BAC Information

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BAC

Clone NameB6Ng01-011E21
Chromosome15 (Build37)
Map Location 72,301,763 - 72,511,958
singlet/doubletdoublet
Overlap geneKcnk9, 1810044A24Rik
Upstream geneLOC100040847, Col22a1
Downstream geneLOC665621, Peg13, LOC100041120, Chrac1, Eif2c2, Ptk2, LOC666053, LOC100040929, Dennd3, Slc45a4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-011E21.bB6Ng01-011E21.g
ACCDH846725DH846726
length1,1321,011
definitionDH846725|Mus musculus domesticus DNA, BAC clone: B6Ng01-011E21, 5' end.DH846726|Mus musculus domesticus DNA, BAC clone: B6Ng01-011E21, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(72,301,763 - 72,302,888)(72,510,954 - 72,511,958)
sequence
gaattcatcattgtggtgattttgaatatgtttggcctagggagtggcac
tattaggaggtatggccttgctgaagtaagtgtggcctttgtggtagaag
tgtgtcactgtgggggttggctttgagaccctcctcctagctccctggga
gacaatcttctggctgcctttggattgagatgtagaactttccagcccaa
tgtctgcttggatgctgccatgcttccagacatgttgataatggactgaa
cctcagaacctgtaagccagccccaattaaatgttctcctttataagagt
tgtgttggtcatagctcctcacagcaatggaaaccctaacaaagacaatc
atcttaaatggaaaattagattaggaatcaacagaattatggaaatcaat
taaatcttaccttatcattgacatttctgcaaagtacattttgctctgca
ttgctgataaaccacagatcactaatttttctaagtgaataattaagaaa
ctcataagatttatcaaacacccaccttggccaagacacaaacatattct
gaaataagcatctgacaaatttagcaatggaaatctcatgtcttcaatta
agtgttataattgattgttgagaaaatgtctttccaaacaattactttca
aaacttcatgaatgctgagcactaaattctcccaattatctctttacatt
tcaggacaaatggaaatcgaagatcagaactctttagtacaaaaaataaa
gtttttccttcctacctattttactttttttccaaatttagtgctttttt
ttttgaccatttcagaacatctgcatttcttaatccaatagactccataa
attaattctttgggttgactcttatttgcttaaatgagctcatccaaaat
tcactatatctccggtatcctcacgaactataagtctaaaaactgtattc
tgccaggtctggtatcttccggggccctaaatatatttacaatattttaa
tgagaaattgctcatgctaaggctcaaagcaaaatggaactgggtccact
actcattttctaggtatattgaattggccgattggaagcttcggtgcgct
cagattcctgagagacctgtctcagaactaaa
gaattctgtgtcttctgagattctgcagtgattggtctgtgctgtctctc
tgggcctgcagtgaatacagatcagggatgcattgcattgtgaagtgggt
atttccagttctctggattcagacagccttcatgcagatacacatgtgtg
ctgagctcttagctctaccctgagggcagcaaaccaggagcaggaataga
tagtgccaatttaggtagtggcaaatcctggggacttcactgagagacac
tcactgccctgccttgcctctaagaacatgtgactccctcacatttgcag
agaacagttcaggtctctagctctttgtcacatgcatttcttaagacctg
cacaggtccccaaggtcgtcactactgttccttccgacaaataataatac
actcaggggccagttatgcctcaggtcatggagatacagatcagggttgt
atgggctgatggatttatccagtctttcaatcaaaacctactggccatgt
tctatagtaggtgcttccgtgtgtgctggaaacccatccctgcctaggag
acatcttctttctgctgaagggtaggagacccaggctggtcctcaagttg
tttgaccacatcctgttgtgtgctagcctggaagctggcacaaaaatgtt
ctggaagcagcaaaagtaggcagagctagagctggatccccagtcaacat
attgaaaatgaggcatcagtctaccggggatgaccatggaccccgtggac
accaacagaactcacaggcctcctttcggaacagagcacctgaggtggct
ctggggttttctgtgtccataatgatttctttttcttcccttcacatgta
tttaaatctgcattcaatcactgtcttaagatcgctgctgcttgcagtga
aacaccacgaccaaaaagtaagtagaggaggaaaggtttatttgatttat
tactttctcatcactgttcatccccaaaggaattcaggactgaactctca
cgaagcaagaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr15_72301763_72302888
seq2: B6Ng01-011E21.b_43_1174

