BAC Information

Click to search

BAC

Clone NameB6Ng01-013J13
Chromosome15 (Build37)
Map Location 19,941,494 - 19,942,536
singlet/doubletsinglet
Overlap genenone
Upstream geneCdh10, EG666857, EG666875, LOC621884, LOC100040265
Downstream geneAcot10, LOC100040302
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-013J13.bB6Ng01-013J13.g
ACCDH848372DH848373
length1,2081,029
definitionDH848372|Mus musculus domesticus DNA, BAC clone: B6Ng01-013J13, 5' end.DH848373|Mus musculus domesticus DNA, BAC clone: B6Ng01-013J13, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattcctaaatctgataaacaaccttagtaaattggctacatataaaat
taactcaaacaaattagtagccttcctctactcaaaaggtaaacaggctg
agaaagaaattatggaaatgacactcttcacaatagtcacaaatattata
aaatatcttggtgtgcctctaaccaagcaagtgaaagatctgtatgacaa
gaacttcaagtctctgaaaaaagaaatcgaagaagacctcagaagatgga
aagatctccatgatcgtggactggcaagattaacatagtaaaattggcca
tcttgctgaaagcaatatacagattcaatgaaatccccatcaaaactccc
actcaattcttcataaagttagaaagaacaatttaaaaattcatttgcat
taagcaaaaaatgaagttattgaggaaatcacaatccctgacctcaagct
gtactacagagcaatcatgaaaaaactgcatggtattggtacagagacag
gtaggtagatcaatgtaatagaactgaagaccctaaaaggaatacatatg
gccaaatgatttttgacagaagagataaaatcatctagggaaaaaaggaa
gcattttcaacaaatggtgctggttcatctagcaatcaccatgtagaaga
atgcaaatcttatttccttgtacaaagcttgaacccaagcagatcaagaa
cctctacaaaaaaccagatacattgaatctaatagaagataaaatgggga
aaatcctcgaggacatgggcacagaggggaaattcctgaacagaacaaca
aggtcttatgctctaagatcaaaaattgacaaatgggacctcataaaatt
gcaaagtttctgtaaggcaaaggacactgtcaatagacaaacgggtatca
acagattgggaaagatcttgtatagtcagtgtttctattcctgcacaaac
atcatgaccagaataagttagggagaaagggtatttagcttacaatccat
actgctgttataccaagagtcagactgactcaacagtcagagcagaggtg
atgccgagtccatgaggatgttctaactgtcctgctttcctggctggtca
gcctgctctctttaaagccagactacagccagaaatgtcaccccagagac
tccatgatcataggaaagcctcaaggtgtcttctacaaggagcatttccc
tcactatg
gaattccttagctctatggaaatactggaactgatctggagcctccttcc
ttatgacttgcactcatagcatatgaaaatgtaatacaagcttccaagag
agaaaataagtctataggaatacctagttttaaagattacaaatcaagcc
aattaacaacattgcaagatagagcaaaaagcacaatagtatttgtgcct
tggagataaaaacaccaataaattagacattaaataggaaggaatttatg
tatgagattataaatcatcccaaccaaccatgcttgctgagaccttatat
cataacatctttcttaatgtatagtttgagtaagatgaaaataaacctag
aatttaatatttcaggttagatttagaatatttttcttattcatattctt
caaatatgtagaagtctttccactggctaaactcttatattcatcgctag
aatttttctataagaaaatgactaaatgacttaaccacagacatcattct
tctctctataaaacagttcagtttagtttcatgtgatagtagaaataagt
ggatattagcccagaaacttaggatacccaagatataagatacaatttgc
taaacgcatgaaactcaagaagaacaagaccaaagtgtggacactttgcc
ccttcttacaattgggaacaaatacccatggaaggagttatagagacaaa
gtttggagctgagacaaaaggaaagaccatctagagactgccatatccag
ggatctattccataatcagcttccaaatgctgacaccattgcatacacta
acaagattttgctgaaatgacccagatacagctttctcttgtgagactat
gcgggggcctagcaaacacagagtggatgctcacagacaactattggatg
gatcacaggcccctaatggaggggctagtagaaagtaccaaggagctaag
ggattgcaccctataggatggacaacatatgactacagtacccggagctc
tgactctagctgcaatgtatcaaagatgg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr15_19941494_19942536
seq2: B6Ng01-013J13.g_66_1094

seq1  GAATTCCTTAGCTCTATGGAAATACTGGAACTGATCTGGAGCCTCCTTCC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTTAGCTCTATGGAAATACTGGAACTGATCTGGAGCCTCCTTCC  50

seq1  TTATGACTTGCACTCATAGCATATGAAAATGTAATACAAGCTTCCAAGAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATGACTTGCACTCATAGCATATGAAAATGTAATACAAGCTTCCAAGAG  100

