCAGTAGATAGATGTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATATACGACCAACAGTGGGACAAAGAACATGCCAGTAGATAGATGTG  100

seq1  TAGGATCTTGGTGTATATAAGGAAGTATTAACTCCTTGTCTATGGCCACA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGATCTTGGTGTATATAAGGAAGTATTAACTCCTTGTCTATGGCCACA  150

seq1  ACAAAACATTTGATTAATGTAGTACAAAGATAGGGGCTTTATTTTGGCTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAAACATTTGATTAATGTAGTACAAAGATAGGGGCTTTATTTTGGCTT  200

seq1  ACAATCCAGGGAATGAACTAATGAACATTTGTATCCCACTCATTTTCTTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAATCCAGGGAATGAACTAATGAACATTTGTATCCCACTCATTTTCTTC  250

seq1  TTTTCCTTCAGCCTGGGATGTTATACTATGGAATGGTGCCCTTCCTACTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCCTTCAGCCTGGGATGTTATACTATGGAATGGTGCCCTTCCTACTG  300

seq1  AGAGTGAGTATTCTTCACTCAAGTAACCTAGTCTGGATATATAATCACCC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGTGAGTATTCTTCACTCAAGTAACCTAGTCTGGATATATAATCACCC  350

seq1  CCCACCCACACACACACACACACACAGTCACTGACTTATTTCCAGGTAAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCACCCACACACACACACACACACAGTCACTGACTTATTTCCAGGTAAC  400

seq1  TGCTAAATTACATCAAGTTAACAATGAAGTCTGAGCATCATGTATAAATC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTAAATTACATCAAGTTAACAATGAAGTCTGAGCATCATGTATAAATC  450

seq1  TCTGATTTGACAACTCCATCACTCTCACAGTGGTTTTCACCCTTGAGGCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGATTTGACAACTCCATCACTCTCACAGTGGTTTTCACCCTTGAGGCA  500

seq1  TCAATCAAGTGTTACATACTCACCAGCTCATTTATTCTGTTGAACAATGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAATCAAGTGTTACATACTCACCAGCTCATTTATTCTGTTGAACAATGT  550

seq1  GGGTTAGATATAATAATTAATCAATAATTTTTCATATTAAAATATAGCCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTTAGATATAATAATTAATCAATAATTTTTCATATTAAAATATAGCCT  600

seq1  TAGAAGGATAACAATAAGTGAGATCTAAATTTCTAACCAAATAATGTCTA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAAGGATAACAATAAGTGAGATCTAAATTTCTAACCAAATAATGTCTA  650

seq1  AGCAGAA-CCCCCTTTTCTTGGTTATATTATACTTCTCAGTGACAAAAAG  699
      ||||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAGAACCCCCCTTTTCTTGGTTATATTATACTTCTCAGTGACAAAAAG  700

seq1  TAAAGAATGGAAGTTAGCCCTTGGCTTCACTGTGCTAAGACAAT-GGGTC  748
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  TAAAGAATGGAAGTTAGCCCTTGGCTTCACTGTGCTAAGACAATGGGGTC  750

seq1  TCTCATTCTCTCTTCTCTCTGTTCTTCCTCATTCAATCAAGCTCTTCTCT  798
      |||||||||||||||||||||| |||||||||||||||||||||||||||
seq2  TCTCATTCTCTCTTCTCTCTGTACTTCCTCATTCAATCAAGCTCTTCTCT  800

seq1  CTTCTTTCTCTGGTGA-TTTCCATTTGCTTCACTTT-CTTAGATACAAAA  846
      |||||||||||||||| ||||||||||||||||||| |||||||||||| 
seq2  CTTCTTTCTCTGGTGATTTTCCATTTGCTTCACTTTCCTTAGATACAAAG  850

seq1  GGTTTTTTTTCTTCTTTCATCTATTAAAAAAGAAATCTTCAAATGATTTG  896
      | ||||||||||| |||||||||||||||||| |||| ||||||||||||
seq2  GTTTTTTTTTCTT-TTTCATCTATTAAAAAAG-AATCCTCAAATGATTTG  898

seq1  TAAACTGTTCAACAAAGAATATCT  920
       ||||||||| ||||| |||||||
seq2  GAAACTGTTCTACAAA-AATATCT  921

seq1: chr15_51260294_51261351
seq2: B6Ng01-007I05.g_69_1117 (reverse)

seq1  ACACGACATTCAGTCTTTTTTCTATTATCTTGCTCTTACATATTCTTTTT  50
      | ||||||||| ||||||||  ||||  |||||||| ||||||   ||||
seq2  ATACGACATTC-GTCTTTTT--TATTTACTTGCTCTAACATAT--CTTTT  45

seq1  CTACTTTAAATTTAATTTCTCATCTAAATTATTCCCACAACTTCTTTCTT  100
      |||| ||||| |||| |||||||||||||   ||||||||||||||||||
seq2  CTAC-TTAAAATTAAATTCTCATCTAAAT--ATCCCACAACTTCTTTCTT  92