seq1  GAATTCATCATTGTGGTGATTTTGAATATGTTTGGCCTAGGGAGTGGCAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATCATTGTGGTGATTTTGAATATGTTTGGCCTAGGGAGTGGCAC  50

seq1  TATTAGGAGGTATGGCCTTGCTGAAGTAAGTGTGGCCTTTGTGGTAGAAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTAGGAGGTATGGCCTTGCTGAAGTAAGTGTGGCCTTTGTGGTAGAAG  100

seq1  TGTGTCACTGTGGGGGTTGGCTTTGAGACCCTCCTCCTAGCTCCCTGGGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTCACTGTGGGGGTTGGCTTTGAGACCCTCCTCCTAGCTCCCTGGGA  150

seq1  GACAATCTTCTGGCTGCCTTTGGATTGAGATGTAGAACTTTCCAGCCCAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAATCTTCTGGCTGCCTTTGGATTGAGATGTAGAACTTTCCAGCCCAA  200

seq1  TGTCTGCTTGGATGCTGCCATGCTTCCAGACATGTTGATAATGGACTGAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTGCTTGGATGCTGCCATGCTTCCAGACATGTTGATAATGGACTGAA  250

seq1  CCTCAGAACCTGTAAGCCAGCCCCAATTAAATGTTCTCCTTTATAAGAGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCAGAACCTGTAAGCCAGCCCCAATTAAATGTTCTCCTTTATAAGAGT  300

seq1  TGTGTTGGTCATAGCTCCTCACAGCAATGGAAACCCTAACAAAGACAATC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTTGGTCATAGCTCCTCACAGCAATGGAAACCCTAACAAAGACAATC  350

seq1  ATCTTAAATGGAAAATTAGATTAGGAATCAACAGAATTATGGAAATCAAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTTAAATGGAAAATTAGATTAGGAATCAACAGAATTATGGAAATCAAT  400

seq1  TAAATCTTACCTTATCATTGACATTTCTGCAAAGTACATTTTGCTCTGCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATCTTACCTTATCATTGACATTTCTGCAAAGTACATTTTGCTCTGCA  450

seq1  TTGCTGATAAACCACAGATCACTAATTTTTCTAAGTGAATAATTAAGAAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCTGATAAACCACAGATCACTAATTTTTCTAAGTGAATAATTAAGAAA  500

seq1  CTCATAAGATTTATCAAACACCCACCTTGGCCAAGACACAAACATATTCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCATAAGATTTATCAAACACCCACCTTGGCCAAGACACAAACATATTCT  550

seq1  GAAATAAGCATCTGACAAATTTAGCAATGGAAATCTCATGTCTTCAATTA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATAAGCATCTGACAAATTTAGCAATGGAAATCTCATGTCTTCAATTA  600

seq1  AGTGTTATAATTGATTGTTGAGAAAATGTCTTTCCAAACAATTACTTTCA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGTTATAATTGATTGTTGAGAAAATGTCTTTCCAAACAATTACTTTCA  650

seq1  AAACTTCATGAATGCTGAGCACTAAATTCCCCCAATTATCTCTTTACATT  700
      ||||||||||||||||||||||||||||| ||||||||||||||||||||
seq2  AAACTTCATGAATGCTGAGCACTAAATTCTCCCAATTATCTCTTTACATT  700

seq1  TCAGGACAAATGGAAATCGAAGATCAGAACTCTTTAGTACAAAAAATAAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  TCAGGACAAATGGAAATCGAAGATCAGAACTCTTTAGTACAAAAAAT-AA  749

