BAC Information

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BAC

Clone NameB6Ng01-009F08
Chromosome13 (Build37)15 (Build37)
Map Location 67,003,601 - 67,004,73127,539,743 - 27,539,841
singlet/doubletsingletsinglet
Overlap geneUqcrb
Upstream geneEG665897, LOC100041855, EG628746, LOC100042434, LOC100041892, EG665974, LOC100041915, 2410141K09Rik, C330014B19Rik, Mzf6d, Vmn2r-ps106, LOC666027, LOC100042492, LOC100041947, EG382769, LOC666052, EG432768, LOC666061
Downstream geneMterfd1, Ptdss1, Zfp712, Zfp708, Zfp759, Rsl1, LOC674699, Zfp455, Zfp458, Zfp457, A230042K10Rik, E130120F12Rik, Zfp456, 2810487A22Rik, Zfp459, C330011K17Rik, LOC666098, 9630025I21Rik, Zfp817, Zfp87, Zfp748, A530054K11Rik, LOC328277, 3830402I07Rik, EG666137, Zfp85-rs1, LOC674597, Zfp273, BC048507
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-009F08.bB6Ng01-009F08.g
ACCDH845302DH845303
length1,121301
definitionDH845302|Mus musculus domesticus DNA, BAC clone: B6Ng01-009F08, 5' end.DH845303|Mus musculus domesticus DNA, BAC clone: B6Ng01-009F08, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(67,003,601 - 67,004,731)(27,539,743 - 27,539,841)
sequence
gaattctttaaaagtactgaattcagggagaacaagagaaggaggaccac
agaatggatactcacccagtttattgaatcctgcagcattataataccac
tttcgaaaaccatccagccacttgcttgatgctgaaactataattaccac
aatgttagttgctacaatatacttacaaagcaatagaccaattggtaaag
aaccagttatcttataaacctaagaatccccttgtatacaatgtagataa
tcatttcactcatgacactgtgggaacaaatggtaaactcaaaactaaag
gtgcctaatagccacaggtatacttcctgccactttgggttctcagagtc
caacacccttctcctgctaccataagaactgaaggaccagagacaggaaa
ggatctgaagcacttctgtcttttgtagctgcggaaataactttttcttt
tccaaggaggtggagctataagatttcaggttaagtggcaggcctctagt
ctccaaaacttttagtttacattgtcttatttggctatcatccttaaaat
tataattttacataaaatataatttataattatttctagaaaaactttca
tactatcagctaatttaaataccaatatattagtaaaagaagcctatttt
ccttttctcaaacagcaaactgttcgtcaagggaataatagtatttgaac
atggataagaagaaacattcaatgttaaatttaaatctcttaatgtaaca
aagcatgcctgtaatctcagcatgcaggaagttgagactgtgaataccaa
gccttgtgtaaacaaacaaacaaacaaacaaacaaacagagatacaaaaa
ctaaaataggggctgggaatatggttcagccttagagttcgtgcctagca
tgcaaaaaactctattcaaaaacaaacttaaaccatttggggaagaagac
tgagcctgagagaggtaaaggagaagaggcaggaagcagagagtgcctga
tgttgaccagacgtggtacaggaagagatagagcaagcttaactttcttt
ttaaatgtgagggtaggggaggaactgtgactgccgaaggacgttgcttt
cttttcatttttgagatggca
tgcttaaaaccatatgactttagttttttgttatttgtttatttgttttg
ttttgttttttggagacttttaacaactgcttctatatccttaggggata
taggtttacttaaattgtttacctgatcttgatttccagttttgtgaagt
acaggttttttaagacctaatgattctttggattttcttggtatctgttg
ttatgtccccctttctcatttctgattttgttaatgtagtaatctctctc
tctctctctctctctctctctctctctctctctctctcactctctctctc
t
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_67003601_67004731
seq2: B6Ng01-009F08.b_50_1170

seq1  GAATTCTTTAAAAGTACTGAATTCAGGGAGAACAAGAGAAGGAGGACCAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTAAAAGTACTGAATTCAGGGAGAACAAGAGAAGGAGGACCAC  50

seq1  AGAATGGATACTCACCCAGTTTATTGAATCCTGCAGCATTATAATACCAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAATGGATACTCACCCAGTTTATTGAATCCTGCAGCATTATAATACCAC  100

seq1  TTTCGAAAACCATCCAGCCACTTGCTTGATGCTGAAACTATAATTACCAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCGAAAACCATCCAGCCACTTGCTTGATGCTGAAACTATAATTACCAC  150

seq1  AATGTTAGTTGCTACAATATACTTACAAAGCAATAGACCAATTGGTAAAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTTAGTTGCTACAATATACTTACAAAGCAATAGACCAATTGGTAAAG  200

seq1  AACCAGTTATCTTATAAACCTAAGAATCCCCTTGTATACAATGTAGATAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCAGTTATCTTATAAACCTAAGAATCCCCTTGTATACAATGTAGATAA  250

seq1  TCATTTCACTCATGACACTGTGGGAACAAATGGTAAACTCAAAACTAAAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTTCACTCATGACACTGTGGGAACAAATGGTAAACTCAAAACTAAAG  300

seq1  GTGCCTAATAGCCACAGGTATACTTCCTGCCACTTTGGGTTCTCAGAGTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCCTAATAGCCACAGGTATACTTCCTGCCACTTTGGGTTCTCAGAGTC  350

