BAC Information

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BAC

Clone NameB6Ng01-009L12
Chromosome15 (Build37)
Map Location 78,793,095 - 78,993,438
singlet/doubletdoublet
Overlap geneTriobp, H1f0, Gcat, Galr3, LOC100042603, Ankrd54, Eif3s6ip, 1700088E04Rik, Polr2f, Sox10
Upstream geneEif3s7, Cacng2, Rabl4, Pvalb, Ncf4, Csf2rb2, Csf2rb1, 1700061J05Rik, Tst, Mpst, Kctd17, Tmprss6, Il2rb, C1qtnf6, Sstr3, EG626952, Rac2, Pscd4, Lrrc62, Mfng, Card10, LOC641104, LOC100041601, Cdc42ep1, Lgals2, Gga1, Sh3bp1, Pdxp, Lgals1, Nol12
Downstream geneLOC100041655, Pick1, Slc16a8, Baiap2l2, Pla2g6, Maff, 4732495E13Rik, Csnk1e, LOC675798, LOC100041676, Kcnj4, Kdelr3, Ddx17, Dmc1, 4933432B09Rik, Pgea1, Tomm22, Josd1, Gtpbp1, Unc84b, Dnalc4, Npcd, Nptxr, Cbx6, LOC100042748, Apobec3, Cbx7, Pdgfb, Rpl3, Syngr1, Map3k7ip1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-009L12.bB6Ng01-009L12.g
ACCDH845587DH845588
length468491
definitionDH845587|Mus musculus domesticus DNA, BAC clone: B6Ng01-009L12, 5' end.DH845588|Mus musculus domesticus DNA, BAC clone: B6Ng01-009L12, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(78,992,965 - 78,993,438)(78,793,095 - 78,793,591)
sequence
tgtgggtggtgggcagggaaggtaacatgggggtgtgggggaaagcttca
caccagacctccactatatcgcacattcacagtgtgccgctgccacccgt
ttgtggggtcgggagtgtgggggaaactttgggagagagctggtctagct
gtagatgccgggggtacggaagcaaccagatggagagcctgggtcagggt
gaggagggctctgcaaggaaaacaaggaacccagagaaagcagagtgaag
aacttccatctccgctcccacagtgtctctcctgttccagctgccctggg
gaaccttcctgactccagtgtctaaactgagagcttctttatccccagga
gagggcacactaaaagaggccttcccctccagttgtggtcctgagctacc
aagctcttcactcctttctccagcgccatcttccctccctgggctccacc
caatggttgagctacctc
cagggagagaggttgcttggcaaccaggatgtttcagggtactcacaatg
tcccctcagaccacacttgacctacagggaaggattccctgaggccaggg
atactgcagcaaccaagaagccactcagtgtcagacaaactgccctccct
gatgtgacttctggggacagggtcgcacacaggaccttggtgtgtggggg
tgcatgcctgtgacctggtgcaagtgagctttggactatatgtagctgag
gctggtccagaattcctgatcctcctgtctccacctcctccatgctggga
ttactgatggggccctacccagtcaggctttgttttgtggctcttgaaag
tgggtggtaccctctcggtgacctacttagccagaatctgtggccactgt
ccacctggtggccacttgctacattgcagtcaggggctaactaggcacat
cccagctggcacagctcactagggagggtgaggggggtgca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr15_78992965_78993438
seq2: B6Ng01-009L12.b_47_520 (reverse)

seq1  GAGGTTGCTCAACCATTGGGTGGAGCCCAGGGAGGGAAGATGGCGCTGGA  50
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGTAGCTCAACCATTGGGTGGAGCCCAGGGAGGGAAGATGGCGCTGGA  50

seq1  GAAAGGAGTGAAGAGCTTGGTAGCTCAGGGCCACAGCTGGAGGGGAAGGC  100
      ||||||||||||||||||||||||||||| ||||| ||||||||||||||
seq2  GAAAGGAGTGAAGAGCTTGGTAGCTCAGGACCACAACTGGAGGGGAAGGC  100

seq1  CTCTTTTTGTGTGCCCTCTCCTGGGGATAAAGAAGCTCTCAGTCTAGACA  150
      ||||||| ||||||||||||||||||||||||||||||||||| ||||||
seq2  CTCTTTTAGTGTGCCCTCTCCTGGGGATAAAGAAGCTCTCAGTTTAGACA  150