seq1  AGTTTTTCCTTCCTACCTATTTTAC-TTTTTTCCAAATTTAGTGCTTTTT  799
      ||||||||||||||||||||||||| ||||||||||||||||||||||||
seq2  AGTTTTTCCTTCCTACCTATTTTACTTTTTTTCCAAATTTAGTGCTTTTT  799

seq1  TTTTTGACCATTTCAGAACATCTGCATTTCTTAATCCAATAGACTCCATA  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTGACCATTTCAGAACATCTGCATTTCTTAATCCAATAGACTCCATA  849

seq1  AATT-ATTCTTTGGGTTGACTCTTATTTGCTTAAATGAGC-CATCCAAAA  897
      |||| ||||||||||||||||||||||||||||||||||| |||||||||
seq2  AATTAATTCTTTGGGTTGACTCTTATTTGCTTAAATGAGCTCATCCAAAA  899

seq1  TTCACTATATCTCCGGTATCC-CAGGAACTATAAGTCTAGAAACTGTA-T  945
      ||||||||||||||||||||| || |||||||||||||| |||||||| |
seq2  TTCACTATATCTCCGGTATCCTCACGAACTATAAGTCTAAAAACTGTATT  949

seq1  CTGCCAGGACCTGGTATC-TCCGGGGCCCTAAATATAATTTACATATTTT  994
      ||||||||  |||||||| ||||||||||||||||| |||||||   |||
seq2  CTGCCAGG-TCTGGTATCTTCCGGGGCCCTAAATAT-ATTTACAATATTT  997

seq1  TAATGAG-AATTGCTCATGCTAAGCCTCAAAGCAAAATTGAAACTGGTCC  1043
      ||||||| |||||||||||||||| ||||||||||||| |||   |||||
seq2  TAATGAGAAATTGCTCATGCTAAGGCTCAAAGCAAAATGGAACTGGGTCC  1047

seq1  ACTTACTCA-TCTCTA-GTATATTGATTTGCCAGA-TGGAAGCTTCGGTG  1090
      || |||||| | |||| ||||||||| ||| | || ||||||||||||||
seq2  AC-TACTCATTTTCTAGGTATATTGAATTGGCCGATTGGAAGCTTCGGTG  1096

seq1  CGCTCAGTTTTCCTGA-AGACCTGCCTCAGAACTAAA  1126
      |||||||  ||||||| ||||||| ||||||||||||
seq2  CGCTCAG-ATTCCTGAGAGACCTGTCTCAGAACTAAA  1132

seq1: chr15_72510954_72511958
seq2: B6Ng01-011E21.g_66_1076 (reverse)

seq1  TTCTTGCTCTGTGTGAGTTCCTGTCCTGACTTCCTTTGGTGATGAACAGT  50
      ||||||||  ||| ||||| | ||||||| ||||||||| ||||||||||
seq2  TTCTTGCTTCGTGAGAGTT-CAGTCCTGAATTCCTTTGGGGATGAACAGT  49

seq1  GATGTGGAAGT-ATAAGTCAAATAAACCCTTTCCTCCTCTACTTGCTTTT  99
      |||| | |||| |||| ||||||||| ||||||||||||||||| |||||
seq2  GATGAGAAAGTAATAAATCAAATAAA-CCTTTCCTCCTCTACTTACTTTT  98

seq1  TGGTCGTGGTGTTTCACTGC-AGCAGCAGCGATCCTAAGACAGTGATTGA  148
      |||||||||||||||||||| ||||||||||||| |||||||||||||||
seq2  TGGTCGTGGTGTTTCACTGCAAGCAGCAGCGATCTTAAGACAGTGATTGA  148

seq1  ATGCAGA-TTAAATACATGTGGAGGG-AGAGAA--GAATCATT-TGGACA  193
      ||||||| ||||||||||||| |||| ||| ||   ||||||| ||||||
seq2  ATGCAGATTTAAATACATGTGAAGGGAAGAAAAAGAAATCATTATGGACA  198

seq1  CAGAAAGCCCCAGAGCCACCTTCAGGTGCTCTGTTCCG-AAGGAGGCCTG  242
      |||||| ||||||||||||| ||||||||||||||||| |||||||||||
seq2  CAGAAAACCCCAGAGCCACC-TCAGGTGCTCTGTTCCGAAAGGAGGCCTG  247

