BAC Information

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BAC

Clone NameB6Ng01-013E09
Chromosome15 (Build37)
Map Location 23,634,982 - 23,783,539
singlet/doubletdoublet
Overlap genenone
Upstream geneEG545091, Cdh18, LOC624863
Downstream geneLOC666989, LOC666999, LOC100040492, LOC100040499
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-013E09.bB6Ng01-013E09.g
ACCDH848135DH848136
length6451,049
definitionDH848135|Mus musculus domesticus DNA, BAC clone: B6Ng01-013E09, 5' end.DH848136|Mus musculus domesticus DNA, BAC clone: B6Ng01-013E09, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(23,634,982 - 23,635,626)(23,782,486 - 23,783,539)
sequence
gaattcacattatcattggattgcttttataccagggctgttgagcatct
ccccatcctaatttgaatctcaaatttagaatcctgaggtaaataaatat
tttacttgttcattatcagagattaggcatgtgggttgagataatctaca
gctgactctggtggcccaaggaatttaatgacttctcaaattaagtcaga
gcagtggggatatattagattagtggttccatgctctctgtgcatggggg
acacattggtagtccttggaaatgcaatactcattgctgtaacagaccaa
ttagaatgtaatatctggaggcatggcctaggcactatttcctaacacat
tccctggttcattcaaaatttcccaagatgtttcgtaattcttaagagga
atatgttatcttgctttaaacacccaagttaatactaagaagaataattc
ttaattgagtaatttcttctgcttaatgtgttttgagaatatttctgact
tttagcttttgagatgctttttaatagagattaaggtaaaaagatgtatt
ccaccatctgttcactaacaaattgtagtgcaaatgctatattctaccca
ggttttttgtttgtttgtttgtttggttggttggttttgttgttg
gaattcaataaaaaatgagggttgaaattaaggtcaagtattttgagaat
aatgcatcagtacaaaccctgtcccaaaaggcgatgaatgacaaagctca
gcaagcttgaatctgtgattttctttctacaagtcaccctgaagttgttt
ctaagaggtttaaaacagcccccagaatatctgcaaaaagaaaacagaag
aaatatttagctaagatcatccaggaatgaaatttaggacctgataaaga
tgatggtggtttttattccaaagggaaattcaagaaggagcttgtctccc
tctgtagccagcatcagtcattgagggcctactggtaaatggtaaaatag
acttagtatcaaattgatatttttcagaacctgaatgtcctggaagcttg
agtaaactctctttaccattctttaagtatgtagtgtctccaggcactat
gagcatcagtgaagagactcctgagaaggtttctttaagaagtcttagtt
gatacaccatggaaattaccaatgttgcagaaggtctccaaatcctactg
ccaatgatgtggggacaaaactccaaacaccagtggaggtttggataaac
caacaatgcctgctgaaaactgttcttcattgcttcttcaaattgatgtc
acattcaggagtaacagtaatgtgtcaggtgactcttttatcttcaccag
tcacacttccatctctgctgaataactcagcccacagacaaataagatca
aaattttctacatggaagctgacatcaatattctagccaggaaaagaaat
cacaggagagagactttgtttcctgtttgcttctataaggataataaaca
tctccagttggcatattcacactgttaaaaaccatcatggattgacaaaa
ttcttatgaagtctgaagtatagtcacctgaaggtagtagaattgctgct
caggaaatatggcttcatgcagatcaatggcttatcaaagactcacactc
tataatctagagaaaagtagtggataaaggtcagaatgtgccaagaaaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr15_23634982_23635626
seq2: B6Ng01-013E09.b_47_691

seq1  GAATTCACATTATCATTGGATTGCTTTTATACCAGGGCTGTTGAGCATCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACATTATCATTGGATTGCTTTTATACCAGGGCTGTTGAGCATCT  50

seq1  CCCCATCCTAATTTGAATCTCAAATTTAGAATCCTGAGGTAAATAAATAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCATCCTAATTTGAATCTCAAATTTAGAATCCTGAGGTAAATAAATAT  100

