BAC Information

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BAC

Clone NameB6Ng01-008M05
Chromosome15 (Build37)
Map Location 11,763,920 - 11,900,011
singlet/doubletdoublet
Overlap geneNpr3, LOC381002
Upstream geneC1qtnf3, Amacr, Slc45a2, Rxfp3, Adamts12, Tars, LOC100039772
Downstream geneSub1, LOC100040027, Zfr, LOC100040052, LOC100040066, Mtmr12, LOC100039846, Golph3, Pdzd2, LOC100040109, 6030458C11Rik, Rnasen
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-008M05.bB6Ng01-008M05.g
ACCDH844909DH844910
length653616
definitionDH844909|Mus musculus domesticus DNA, BAC clone: B6Ng01-008M05, 5' end.DH844910|Mus musculus domesticus DNA, BAC clone: B6Ng01-008M05, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(11,763,920 - 11,764,572)(11,899,450 - 11,900,011)
sequence
gaattctcaagaagaaaaagacattaagaaagataaaacataaattttgt
atgacccttgaaagagccagctctgagagacatgcatgtaagctccaaca
cacatgcttctctggcatgtctggctctcagttcccagttgcatgaccca
ggtaagttgctgtgtcactctgtgtcacagaggtaaccagagttcctctt
taagacagacatgaggactgtgtggtgtgcagagagcacatggtagaaaa
gttgaacccaatctgtgcctagtgttcccagctgaagaacaaagctacac
actgcaaaggagacctcccgctctaaggctgtacaccaacaagactcctg
tttcctatctatgagctactcttgaccctgggagcctaagaacgtgagga
acagttggtaacatttacctcatgaagatatgagctttgagcacagtgct
tctaaaccttacaatgtcttcgttgctttcttgtttgtacaaaaagggaa
actgaggctctgaaagatgctatggtttaggggagcacaatctatcaaac
agaagcacgagagttagaactttgaagaccttcttgagggactagcttta
gaaatgaggaatattactgggtaagtgtgtgtgtgtgtgtgtgtgtgtgt
gtg
gaattctcagcaacctactgactaaacatgggctggttacagaagacaca
aatagacatgctaacttgggtgaggttggggtggtcgggtggggtggccc
aagaagatccaaccctacatgaagaactacaggctactctacgttgccga
gagaaggaagagcacgcctgctggctatccaataccgtgtggtcagccct
gaaaagcatatatacatgtaacattatgcagacagaacaggttgtatttg
tatgtttagtaatatatatgcataaacatatttgcatgaaatgacagtta
atagaggaagggggaccattttcttgaaagtgagcaaagaggggtatatg
ggaaggctcatagggtggaaagggaagggggaaatgatgtgattataatc
tcaaaaaaaataataaaaaatataactgctgctagctcactcccttaaaa
tgtatgaagacatctaagggaagagtatttaagacactcaacagaccttc
ccggtaaccacgccctctcggcccaccactgtcgctgctatgatctggtg
ctgtggcctcacatggggagtgagtattctggatttcgaggcttttattc
cgattcacaggatttt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr15_11763920_11764572
seq2: B6Ng01-008M05.b_46_698

seq1  GAATTCTCAAGAAGAAAAAGACATTAAGAAAGATAAAACATAAATTTTGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCAAGAAGAAAAAGACATTAAGAAAGATAAAACATAAATTTTGT  50

seq1  ATGACCCTTGAAAGAGCCAGCTCTGAGAGACATGCATGTAAGCTCCAACA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGACCCTTGAAAGAGCCAGCTCTGAGAGACATGCATGTAAGCTCCAACA  100

seq1  CACATGCTTCTCTGGCATGTCTGGCTCTCAGTTCCCAGTTGCATGACCCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATGCTTCTCTGGCATGTCTGGCTCTCAGTTCCCAGTTGCATGACCCA  150

seq1  GGTAAGTTGCTGTGTCACTCTGTGTCACAGAGGTAACCAGAGTTCCTCTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTAAGTTGCTGTGTCACTCTGTGTCACAGAGGTAACCAGAGTTCCTCTT  200

seq1  TAAGACAGACATGAGGACTGTGTGGTGTGCAGAGAGCACATGGTAGAAAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGACAGACATGAGGACTGTGTGGTGTGCAGAGAGCACATGGTAGAAAA  250

seq1  GTTGAACCCAATCTGTGCCTAGTGTTCCCAGCTGAAGAACAAAGCTACAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGAACCCAATCTGTGCCTAGTGTTCCCAGCTGAAGAACAAAGCTACAC  300