seq1  CACCCAATGGATACAAGTCCAAAAAAGGAAAGCTCAATCCATGGAATCAT  150
      |||||||||||||| ||||||||||| |||||||||||||||||||||||
seq2  CACCCAATGGATAC-AGTCCAAAAAAAGAAAGCTCAATCCATGGAATCAT  141

seq1  GGCTAACTTATTGCATATTTAATGCAATTCCTTTTTAAAGATAAGTTATT  200
      |||||||| ||   |||||| |||||||| |||||||||||| |||||||
seq2  GGCTAACTAATGCAATATTT-ATGCAATT-CTTTTTAAAGAT-AGTTATT  188

seq1  AAACTGTACCCTGGCTATCCTTTTAAAA-AAGGTTTTGTATAGGCCAGAC  249
      |||||||||||||||||||||||||||| |||||||||||||||||| ||
seq2  AAACTGTACCCTGGCTATCCTTTTAAAATAAGGTTTTGTATAGGCCA-AC  237

seq1  TGGCT-ACAAACTTATAGCAGTATGCCTTCATCTGTTTTTCAAATGCAAG  298
      ||||| ||||||||||||||||||||||||||||| ||||||||||||||
seq2  TGGCTAACAAACTTATAGCAGTATGCCTTCATCTG-TTTTCAAATGCAAG  286

seq1  GATCACCATATGTGATGTCATACCTTGCTGACATATGTCATCATTTTAGG  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCACCATATGTGATGTCATACCTTGCTGACATATGTCATCATTTTAGG  336

seq1  GATGTGACATTTTACTGTCTTCAGCC-AACATTGTTTCTCATTTAAATAA  397
      |||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  GATGTGACATTTTACTGTCTTCAGCCAAACATTGTTTCTCATTTAAATAA  386

seq1  GAAGATTCTCTAGTGTAGATCATTCATGTT-AAATAATTTGTGGTATTGA  446
      |||||||||||||||||||||||||||||| |||||||||||||||||||
seq2  GAAGATTCTCTAGTGTAGATCATTCATGTTAAAATAATTTGTGGTATTGA  436

seq1  AAGCATTTTAAAACAGTAGGAGAGATT-CCCCATTAGAAACAATGACAGA  495
      ||||||||||||||||||||||||||| ||||||||||||||||||||||
seq2  AAGCATTTTAAAACAGTAGGAGAGATTCCCCCATTAGAAACAATGACAGA  486

seq1  AAGAAATCAGATATAACATTGAAGTAGAAAAATAGCTTCTACCCTGAATT  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAATCAGATATAACATTGAAGTAGAAAAATAGCTTCTACCCTGAATT  536

seq1  TCATGGGAATGTCCGCGGCACTGCTGGGGGTTGTGGGAAGAAGATGGTGG  595
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATGGGAATGTCCGCGGCACTGCTGGGGGTTGTGGGAAGAAGATGGTGG  586

seq1  TAGATGATGAAGTGTAGGAAAGGTCCCTTTAGCAAATAAGTGTGACTCCT  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGATGATGAAGTGTAGGAAAGGTCCCTTTAGCAAATAAGTGTGACTCCT  636

seq1  AGGAAACCAAGAACTATCTAGAAAACTCTAGGTTGTAGACATTGAAGAAC  695
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAAACCAAGAACTATCTAGAAAACTCTAGGTTGTAGACATTGAAGAAC  686

seq1  TAAATTGTAATTTAGTAAGCCTGCGTTTAAGCACAGAGAAACATCTTTCA  745
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATTGTAATTTAGTAAGCCTGCGTTTAAGCACAGAGAAACATCTTTCA  736

seq1  GAAGCATTTTGAGGACACTATTTATAATTAGAAGAGTGTGCTGTGAGAAT  795
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGCATTTTGAGGACACTATTTATAATTAGAAGAGTGTGCTGTGAGAAT  786

seq1  CACTTGCAAAGAATGTTTTACCACAGTACTTGCAAAGTTTTGCTGTGTCT  845
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTTGCAAAGAATGTTTTACCACAGTACTTGCAAAGTTTTGCTGTGTCT  836

seq1  GAGCATCCTTCCTTCCCCCATGAAAACTTAGTAACACAGCTTTCAAGTGT  895
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCATCCTTCCTTCCCCCATGAAAACTTAGTAACACAGCTTTCAAGTGT  886

seq1  AACATTCCTTAGCTTCCTAAGACCTTCATTTTATCAAAATGATAGGTGAC  945
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACATTCCTTAGCTTCCTAAGACCTTCATTTTATCAAAATGATAGGTGAC  936

seq1  CCCCTTTTACATGACTAAAGATACAGGAACAATTGTTTTCAAACATACAA  995
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCTTTTACATGACTAAAGATACAGGAACAATTGTTTTCAAACATACAA  986

seq1  GGGGATTCCCTAGGAGATCCAAAGAGCACATAACTGACACCTAGATACTA  1045
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGATTCCCTAGGAGATCCAAAGAGCACATAACTGACACCTAGATACTA  1036

seq1  GCCCCTAGAATTC  1058
      |||||||||||||
seq2  GCCCCTAGAATTC  1049