seq1  AGAAAATAAGTCTATAGGAATACCTAGTTTTAAAGATTACAAATCAAGCC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAATAAGTCTATAGGAATACCTAGTTTTAAAGATTACAAATCAAGCC  150

seq1  AATTAACAACATTGCAAGATAGAGCAAAAAGCACAATAGTATTTGTGCCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTAACAACATTGCAAGATAGAGCAAAAAGCACAATAGTATTTGTGCCT  200

seq1  TGGAGATAAAAACACCAATAAATTAGACATTAAATAGGAAGGAATTTATG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAGATAAAAACACCAATAAATTAGACATTAAATAGGAAGGAATTTATG  250

seq1  TATGAGATTATAAATCATCCCAACCAACCATGCTTGCTGAGACCTTATAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGAGATTATAAATCATCCCAACCAACCATGCTTGCTGAGACCTTATAT  300

seq1  CATAACATCTTTCTTAATGTATAGTTTGAGTAAGATGAAAATAAACCTAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAACATCTTTCTTAATGTATAGTTTGAGTAAGATGAAAATAAACCTAG  350

seq1  AATTTAATATTTCAGGTTAGATTTAGAATATTTTTCTTATTCATATTCTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTAATATTTCAGGTTAGATTTAGAATATTTTTCTTATTCATATTCTT  400

seq1  CAAATATGTAGAAGTCTTTCCACTGGCTAAACTCTTATATTCATCGCTAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATATGTAGAAGTCTTTCCACTGGCTAAACTCTTATATTCATCGCTAG  450

seq1  AATTTTTCTATAAGAAAATGACTAAATGACTTAACCACAGACATCATTCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTTTCTATAAGAAAATGACTAAATGACTTAACCACAGACATCATTCT  500

seq1  TCTCTCTATAAAACAGTTCAGTTTAGTTTCATGTGATAGTAGAAATAAGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTCTATAAAACAGTTCAGTTTAGTTTCATGTGATAGTAGAAATAAGT  550

seq1  GGATATTAGCCCAGAAACTTAGGATACCCAAGATATAAGATACAATTTGC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATATTAGCCCAGAAACTTAGGATACCCAAGATATAAGATACAATTTGC  600

seq1  TAAACGCATGAAACTCAAGAAGAACAAGACCAAAGTGTGGACACTTTGCC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAACGCATGAAACTCAAGAAGAACAAGACCAAAGTGTGGACACTTTGCC  650

seq1  CCTTCTTACAATTGGGAACAAAATACCCATGGAAGGAGTTATAGAGACAA  700
      ||||||||||||||||||| ||||||||||||||||||||||||||||||
seq2  CCTTCTTACAATTGGGAAC-AAATACCCATGGAAGGAGTTATAGAGACAA  699

seq1  AGTTTGGAGCTGAGACAAAAGGAAAGACCATCTAGAGACTGCCATATCCA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTGGAGCTGAGACAAAAGGAAAGACCATCTAGAGACTGCCATATCCA  749

seq1  GGGATCTATTCCATAATCAGCTTCCAAATGCTGACACCATTGCATACACT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGATCTATTCCATAATCAGCTTCCAAATGCTGACACCATTGCATACACT  799

seq1  AACAAGATTTTGCTGAAATGACCCAGATACAGCTTTCTCTTGTGAGACTA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAAGATTTTGCTGAAATGACCCAGATACAGCTTTCTCTTGTGAGACTA  849

seq1  TGCGGGGGCCTAGCAAACACAGAAGTGGATGCTCACAGACAACTATTGGA  900
      |||||||||||||||||||||| |||||||||||||||||||||||||||
seq2  TGCGGGGGCCTAGCAAACACAG-AGTGGATGCTCACAGACAACTATTGGA  898

seq1  TGGATCACAGGGCCCCTAATGGAGGGGCTAG-AGAAAGTACCCAAGGAGC  949
      ||||||||| ||||||||||||||||||||| |||||||| |||||||||
seq2  TGGATCACA-GGCCCCTAATGGAGGGGCTAGTAGAAAGTA-CCAAGGAGC  946

seq1  TAAAGGGATTTGCAACCCTATA-GATGGAACAACATTATGAACTAACCAG  998
      | |||||| |||| |||||||| ||||| |||||| |||| ||||  |||
seq2  T-AAGGGA-TTGC-ACCCTATAGGATGG-ACAACA-TATG-ACTA--CAG  988

seq1  TACCCCGGAGCTCTTGACTCTAGCTGCATATGTATCAAAAGATGG  1043
      || |||||||||| |||||||||||||| ||||||| ||||||||
seq2  TA-CCCGGAGCTC-TGACTCTAGCTGCA-ATGTATC-AAAGATGG  1029