seq1  CAACACCCTTCTCCTGCTACCATAAGAACTGAAGGACCAGAGACAGGAAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACACCCTTCTCCTGCTACCATAAGAACTGAAGGACCAGAGACAGGAAA  400

seq1  GGATCTGAAGCACTTCTGTCTTTTGTAGCTGCGGAAATAACTTTTTCTTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATCTGAAGCACTTCTGTCTTTTGTAGCTGCGGAAATAACTTTTTCTTT  450

seq1  TCCAAGGAGGTGGAGCTATAAGATTTCAGGTTAAGTGGCAGGCCTCTAGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAAGGAGGTGGAGCTATAAGATTTCAGGTTAAGTGGCAGGCCTCTAGT  500

seq1  CTCCAAAACTTTTAGTTTACATTGTCTTATTTGGCTATCATCCTTAAAAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCAAAACTTTTAGTTTACATTGTCTTATTTGGCTATCATCCTTAAAAT  550

seq1  TATAATTTTACATAAAATATAATTTATAATTATTTCTAGAAAAACTTTCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAATTTTACATAAAATATAATTTATAATTATTTCTAGAAAAACTTTCA  600

seq1  TACTATCAGCTAATTTAAATACCAATATATTAGTAAAAGAAGCCTATTTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTATCAGCTAATTTAAATACCAATATATTAGTAAAAGAAGCCTATTTT  650

seq1  CCTTTTCTCAAACAGCAAACTGTTCGTCAAGGGAATAATAGTATTTGAAC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTTCTCAAACAGCAAACTGTTCGTCAAGGGAATAATAGTATTTGAAC  700

seq1  ATGGATAAGAAGAAACATTCAATGTTAAATTTAAATCTCTTAATGTAACA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGATAAGAAGAAACATTCAATGTTAAATTTAAATCTCTTAATGTAACA  750

seq1  AAGCATGCCTGTAATCTCAGCATGCAGGAAGTTGAGACTGTGAATACCAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCATGCCTGTAATCTCAGCATGCAGGAAGTTGAGACTGTGAATACCAA  800

seq1  GCCTTGTGTAAACAAACAAACAAACAAACAAACAAACAGAGATACAAAAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTTGTGTAAACAAACAAACAAACAAACAAACAAACAGAGATACAAAAA  850

seq1  CTAAAATAGGGGCTGGGAATATGGTTCAGCCTTAGAGTTCGTGCCTAGCA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAAATAGGGGCTGGGAATATGGTTCAGCCTTAGAGTTCGTGCCTAGCA  900

seq1  TGCAAAAAACTCTATTCAAAAACAAACTTAAACCATTTGGGGAAGAAGAC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAAAAAACTCTATTCAAAAACAAACTTAAACCATTTGGGGAAGAAGAC  950

seq1  TGAGCCTGAGAGAGGTAAAGGAGAAGAGGCAAGGAAGCAGGAGAGTGCCT  1000
      |||||||||||||||||||||||||||||| |||||||| ||||||||||
seq2  TGAGCCTGAGAGAGGTAAAGGAGAAGAGGC-AGGAAGCA-GAGAGTGCCT  998

seq1  GATGTTGACCAGACGTGGTACAAGAAAGAAGATAGAGCAAGCTTAACCTT  1050
      |||||||||||||||||||||| |||   ||||||||||||||||| |||
seq2  GATGTTGACCAGACGTGGTACAGGAA--GAGATAGAGCAAGCTTAA-CTT  1045

seq1  TCTTTTTAAAATGTGAGGGGTAGGGGAGGGAACATGTGACTGCCAGAGGA  1100
      ||||||| |||||||| |||||||||| ||||| ||||||||||  ||||
seq2  TCTTTTT-AAATGTGA-GGGTAGGGGA-GGAAC-TGTGACTGCCGAAGGA  1091

seq1  CGTTGTCATCCTTTTCATTTTTGAGATGGCA  1131
      ||||| | | |||||||||||||||||||||
seq2  CGTTG-CTTTCTTTTCATTTTTGAGATGGCA  1121

seq1: chr15_27539743_27539841
seq2: B6Ng01-009F08.g_101_373 (reverse)

seq1  AGAGGGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAG  50
      |||| ||||||| |||||||||||||||||||||||||||||||||||||
seq2  AGAGAGAGAGAGTGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAG  50

seq1  AGAGAGAGAT---AAAATTTACAAAA-AACAAA--ACAAA-----ACAAA  89
      ||||||||||    | ||| ||||||  | |||  | |||     ||| |
seq2  AGAGAGAGATTACTACATTAACAAAATCAGAAATGAGAAAGGGGGACATA  100

seq1  AAAACTAACA----------------------------------------  99
      | |||  | |                                        
seq2  ACAACAGATACCAAGAAAATCCAAAGAATCATTAGGTCTTAAAAAACCTG  150

seq1  --------------------------------------------------  99
                                                        
seq2  TACTTCACAAAACTGGAAATCAAGATCAGGTAAACAATTTAAGTAAACCT  200

seq1  --------------------------------------------------  99
                                                        
seq2  ATATCCCCTAAGGATATAGAAGCAGTTGTTAAAAGTCTCCAAAAAACAAA  250

seq1  -----------------------  99
                             
seq2  ACAAAACAAATAAACAAATAACA  273