seq1  TGAGTTCTGTTGGTGTCCACGGGGTCCATGGTCATCCCCGGTAGACTGAT  292
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGTTCTGTTGGTGTCCACGGGGTCCATGGTCATCCCCGGTAGACTGAT  297

seq1  GCCTCATTTTCAATATGTTGACTGGGGATCCAGCTCTAGCTCTGCCTACT  342
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTCATTTTCAATATGTTGACTGGGGATCCAGCTCTAGCTCTGCCTACT  347

seq1  TTTGCTGCTTCCAGAACA-TTTTGTGCCAGCTTCCAGGCTAGCACACAAC  391
      |||||||||||||||||| |||||||||||||||||||||||||||||||
seq2  TTTGCTGCTTCCAGAACATTTTTGTGCCAGCTTCCAGGCTAGCACACAAC  397

seq1  AGGATGTGGTCAAACAACTTGAGGACCAGCCTGGGTCTCCTACCCTTCAG  441
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGATGTGGTCAAACAACTTGAGGACCAGCCTGGGTCTCCTACCCTTCAG  447

seq1  CAGAAAGAAGATGTCTCCTAGGCAGGGATGGGTTTCCAGCACACACGGAA  491
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAAAGAAGATGTCTCCTAGGCAGGGATGGGTTTCCAGCACACACGGAA  497

seq1  GCACCTACTATAGAACATGGCCAGTAGGTTTTGATTGAAAGACTGGATAA  541
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACCTACTATAGAACATGGCCAGTAGGTTTTGATTGAAAGACTGGATAA  547

seq1  ATCCATCAGCCCATACAACCCTGATCTGTATCTCCATGACCTGAGGCATA  591
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCATCAGCCCATACAACCCTGATCTGTATCTCCATGACCTGAGGCATA  597

seq1  ACTGGCCCCTGAGTGTATTATTATTTGTCGGAAGGAACAGTAGTGACGAC  641
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGGCCCCTGAGTGTATTATTATTTGTCGGAAGGAACAGTAGTGACGAC  647

seq1  CTTGGGGACCTGTGCAGGTCTTAAGAAATGCATGTGACAAAGAGCTAGAG  691
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGGGGACCTGTGCAGGTCTTAAGAAATGCATGTGACAAAGAGCTAGAG  697

seq1  ACCTGAACTGTTCTCTGCAAATGTGAGGGAGTCACATGTTCTTAGAGGCA  741
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTGAACTGTTCTCTGCAAATGTGAGGGAGTCACATGTTCTTAGAGGCA  747

seq1  AGGCAGGGCAGTGAGTGTCTCTCAGTGAAGTCCCCAGGATTTGCCACTAC  791
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCAGGGCAGTGAGTGTCTCTCAGTGAAGTCCCCAGGATTTGCCACTAC  797

seq1  CTAAATTGGCACTATCTATTCCTGCTCCTGGTTTGCTGCCCTCAGGGTAG  841
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAATTGGCACTATCTATTCCTGCTCCTGGTTTGCTGCCCTCAGGGTAG  847

seq1  AGCTAAGAGCTCAGCACACATGTGTATCTGCATGAAGGCTGTCTGAATCC  891
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTAAGAGCTCAGCACACATGTGTATCTGCATGAAGGCTGTCTGAATCC  897

seq1  AGAGAACTGGAAATACCCACTTCACAATGCAATGCATCCCTGATCTGTAT  941
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAACTGGAAATACCCACTTCACAATGCAATGCATCCCTGATCTGTAT  947

seq1  TCACTGCAGGCCCAGAGAGACAGCACAGACCAATCACTGCAGAATCTCAG  991
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACTGCAGGCCCAGAGAGACAGCACAGACCAATCACTGCAGAATCTCAG  997

seq1  AAGACACAGAATTC  1005
      ||||||||||||||
seq2  AAGACACAGAATTC  1011