seq1  CTGGAGTCAGGAAGGTTCCCCAGGGCAGCTGGAACAGGAGAGACACTGTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGAGTCAGGAAGGTTCCCCAGGGCAGCTGGAACAGGAGAGACACTGTG  200

seq1  GGAGCGGAGATGGAAGTTCTTCACTCTGCTTTCTCTGGGTTCCTTGTTTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGCGGAGATGGAAGTTCTTCACTCTGCTTTCTCTGGGTTCCTTGTTTT  250

seq1  CCTTGCAGAGCCCTCCTCACCCTGACCCAGGCTCTCCATCTGGTTGCTTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTGCAGAGCCCTCCTCACCCTGACCCAGGCTCTCCATCTGGTTGCTTC  300

seq1  CGTACCCCCGGCATCTACAGCTAGACCAGCTCTCTCCCAAAGTTTCCCCC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTACCCCCGGCATCTACAGCTAGACCAGCTCTCTCCCAAAGTTTCCCCC  350

seq1  ACACTCCCGACCCCACAAACGGGTGGCAGCGGCACACTGTGAATGTGCGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACTCCCGACCCCACAAACGGGTGGCAGCGGCACACTGTGAATGTGCGA  400

seq1  TCTAGTGGAGGTCTGGTGTGAAGCTTTCCCCCACACCCCCATGTTGCCTT  450
      | ||||||||||||||||||||||||||||||||||||||||||| ||||
seq2  TATAGTGGAGGTCTGGTGTGAAGCTTTCCCCCACACCCCCATGTTACCTT  450

seq1  CCCTGCCCACCACCCACAGAATTC  474
      ||||||||||||||||||||||||
seq2  CCCTGCCCACCACCCACAGAATTC  474

seq1: chr15_78793095_78793591
seq2: B6Ng01-009L12.g_70_566

seq1  GAATTCCAGGGTGAGAGGTTGCTTGGCAACCAGGATGTTTCAGGGTACTC  50
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAGGGAGAGAGGTTGCTTGGCAACCAGGATGTTTCAGGGTACTC  50

seq1  ACAATGTCCCCTCAGACCACACTTGACCTACAGGGAAGGATTCCCTGAGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAATGTCCCCTCAGACCACACTTGACCTACAGGGAAGGATTCCCTGAGG  100

seq1  CCAGGGATACTGCAGCAACCAAGAAGCCACTCAGTGTCAGACAAACTGCC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGGGATACTGCAGCAACCAAGAAGCCACTCAGTGTCAGACAAACTGCC  150

seq1  CTCCCTGATGTGACTTCTGGGGACAGGGTCGCACACAGGACCTTGGTGTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCCTGATGTGACTTCTGGGGACAGGGTCGCACACAGGACCTTGGTGTG  200

seq1  TGGGGGTGCATGCCTGTGACCTGGTGCAAGTGAGCTTTGGACTATATGTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGGGTGCATGCCTGTGACCTGGTGCAAGTGAGCTTTGGACTATATGTA  250

seq1  GCTGAGGCTGGTCCAGAATTCCTGATCCTCCTGTCTCCACCTCCTCCATG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGAGGCTGGTCCAGAATTCCTGATCCTCCTGTCTCCACCTCCTCCATG  300

seq1  CTGGGATTACTGATGGGGCCCTACCCAGTCAGGCTTTGTTTTGTGGCTCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGGATTACTGATGGGGCCCTACCCAGTCAGGCTTTGTTTTGTGGCTCT  350

seq1  TGAAAGTGGGTGGTACCCTCTCGGTGACCTACTTAGCCAGAATCTGTGGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAAGTGGGTGGTACCCTCTCGGTGACCTACTTAGCCAGAATCTGTGGC  400

seq1  CACTGTCCACCTGGTGGCCACTTGCTACATTGCAGTCAGGGGCTAACTAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTGTCCACCTGGTGGCCACTTGCTACATTGCAGTCAGGGGCTAACTAG  450

seq1  GCACATCCCAGCTGGCACAGCTCACTAGGGAGGGTGAGGGGGGTGCA  497
      |||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACATCCCAGCTGGCACAGCTCACTAGGGAGGGTGAGGGGGGTGCA  497