seq1  ACTGCAAAGGAGACCTCCCGCTCTAAGGCTGTACACCAACAAGACTCCTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGCAAAGGAGACCTCCCGCTCTAAGGCTGTACACCAACAAGACTCCTG  350

seq1  TTTCCTATCTATGAGCTACTCTTGACCCTGGGAGCCTAAGAACGTGAGGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCTATCTATGAGCTACTCTTGACCCTGGGAGCCTAAGAACGTGAGGA  400

seq1  ACAGTTGGTAACATTTACCTCATGAAGATATGAGCTTTGAGCACAGTGCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGTTGGTAACATTTACCTCATGAAGATATGAGCTTTGAGCACAGTGCT  450

seq1  TCTAAACCTTACAATGTCTTCGTTGCTTTCTTGTTTGTACAAAAAGGGAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAAACCTTACAATGTCTTCGTTGCTTTCTTGTTTGTACAAAAAGGGAA  500

seq1  ACTGAGGCTCTGAAAGATGCTATGGTTTAGGGGAGCACAATCTATCAAAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGAGGCTCTGAAAGATGCTATGGTTTAGGGGAGCACAATCTATCAAAC  550

seq1  AGAAGCACGAGAGTTAGAACTTTGAAGACCTTCTTGAGGGACTAGCTTTA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGCACGAGAGTTAGAACTTTGAAGACCTTCTTGAGGGACTAGCTTTA  600

seq1  GAAATGAGGAATATTACTGGGTAAGTGTGTGTGTGTGTGTGTGTGTGTGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATGAGGAATATTACTGGGTAAGTGTGTGTGTGTGTGTGTGTGTGTGT  650

seq1  GTG  653
      |||
seq2  GTG  653

seq1: chr15_11899450_11900011
seq2: B6Ng01-008M05.g_118_680 (reverse)

seq1  AAACTCCTGTGAAT-GGAATAAAAGCCTCGAAATCCAGAATACTCACTCC  49
      ||| |||||||||| |||||||||||||||||||||||||||||||||||
seq2  AAAATCCTGTGAATCGGAATAAAAGCCTCGAAATCCAGAATACTCACTCC  50

seq1  CCATGTGAGGCCACAGCACCAGATCATAGCAGCGACAGTGGTGGGCCGAG  99
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATGTGAGGCCACAGCACCAGATCATAGCAGCGACAGTGGTGGGCCGAG  100

seq1  AGGGCGTGGTTACCGGGAAGGTCTGTTGAGTGTCTTAAATACTCTTCCCT  149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGCGTGGTTACCGGGAAGGTCTGTTGAGTGTCTTAAATACTCTTCCCT  150

seq1  TAGATGTCTTCATACATTTTAAGGGAGTGAGCTAGCAGCAGTTATATTTT  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGATGTCTTCATACATTTTAAGGGAGTGAGCTAGCAGCAGTTATATTTT  200

seq1  TTATTATTTTTTTTGAGATTATAATCACATCATTTCCCCCTTCCCTTTCC  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTATTTTTTTTGAGATTATAATCACATCATTTCCCCCTTCCCTTTCC  250

seq1  ACCCTCTGAGCCTTCCCATATACCCCTCTTTGCTCACTTTCAAGAAAATG  299
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCTATGAGCCTTCCCATATACCCCTCTTTGCTCACTTTCAAGAAAATG  300

seq1  GTCCCCCTTCCTCTATTAACTGTCATTTCATGCAAATATGTTTATGCATA  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCCCCTTCCTCTATTAACTGTCATTTCATGCAAATATGTTTATGCATA  350

seq1  TATATTACTAAACATACAAATACAACCTGTTCTGTCTGCATAATGTTACA  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATTACTAAACATACAAATACAACCTGTTCTGTCTGCATAATGTTACA  400

seq1  TGTATATATGCTTTTCAGGGCTGACCACACGGTATTGGATAGCCAGCAGG  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTATATATGCTTTTCAGGGCTGACCACACGGTATTGGATAGCCAGCAGG  450

seq1  CGTGCTCTTCCTTCTCTCGGCAACGTAGAGTAGCCTGTAGTTCTTCATGT  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTGCTCTTCCTTCTCTCGGCAACGTAGAGTAGCCTGTAGTTCTTCATGT  500

seq1  AGGGTTGGATCTTCTTGGGCCACCCCACCCGACCACCCCAACCTCACCCA  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGTTGGATCTTCTTGGGCCACCCCACCCGACCACCCCAACCTCACCCA  550

seq1  AGTTAGCATGTCT  562
      |||||||||||||
seq2  AGTTAGCATGTCT  563