seq1  TTTACTTGTTCATTATCAGAGATTAGGCATGTGGGTTGAGATAATCTACA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTACTTGTTCATTATCAGAGATTAGGCATGTGGGTTGAGATAATCTACA  150

seq1  GCTGACTCTGGTGGCCCAAGGAATTTAATGACTTCTCAAATTAAGTCAGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGACTCTGGTGGCCCAAGGAATTTAATGACTTCTCAAATTAAGTCAGA  200

seq1  GCAGTGGGGATATATTAGATTAGTGGTTCCATGCTCTCTGTGCATGGGGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGTGGGGATATATTAGATTAGTGGTTCCATGCTCTCTGTGCATGGGGG  250

seq1  ACACATTGGTAGTCCTTGGAAATGCAATACTCATTGCTGTAACAGACCAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACATTGGTAGTCCTTGGAAATGCAATACTCATTGCTGTAACAGACCAA  300

seq1  TTAGAATGTAATATCTGGAGGCATGGCCTAGGCACTATTTCCTAACACAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGAATGTAATATCTGGAGGCATGGCCTAGGCACTATTTCCTAACACAT  350

seq1  TCCCTGGTTCATTCAAAATTTCCCAAGATGTTTCGTAATTCTTAAGAGGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCTGGTTCATTCAAAATTTCCCAAGATGTTTCGTAATTCTTAAGAGGA  400

seq1  ATATGTTATCTTGCTTTAAACACCCAAGTTAATACTAAGAAGAATAATTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATGTTATCTTGCTTTAAACACCCAAGTTAATACTAAGAAGAATAATTC  450

seq1  TTAATTGAGTAATTTCTTCTGCTTAATGTGTTTTGAGAATATTTCTGACT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATTGAGTAATTTCTTCTGCTTAATGTGTTTTGAGAATATTTCTGACT  500

seq1  TTTAGCTTTTGAGATGCTTTTTAATAGAGATTAAGGTAAAAAGATGTATT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAGCTTTTGAGATGCTTTTTAATAGAGATTAAGGTAAAAAGATGTATT  550

seq1  CCACCATCTGTTCACTAACAAATTGTAGTGCAAATGCTATATTCTACCCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACCATCTGTTCACTAACAAATTGTAGTGCAAATGCTATATTCTACCCA  600

seq1  GGTTTTTTGTTTGTTTGTTTGTTTGGTTGGTTGGTTTTGTTGTTG  645
      |||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTTTTTGTTTGTTTGTTTGTTTGGTTGGTTGGTTTTGTTGTTG  645

seq1: chr15_23782486_23783539
seq2: B6Ng01-013E09.g_66_1114 (reverse)

seq1  TTTTCTTGGGGCACATTCTTGACCTTTATCCACTTACTCTTCTCTAGATT  50
      |||||||  ||||||||| |||||||||||||| |||| |||||||||||
seq2  TTTTCTT--GGCACATTC-TGACCTTTATCCAC-TACTTTTCTCTAGATT  46

seq1  ATAGAGTGGTGAGTCTTTTGAT-AGCCATTGATCTGCATGAAAGCA-ATA  98
      ||||||| ||||||| |||||| |||||||||||||||||||  || || 
seq2  ATAGAGT-GTGAGTC-TTTGATAAGCCATTGATCTGCATGAAGCCATATT  94

seq1  TCCTGGAGCAGCAATTCTACTACCTTCAGGTGACTATAACTTCAGACTTC  148
      |||| |||||||||||||||||||||||||||||||| ||||||||||||
seq2  TCCT-GAGCAGCAATTCTACTACCTTCAGGTGACTAT-ACTTCAGACTTC  142

seq1  AT-AGAATTTTGTCAATCCATGATGGTTTTTAACAGTGTG-ATATG-CAA  195
      || ||||||||||||||||||||||||||||||||||||| ||||| |||
seq2  ATAAGAATTTTGTCAATCCATGATGGTTTTTAACAGTGTGAATATGCCAA  192

seq1  CTGGAGATGGTATATTATCCTTTATAGAAGC-AACAGGAAACAAAGTCTC  244
      |||||||| || |||||||| |||||||||| ||||||||||||||||||
seq2  CTGGAGAT-GTTTATTATCC-TTATAGAAGCAAACAGGAAACAAAGTCTC  240

