BAC Information

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BAC

Clone NameB6Ng01-011C12
Chromosome15 (Build37)
Map Location 6,966,538 - 7,101,622
singlet/doubletdoublet
Overlap geneLifr
Upstream geneLOC666323, Dab2, C9, LOC100039396, LOC100039412, Fyb, LOC100039453, EG665511, 4921505C17Rik, Osmr
Downstream geneEgflam, Gdnf, Wdr70, LOC665556, LOC621001, Nup155
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-011C12.bB6Ng01-011C12.g
ACCDH846616DH846617
length544362
definitionDH846616|Mus musculus domesticus DNA, BAC clone: B6Ng01-011C12, 5' end.DH846617|Mus musculus domesticus DNA, BAC clone: B6Ng01-011C12, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(7,101,073 - 7,101,622)(6,966,538 - 6,966,899)
sequence
ttagactttttttttttttaggtattccagactccaagcaaacagcacct
tcagactccataccttgcaagattatttcctatgtttaattatcttaaaa
gattttaaaatgttcttaagccctcctgttgaagacgagttattatatag
aatagacttatccaactgttacatggaaagaagaaagtccggcgttgtcc
tcaatgaacagtctgacacggtcaggtatcttgaagcccagggcagggct
ggatggagcctgccccacgtggcagggcactcatctgtccacaatgtgcc
tggaagtcttgagctccttccggggaaatggtacatctgcgcgtacaatc
tgccttgatttgtactcagcaccgcagagtctgggtccaggtccatgagg
ttctggactctctgctgaggctaacccaaaaaagtaagctgagaaaagtc
aagcttaagccagaagctatggtcctgatagactgtgtttagtccatttc
tggttttcctatttgtttttgggagagggttggggagagaggaa
caagattgttcccagaccatctgaaacacccttatctcgctgaggagact
ggggaaagaaggaagaaggagttggcttgcctttgctaggaaaaattgaa
gagcctttgcctgaagaacagtgtcacgctgaagagactgaagaacagat
tggtgtttaccagcctcagccagaaaaactgtatacctatagtctctgaa
gaaaaaaacaaacaacaacaacaaaaacaagccaaagtcacaaggagaat
gtgaacagacacaagcaaagcaaagctcaatactaagaaatttgaatttg
caaagagaaagcaagttaaagaagcccaaggcagaagaagaaggaggagg
agggggaggggg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr15_7101073_7101622
seq2: B6Ng01-011C12.b_42_591 (reverse)

seq1  TTCCTCTCTCCCCAACCCTCTCCCAAAAACAAATAGGAAAACCAGAAATG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTCTCTCCCCAACCCTCTCCCAAAAACAAATAGGAAAACCAGAAATG  50

seq1  GACTAAACACAGTCTATCAGGACCATAGCTTCTGGCTTAAGCTTGACTTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTAAACACAGTCTATCAGGACCATAGCTTCTGGCTTAAGCTTGACTTT  100

seq1  TCTCAGCTTACTTTTTTGGGTTAGCCTCAGCAGAGAGTCCAGAACCTCAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCAGCTTACTTTTTTGGGTTAGCCTCAGCAGAGAGTCCAGAACCTCAT  150

seq1  GGACCTGGACCCAGACTCTGCGGTGCTGAGTACAAATCAAGGCAGATTGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACCTGGACCCAGACTCTGCGGTGCTGAGTACAAATCAAGGCAGATTGT  200

seq1  ACGCGCAGATGTACCATTTCCCCGGAAGGAGCTCAAGACTTCCAGGCACA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGCGCAGATGTACCATTTCCCCGGAAGGAGCTCAAGACTTCCAGGCACA  250

seq1  TTGTGGACAGATGAGTGCCCTGCCACGTGGGGCAGGCTCCATCCAGCCCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTGGACAGATGAGTGCCCTGCCACGTGGGGCAGGCTCCATCCAGCCCT  300

seq1  GCCCTGGGCTTCAAGATACCTGACCGTGTCAGACTGTTCATTGAGGACAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCTGGGCTTCAAGATACCTGACCGTGTCAGACTGTTCATTGAGGACAA  350

seq1  CGCCGGACTTTCTTCTTTCCATGTAACAGTTGGATAAGTCTATTCTATAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCCGGACTTTCTTCTTTCCATGTAACAGTTGGATAAGTCTATTCTATAT  400

seq1  AATAACTCGTCTTCAACAGGAGGGCTTAAGAACATTTTAAAATCTTTTAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAACTCGTCTTCAACAGGAGGGCTTAAGAACATTTTAAAATCTTTTAA  450

seq1  GATAATTAAACATAGGAAATAATCTTGCAAGGTATGGAGTCTGAAGGTGC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAATTAAACATAGGAAATAATCTTGCAAGGTATGGAGTCTGAAGGTGC  500

seq1  TGTTTGCTTGGAGTCTGGAATACCTAAAAAAAAAAAAAGTCTAAGAATTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTGCTTGGAGTCTGGAATACCTAAAAAAAAAAAAAGTCTAAGAATTC  550

seq1: chr15_6966538_6966899
seq2: B6Ng01-011C12.g_73_434

seq1  CAAGATTGTTCCCAGACCATCTGAAACACCCTTATCTCGCTGAGGAGACT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGATTGTTCCCAGACCATCTGAAACACCCTTATCTCGCTGAGGAGACT  50

seq1  GGGGAAAGAAGGAAGAAGGAGTTGGCTTGCCTTTGCTAGGAAAAATTGAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGAAAGAAGGAAGAAGGAGTTGGCTTGCCTTTGCTAGGAAAAATTGAA  100

seq1  GAGCCTTTGCCTGAAGAACAGTGTCACGCTGAAGAGACTGAAGAACAGAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCCTTTGCCTGAAGAACAGTGTCACGCTGAAGAGACTGAAGAACAGAT  150

seq1  TGGTGTTTACCAGCCTCAGCCAGAAAAACTGTATACCTATAGTCTCTGAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTGTTTACCAGCCTCAGCCAGAAAAACTGTATACCTATAGTCTCTGAA  200

seq1  GAAAAAAACAAACAACAACAACAAAAACAAGCCAAAGTCACAAGGAGAAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAAAAACAAACAACAACAACAAAAACAAGCCAAAGTCACAAGGAGAAT  250

seq1  GTGAACAGACACAAGCAAAGCAAAGCTCAATACTAAGAAATTTGAATTTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAACAGACACAAGCAAAGCAAAGCTCAATACTAAGAAATTTGAATTTG  300

seq1  CAAAGAGAAAGCAAGTTAAAGAAGCCCAAGGCAGAAGAAGAAGGAGGAGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGAGAAAGCAAGTTAAAGAAGCCCAAGGCAGAAGAAGAAGGAGGAGG  350

seq1  AGGGGGAGGGGG  362
      ||||||||||||
seq2  AGGGGGAGGGGG  362