BAC Information

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BAC

Clone NameB6Ng01-009E03
Chromosome15 (Build37)
Map Location 27,849,217 - 27,850,294
singlet/doubletsinglet
Overlap geneTrio
Upstream geneLOC625311, Ank, BC087945, LOC100040622, BC052328
Downstream geneLOC667126, Dnahc5, EG382974, LOC100040675, LOC100040689, LOC100040702, LOC667153
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-009E03.g
ACCDH845249
length1,069
definitionDH845249|Mus musculus domesticus DNA, BAC clone: B6Ng01-009E03, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattcaacatcatgcgcttctccaagtgcacatccccggatttgattga
attcgggtgccttgacctaagggccctcctgtgttagcttcctcgttgct
gggattacagttgtgtgacagcgtgcccgcctggtgagagactgtctatc
agaatatgagaactgggccagtgagcacactagaactccacttatttaat
actctttacttagaccacatcttttaccagttgtgaacatgaaaaataat
gtttcagatcttttccttgtactatttgacaaaaatggaaggaaaaaaaa
aaaaaaaccaggcctgggggagctgtcttgtgtttctctgagagtatgtt
agtgatggcagatgcagctctggttgtaatgggcattcagccctagaatg
gtgacctcccttagagtatcctaaggcatgagcacgagggagaaaatctt
tctcccacgttcctaggtgggtgctctcctggtgggcgggctgggcatat
ttaggccgcagctcactctacttacgcattggcttgtcctaagttgtagg
cagtattctggcctctcgtaaaattgaaaattgttccctggctttctaag
attttctgttcttcagtccatggccttggccacctcggaaattggagtgg
caacaggctagcttagtcattgatgctcttcttcggggtataacccaaaa
agcttagaaggagcgagccaggagggagcactggccagtgtgggctgtgc
ataagcccctctgtgtgccaggcaagtactgctattaaccaggctgagga
gactaagagtaggcatcgagctccctctagaggctttgctgggctacaac
aagcagacttttccaaaaaaaagaaaaaaaaaaaagagctgccatgccaa
tgctgcagcctttctctggcagttactaaattcccaaggttaaaggaaga
tttggcaatgattggaactgattactatttggtgtcttccggggacaggc
tatctatggctatgcatggcttaagagtcttcaggggcctgtctctggca
tgtggtatgaccatattca
quality valuesOpen.




Alignment Information

BAC End 1BAC End 2
seq1: chr15_27849217_27850294
seq2: B6Ng01-009E03.g_67_1135 (reverse)

seq1  TGAATAATGGTCATTACACATGCCCAGAGACAGTGCCCCTGAAGACTC-T  49
      ||||| ||||||||  |||||| |||||||||| |||||||||||||| |
seq2  TGAAT-ATGGTCATACCACATG-CCAGAGACAG-GCCCCTGAAGACTCTT  47

seq1  AAGCCATGC-TAGCCATAG-TAGCTTGTCCCCGGAAGACACAATAT-GTA  96
      ||||||||| ||||||||| |||| |||||||||||||||| | || |||
seq2  AAGCCATGCATAGCCATAGATAGCCTGTCCCCGGAAGACACCAAATAGTA  97

seq1  ATCAGTTCCAATCATTTGCCAAATCTTCCTTTTAACCTTGTGGAATTTAG  146
      |||||||||||||| |||||||||||||| |||||||||| |||||||| 
seq2  ATCAGTTCCAATCA-TTGCCAAATCTTCC-TTTAACCTTG-GGAATTTA-  143

seq1  GTAACTGCCAGAG-AAGGCTGCAGCATTGGCATTGGCAGCTTTTTTTTTT  195
      ||||||||||||| |||||||||||||||||| |||||||      | ||
seq2  GTAACTGCCAGAGAAAGGCTGCAGCATTGGCA-TGGCAGC------TCTT  186

seq1  TTTTTTTTTTTTTTTTTTTGGAAAAGTCTGCTTGTTGTAGCCCAGCAAAG  245
      |||||||||| |||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTTTTTCTTTTTTTTGGAAAAGTCTGCTTGTTGTAGCCCAGCAAAG  236