seq1  TCTCCTGTGATTTCTTTTCCTGGCTAGAATATTGGATGTCAGCTTCCATG  294
      ||||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  TCTCCTGTGATTTCTTTTCCTGGCTAGAATATT-GATGTCAGCTTCCATG  289

seq1  TAGAAAATTTTGATCTTATTTGTCTGTGGGCTGAGTTATTCAGCAGAGAT  344
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAAAATTTTGATCTTATTTGTCTGTGGGCTGAGTTATTCAGCAGAGAT  339

seq1  GGAAGTGTGACTGGTGAAGATAAAAGAGTCACCTGACACATTACTGTTAC  394
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAGTGTGACTGGTGAAGATAAAAGAGTCACCTGACACATTACTGTTAC  389

seq1  TCCTGAATGTGACATCAATTTGAAGAAGCAATGAAGAACAGTTTTCAGCA  444
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGAATGTGACATCAATTTGAAGAAGCAATGAAGAACAGTTTTCAGCA  439

seq1  GGCATTGTTGGTTTATCCAAACCTCCACTGGTGTTTGGAGTTTTGTCCCC  494
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCATTGTTGGTTTATCCAAACCTCCACTGGTGTTTGGAGTTTTGTCCCC  489

seq1  ACATCATTGGCAGTAGGATTTGGAGACCTTCTGCAACATTGGTAATTTCC  544
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATCATTGGCAGTAGGATTTGGAGACCTTCTGCAACATTGGTAATTTCC  539

seq1  ATGGTGTATCAACTAAGACTTCTTAAAGAAACCTTCTCAGGAGTCTCTTC  594
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGTGTATCAACTAAGACTTCTTAAAGAAACCTTCTCAGGAGTCTCTTC  589

seq1  ACTGATGCTCATAGTGCCTGGAGACACTACATACTTAAAGAATGGTAAAG  644
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGATGCTCATAGTGCCTGGAGACACTACATACTTAAAGAATGGTAAAG  639

seq1  AGAGTTTACTCAAGCTTCCAGGACATTCAGGTTCTGAAAAATATCAATTT  694
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGTTTACTCAAGCTTCCAGGACATTCAGGTTCTGAAAAATATCAATTT  689

seq1  GATACTAAGTCTATTTTACCATTTACCAGTAGGCCCTCAATGACTGATGC  744
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATACTAAGTCTATTTTACCATTTACCAGTAGGCCCTCAATGACTGATGC  739

seq1  TGGCTACAGAGGGAGACAAGCTCCTTCTTGAATTTCCCTTTGGAATAAAA  794
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCTACAGAGGGAGACAAGCTCCTTCTTGAATTTCCCTTTGGAATAAAA  789

seq1  ACCACCATCATCTTTATCAGGTCCTAAATTTCATTCCTGGATGATCTTAG  844
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCACCATCATCTTTATCAGGTCCTAAATTTCATTCCTGGATGATCTTAG  839

seq1  CTAAATATTTCTTCTGTTTTCTTTTTGCAGATATTCTGGGGGCTGTTTTA  894
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAATATTTCTTCTGTTTTCTTTTTGCAGATATTCTGGGGGCTGTTTTA  889

seq1  AACCTCTTAGAAACAACTTCAGGGTGACTTGTAGAAAGAAAATCACAGAT  944
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCTCTTAGAAACAACTTCAGGGTGACTTGTAGAAAGAAAATCACAGAT  939

seq1  TCAAGCTTGCTGAGCTTTGTCATTCATCGCCTTTTGGGACAGGGTTTGTA  994
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAGCTTGCTGAGCTTTGTCATTCATCGCCTTTTGGGACAGGGTTTGTA  989

seq1  CTGATGCATTATTCTCAAAATACTTGACCTTAATTTCAACCCTCATTTTT  1044
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGATGCATTATTCTCAAAATACTTGACCTTAATTTCAACCCTCATTTTT  1039

seq1  TATTGAATTC  1054
      ||||||||||
seq2  TATTGAATTC  1049