seq1  CCTCTAGAGGGAGCTCGATGCCTACTCTTAGTCTCCTCAGCCTGGTTAAT  295
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTAGAGGGAGCTCGATGCCTACTCTTAGTCTCCTCAGCCTGGTTAAT  286

seq1  AGCAGTACTTGCCTGGCACACAGAGGGGCTTATGCACAGCCCACACTGGC  345
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAGTACTTGCCTGGCACACAGAGGGGCTTATGCACAGCCCACACTGGC  336

seq1  CAGTGCTCCCTCCTGGCTCGCTCCTTCTAAGCTTTTTGGGTTATACCCCG  395
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTGCTCCCTCCTGGCTCGCTCCTTCTAAGCTTTTTGGGTTATACCCCG  386

seq1  AAGAAGAGCATCAATGACTAAGCTAGCCTGTTGCCACTCCAATTTCCGAG  445
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAGAGCATCAATGACTAAGCTAGCCTGTTGCCACTCCAATTTCCGAG  436

seq1  GTGGCCAAGGCCATGGACTGAAGAACAGAAAATCTTAGAAAGCCAGGGAA  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGCCAAGGCCATGGACTGAAGAACAGAAAATCTTAGAAAGCCAGGGAA  486

seq1  CAATTTTCAATTTTACGAGAGGCCAGAATACTGCCTACAACTTAGGACAA  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATTTTCAATTTTACGAGAGGCCAGAATACTGCCTACAACTTAGGACAA  536

seq1  GCCAATGCGTAAGTAGAGTGAGCTGCGGCCTAAATATGCCCAGCCCGCCC  595
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAATGCGTAAGTAGAGTGAGCTGCGGCCTAAATATGCCCAGCCCGCCC  586

seq1  ACCAGGAGAGCACCCACCTAGGAACGTGGGAGAAAGATTTTCTCCCTCGT  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAGGAGAGCACCCACCTAGGAACGTGGGAGAAAGATTTTCTCCCTCGT  636

seq1  GCTCATGCCTTAGGATACTCTAAGGGAGGTCACCATTCTAGGGCTGAATG  695
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCATGCCTTAGGATACTCTAAGGGAGGTCACCATTCTAGGGCTGAATG  686

seq1  CCCATTACAACCAGAGCTGCATCTGCCATCACTAACATACTCTCAGAGAA  745
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCATTACAACCAGAGCTGCATCTGCCATCACTAACATACTCTCAGAGAA  736

seq1  ACACAAGACAGCTCCCCCAGGCCTGGTTTTTTTTTTTTTTTCCTTCCATT  795
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACAAGACAGCTCCCCCAGGCCTGGTTTTTTTTTTTTTTTCCTTCCATT  786

seq1  TTTGTCAAATAGTACAAGGAAAAGATCTGAAACATTATTTTTCATGTTCA  845
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTCAAATAGTACAAGGAAAAGATCTGAAACATTATTTTTCATGTTCA  836

seq1  CAACTGGTAAAAGATGTGGTCTAAGTAAAGAGTATTAAATAAGTGGAGTT  895
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACTGGTAAAAGATGTGGTCTAAGTAAAGAGTATTAAATAAGTGGAGTT  886

seq1  CTAGTGTGCTCACTGGCCCAGTTCTCATATTCTGATAGACAGTCTCTCAC  945
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGTGTGCTCACTGGCCCAGTTCTCATATTCTGATAGACAGTCTCTCAC  936

seq1  CAGGCGGGCACGCTGTCACACAACTGTAATCCCAGCAACGAGGAAGCTAA  995
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGCGGGCACGCTGTCACACAACTGTAATCCCAGCAACGAGGAAGCTAA  986

seq1  CACAGGAGGGCCCTTAGGTCAAGGCACCCGAATTCAATCAAATCCGGGGA  1045
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGGAGGGCCCTTAGGTCAAGGCACCCGAATTCAATCAAATCCGGGGA  1036

seq1  TGTGCACTTGGAGAAGCGCATGATGTTGAATTC  1078
      |||||||||||||||||||||||||||||||||
seq2  TGTGCACTTGGAGAAGCGCATGATGTTGAATTC  1069